BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61240.1
Length=2402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486601 jgi|Araly1|486601|fgenesh2_kg.5__2593__AT3G61240.1 3273 0.0
Ahg483719 jgi|Araly1|483719|fgenesh2_kg.4__2779__AT2G45810.1 1452 0.0
> Ahg486601 jgi|Araly1|486601|fgenesh2_kg.5__2593__AT3G61240.1
Length=2313
Score = 3273 bits (1772), Expect = 0.0
Identities = 2086/2228 (94%), Gaps = 59/2228 (3%)
Strand=Plus/Plus
Query 129 cttcttcttTAGATTGTTG-TAATTCCAATCGGAACTCTCGATTCGCTTTCTTCTCC-GT 186
||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 81 CTTCTTCTTCAGATTG-TGATAATTCCAATCGGAACTCTCGATTCGCTTTCTTCTCCAGT 139
Query 187 TCTTCTGTGGCGGACCGGTTTTGTGGTTTTTTATTTGAACATTCCCGATCTTGCCCTGAG 246
| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 140 T-TT-TCTGGCGGACCGGTTTTGTGG--TTTTATTTGAACATTCCCGATCTTGCCCTGAG 195
Query 247 TTCCACGATCAGTTTCTTTAAACCCTAGGTTTTAC-ACAAGCATTCTGTTTCTCCAGATT 305
||||| ||||||||||||||||||||||||||| | || |||| |||| | ||
Sbjct 196 TTCCATGATCAGTTTCTTTAAACCCTAGGTTTT-CAACGAGCA------TTCT-C---TT 244
Query 306 ATCGCAGACTCTTTCGTTCTATTCTTTGTAG-TTTTGTAAAAGGTA-TTTCGGTAGATTT 363
| | |||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 245 -T--C--TCTCTTTCGTTCTCTTCTTTGTAGTTTTTGTAAAAGGTATTTTCGGTAGATTT 299
Query 364 AGGGTTTGTCTGTGTCTAGTTTTCGAGATCGAGAGAGATTTGTGATGAATACTAACAGAG 423
||||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 300 AGGGTTTGTCTGTCTCTAGTTTTCGAGATCGAGAGAGATTTGTGATG-A-A-TAACAGAG 356
Query 424 GAAGATATCCACCGGGTGTTGGAACGGGTCGTGGTGCGCCTCCGAATCCAGATTATCATC 483
||||||||||||||||||||||||| || ||||||||||| ||||||||||| | | |||
Sbjct 357 GAAGATATCCACCGGGTGTTGGAACCGGACGTGGTGCGCCGCCGAATCCAGA-T-T-ATC 413
Query 484 AGTCGTATCGGCAGCAACAACCACCTCAAGATCAGCAGTATGTTCAACGCGGTTATTCTC 543
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 414 AGTCGTATCGGCAGCAAC-A--ACCTCAAGATCAGCAGTATGTTCAACGCGGTTATTCGC 470
Query 544 AGAACCCTcagcagatgcaactccagcaacaacatcaacaacaacagcagcagcaacagT 603
|||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 471 AGAATCCTCAGCAGATGCAACTGCAGCAACAACATCATCAACAGCAACAGCAGCAACAGT 530
Query 604 GGTCAAGACGCCCTCAGCTTCCTGGAAACGCTAGTAACGCTAATGAGGTGGTTCAGCAGA 663
||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 531 GGTCAAGACGCCCTCAGCTTCCTGGAAACGCTAGTAACGCTAACGA---GGTTCAACAGA 587
Query 664 CGACCCAGCCCGAAGCTAGCAGCGATGCTAATGGTCAAGACTGGAAGGCTACGTTAAGGC 723
|| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 588 CGTCTCAGCCCGAAACTAGCAGCGATGCTAATGGTCAAGACTGGAAGGCAACGTTAAGGC 647
Query 724 TACCACCTCCTGATACTCGTTATCAGACAGCGGATGTGACAGCTAC-AAAGGGAAATGAA 782
| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 648 TCCCACCTCCTGATACTCGTTATCAGACAGCGGATGTGACAGCTACGAAA-GGAAATGAA 706
Query 783 TTCGAAGATTACTTTCTGAAAAGAGATCTGTTAAAGGGAATATATGAGAAGGGTTTTGAG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTCGAAGATTACTTTCTGAAAAGAGATCTGTTAAAGGGAATATATGAGAAGGGTTTTGAG 766
Query 843 AAGCCATCTCCAATTCAAGAAGAGAGCATTCCAATTGCTTTAACTGGTAGTGATATTCTT 902
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 767 AAGCCATCTCCAATTCAAGAAGAGAGCATTCCAATCGCTTTAACTGGTAGTGATATTCTT 826
Query 903 GCTAGAGCTAAAAACGGTACAGGAAAGACTGGTGCCTTCTGCATTCCAGTCCTCGAGAAA 962
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GCTAGAGCCAAAAACGGTACAGGAAAGACTGGTGCCTTCTGCATTCCAGTCCTCGAGAAA 886
Query 963 ATTGACCCAAATAACAATGTTATTCAAGCCATGATTCTAGTTCCAACGCGAGAGCTGGCC 1022
||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 ATTGATCCATCTAACAACGTTATTCAAGCCATGATTCTAGTTCCAACGCGAGAGCTGGCC 946
Query 1023 CTTCAGACATCACAAGTTTGCAAGGAGCTTTCCAAATATTTGAATATCCAGGTTATGGTC 1082
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 947 CTTCAGACATCACAAGTTTGCAAGGAGCTTTCCAAATATCTGAATATCCAGGTTATGGTC 1006
Query 1083 ACCACTGGCGGTACCAGTCTGAGAGATGATATTATGCGATTACATCAACCTGTGCATCTG 1142
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1007 ACTACTGGCGGTACCAGTCTGAGAGATGATATTATGCGATTACATCAGCCTGTGCATCTA 1066
Query 1143 CTGGTTGGAACTCCTGGAAGAATATTGGATCTTACAAAAAAGGGTGTCTGTGTTTTGAAA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CTGGTTGGAACTCCTGGAAGAATATTGGATCTTACAAAAAAGGGTGTCTGTGTTTTGAAA 1126
Query 1203 GACTGTGCGATGCTTGTAATGGATGAGGCCGACAAGCTTTTGTCTGCAGAATTCCAACCT 1262
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1127 GACTGTGCGATGCTTGTAATGGATGAGGCCGACAAGCTTTTATCTGCGGAATTCCAACCT 1186
Query 1263 TCTCTAGAGGAATTGATACAGTTTCTACCCCAAAATCGTCAGTTTTTGATGTTTTCCGCC 1322
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1187 TCTCTTGAGGAATTGATACAGTTTCTGCCCCAAAATCGTCAATTTTTGATGTTTTCTGCT 1246
Query 1323 ACATTCCCTGTCACTGTTAAGGCTTTTAAGGATCGACATCTCCGGAAGCCCTATGTTATC 1382
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 ACATTCCCTGTCACTGTGAAGGCTTTTAAGGATCGACATCTCCGGAAGCCCTATGTTATC 1306
Query 1383 AATCTCATGGATCAACTCACGCTTATGGGTGTCACGCAATATTATGCTTTTGTCGAAGAA 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1307 AATCTCATGGATCAACTCACGCTTATGGGTGTCACGCAATATTATGCTTTTGTTGAAGAA 1366
Query 1443 AGACAGAAGGTTCACTGCCTCAACACACTTTTCTCTAAGCTGCAAATAAATCAATCGATA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AGACAGAAGGTTCACTGCCTCAACACACTTTTCTCTAAGCTGCAAATAAATCAATCGATA 1426
Query 1503 ATCTTTTGCAACTCTGTCAATCGCGTGGAGCTGTTGGCTAAGAAAATCACAGAACTTGGT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 ATCTTTTGCAACTCTGTCAATCGCGTGGAGCTGTTGGCTAAGAAAATCACAGAACTTGGT 1486
Query 1563 TATTCATGCTTCTACATTCATGCAAAGATGGTTCAAGACCACAGGAACAGAGTATTCCAC 1622
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1487 TATTCATGCTTCTACATTCATGCGAAGATGGTTCAAGACCATAGGAACAGAGTATTCCAC 1546
Query 1623 GAGTTCCGCAATGGTGCTTGCAGGAATCTCGTTTGCACTGATCTGTTTACTCGAGGAATT 1682
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GAGTTCCGCAATGGTGCCTGCAGGAATCTCGTTTGCACTGATCTGTTTACTCGAGGAATT 1606
Query 1683 GACATTCAAGCTGTGAATGTCGTGATCAACTTTGATTTTCCTAGGACTTCTGAGTCATAT 1742
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1607 GACATTCAAGCTGTGAATGTAGTGATCAACTTCGATTTTCCAAGGACTTCTGAGTCATAT 1666
Query 1743 CTACACAGGGTGGGTCGATCAGGACGGTTTGGACACCTTGGATTGGCTGTGAATTTGGTA 1802
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1667 CTACACAGGGTGGGCCGATCAGGACGGTTTGGACACCTTGGGTTGGCTGTGAATTTGGTA 1726
Query 1803 ACTTATGAGGACCGTTTCAAAATGTATCAGACTGAGCAAGAACTTGGGACCGAAATCAAA 1862
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1727 ACTTACGAGGACCGTTTCAAAATGTATCAGACTGAACAAGAACTTGGGACTGAAATCAAA 1786
Query 1863 CCAATTCCTTCTAATATCGATCAAGCAATCTACTGTCAGTAAACTTGTAACTGTGCATGA 1922
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1787 CCAATTCCTTCTAATATCGATCAAGCTATCTACTGTCAGTAAACTTGTAACCGTGCATGA 1846
Query 1923 AACGTGTCTCCACCCAATGAGAGGTACAAGATGGTTAAAATGGTGTTTCTCAAGCTCGAG 1982
||||||||||||||| | ||||| |||| |||| |||||||||||||||||||||||||
Sbjct 1847 AACGTGTCTCCACCCGAGGAGAGATACAGGATGATTAAAATGGTGTTTCTCAAGCTCGAT 1906
Query 1983 GGGAGGAGATGAGGCAACTAGTACTTGGCGGTTCATGTAAAGACTCGTTACTCAGTGGTT 2042
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1907 GGGAGGAGATGAGGCAACAAGTACTTGGCGGTTCATGTAAAGACTCGTTACTGAGTGGTT 1966
Query 2043 TGGTTCCTAATCTCTCTTAAAGACACT-TGTTATCTGGTTCTATGGAAACCTCTTTACGC 2101
||||| |||||||||||| ||||| | |||| |||||||||||| |||||| ||||||
Sbjct 1967 TGGTTTCTAATCTCTCTTTAAGACT-TATGTTTTCTGGTTCTATG-AAACCTTTTTACGT 2024
Query 2102 TGCACTTATTATGAGACTCCCTTT-GACTTGGTTAGTAATAAAGATAGAACGTATGACTC 2160
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 2025 TGCACTTATTATGAGACTCTCTTTTGACTTGGTTAGTAATAAAGATAGACCGTATGACTC 2084
Query 2161 TCCTCTTTTTTATTTTCGTGTTGGGCTCTGTTTGGAATTATGG-GCT---TTA---TCCT 2213
||||||||||||||||||||||||||| ||||||||||||| || ||| || |
Sbjct 2085 TCCTCTTTTTTATTTTCGTGTTGGGCTTTGTTTGGAATTATAAAGCCCACTTAGGATC-T 2143
Query 2214 ATTTAGGATCTATTTATCATGAAAGTTGCACTTCTTAATTTTTGCTTCCAC--GGAATTA 2271
|||| |||| || |||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 2144 CTTTA--ATCT-TT-ATCATGAAAGTTGCACTTTTTAATTTTTGCTTCCCCAAGGAATTA 2199
Query 2272 TTTTGATTTTTCCAAAATATTTTCTTCCACATGCTTATTATTCTAGTTTGGTATTAAGCT 2331
||| |||||| |||||||| |||||||| ||||||||||||||| ||||||| |||||||
Sbjct 2200 TTTGGATTTT-CCAAAATAGTTTCTTCCGCATGCTTATTATTCTCGTTTGGTTTTAAGCT 2258
Query 2332 ATTTTCGT 2339
||||||||
Sbjct 2259 ATTTTCGT 2266
Score = 124 bits (67), Expect = 2e-27
Identities = 77/81 (95%), Gaps = 3/81 (4%)
Strand=Plus/Plus
Query 1 GGAGAAAATCCATTGACGCCCTAAC---AAAAGACGCCGGCGAGTGTATTCGTCACTTTC 57
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAAAATCCATTGACGCCCTAACAAAAAAAGACGCCGGCGAGTGTATTCGTCACTTTC 60
Query 58 TCTAGTTTCCTGTAACCCAAC 78
||||||||||| |||||||||
Sbjct 61 TCTAGTTTCCTCTAACCCAAC 81
> Ahg483719 jgi|Araly1|483719|fgenesh2_kg.4__2779__AT2G45810.1
Length=2253
Score = 1452 bits (786), Expect = 0.0
Identities = 1186/1379 (86%), Gaps = 28/1379 (2%)
Strand=Plus/Plus
Query 549 CCTcagcagatgcaactccagcaacaacatcaacaacaacagcagcagcaacagTGGTCA 608
||||||||||| |||| || |||||||| || || || || || || ||||| |||||
Sbjct 406 CCTCAGCAGATTCAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAATGGTCT 465
Query 609 AGACGCCCTCAGCTTCCTGG-AAACGCTAGTAACGCTAATGAGGTGGTTC-AGCAGACGA 666
|||||||||||||||||||| | | | ||| | | | | || | | || || | |||
Sbjct 466 AGACGCCCTCAGCTTCCTGGTGATC-CAAGTTATG-T-A-GACGAAG-TCGAGAAAACGG 520
Query 667 CCCAGCCCGAAGCTAGCAGCGATGCTAATGGTCAAGACTGGAAGGCTACGTTAAGGCTAC 726
|| | ||||||| ||||||| ||||| | | |||||||| || || |||| ||| |
Sbjct 521 TTCAATCTGAAGCTATCAGCGATTCTAATAATGATGACTGGAAAGCAACCTTAAAGCTGC 580
Query 727 CACCTCCTGATACTCGTTATCAGACAGCGGATGTGACAGCTAC-AAAGGGAAATGAATTC 785
|||| | |||| |||||| ||||||| ||||||||| || || ||| |||||||||||
Sbjct 581 CACCACGAGATAATCGTTACCAGACAGAGGATGTGACTGCCACTAAA-GGAAATGAATTT 639
Query 786 GAAGATTACTTTCTGAAAAGAGATCTG-TTAAAGGGAATATATGAGAAGGGTTTTGAGAA 844
|||||||||||| |||| || |||||| || | |||||||||||||||||||||||| ||
Sbjct 640 GAAGATTACTTTTTGAAGAGGGATCTGCTT-AGGGGAATATATGAGAAGGGTTTTGAAAA 698
Query 845 GCCATCTCCAATTCAAGAAGAGAGCATTCCAATTGCTTTAACTGGTAGTGATATTCTTGC 904
|||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 699 ACCATCTCCTATTCAGGAAGAAAGCATTCCAATTGCTTTGACTGGCAGTGATATTCTTGC 758
Query 905 TAGAGCTAAAAACGGTACAGGAAAGACTGGTGCCTTCTGCATTCC-AGTCCTCGAGAAAA 963
|||||| ||||| || || || ||||||||||||||||||||||| | ||| |||||||
Sbjct 759 TAGAGCCAAAAATGGGACTGGCAAGACTGGTGCCTTCTGCATTCCTA-CCCTTGAGAAAA 817
Query 964 TTGA-CCCAAATAACAATGTTATTCAAGCCATGATTCTAGTTCCAACGCGAGAGCTGGCC 1022
|||| ||| | |||||||| || |||||| | |||||||||||||| ||||||||||||
Sbjct 818 TTGATCCC-GAGAACAATGTCATCCAAGCCGTAATTCTAGTTCCAACCCGAGAGCTGGCC 876
Query 1023 CTTCAGACATCACAAGTTTGCAAGGAGCTTTCCAAATATTTGAATATCCAGGTTATGGTC 1082
||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 877 CTTCAGACATCCCAGGTTTGCAAGGAGCTTTCCAAATATTTGAAAATTGAGGTTATGGTC 936
Query 1083 ACCACTGGCGGTACCAGTCTGAGAGATGATATTATGCGATTACATCAACCTGTGCATCTG 1142
||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||| ||
Sbjct 937 ACCACTGGCGGTACCAGTCTGAGGGATGATATCATGCGATTATATCAACCTGTCCATTTG 996
Query 1143 CTGGTTGGAACTCCTGGAAGAATATTGGATCTTACAAAAAAGGGTGTCTGTGTTTTGAAA 1202
||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||
Sbjct 997 TTGGTTGGAACTCCTGGAAGAATATTAGATCTTGCCAAAAAGGGTGTGTGTGTTTTGAAA 1056
Query 1203 GACTGTGCGATGCTTGTAATGGATGAGGCCGACAAGCTTTTGTCTGCAGAATTCCAACCT 1262
|| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 1057 GATTGTGCGATGCTTGTAATGGATGAAGCCGACAAGCTTTTGTCTGTAGAATTTCAACCG 1116
Query 1263 TCTCTAGAGGAATTGATACAGTTTC-TACCCCAAAATCGTCAGTTTTTGATGTTTTCCGC 1321
||| | ||||| ||||||||| ||| |||| | || |||||| || |||||||||| ||
Sbjct 1117 TCTATTGAGGAGTTGATACAG-TTCTTACCAGAGAACCGTCAGATTCTGATGTTTTCAGC 1175
Query 1322 CACATTCCCTGTCACTGTTAAGGCTTTTAAGGATCGACATCTCCGGAAGCCCTATGTTAT 1381
||||| ||||||||||| ||| |||| ||||||||| ||||| ||||||| || ||||
Sbjct 1176 TACATTTCCTGTCACTGTGAAGTCTTTCAAGGATCGATATCTCAGGAAGCCTTACATTAT 1235
Query 1382 CAATCTCATGGATCAACTCACGCTTATGGGTGTCACGCAATATTATGCTTTTGTCGAAGA 1441
||||||||||||||| ||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 1236 CAATCTCATGGATCAGCTCACACTTATGGGTGTTACCCAATATTATGCTTTTGTTGAAGA 1295
Query 1442 AAGACAGAAGGTTCACTGCCTCAACACACTTTTCTCTAAGCTGCAAATAAATCAATCGAT 1501
|| |||||||| |||||||| ||||| || ||||||||||| |||||||| ||||| ||
Sbjct 1296 GAGGCAGAAGGTGCACTGCCTTAACACGCTATTCTCTAAGCTACAAATAAACCAATCCAT 1355
Query 1502 AATCTTTTGCAACTCTGTCAATCGCGTGGAGCTGTTGGCTAAGAAAATCACAGAACTTGG 1561
||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||| ||
Sbjct 1356 TATCTTTTGCAACTCTGTTAATCGTGTTGAGCTGTTGGCCAAGAAAATAACAGAACTCGG 1415
Query 1562 TTATTCATGCTTCTACATTCATGCAAAGATGGTTCAAGACCA-CAGGAACAGAGTATTCC 1620
||| ||||||||||| || ||||||||||||||||||||||| | ||||||| || ||||
Sbjct 1416 TTACTCATGCTTCTATATCCATGCAAAGATGGTTCAAGACCATC-GGAACAGGGTTTTCC 1474
Query 1621 ACGAGTTCCGCAATGGTGCTTGCAGGAATCTCGTTTGCACTGATCTGTTTACTCGAGGAA 1680
| || |||||||||||||| ||||| ||||| |||||||||||| ||||||| || || |
Sbjct 1475 ATGATTTCCGCAATGGTGCATGCAGAAATCTTGTTTGCACTGATTTGTTTACACGTGGGA 1534
Query 1681 TTGACATTCAAGCTGTGAATGTCGTGATCAACTTT-GATTTTCCTAGGACTTCTGAGTCA 1739
|||||||||||||||||||||| || || || ||| |||||||||||||||||||||||
Sbjct 1535 TTGACATTCAAGCTGTGAATGTGGTCAT-AAATTTCGATTTTCCTAGGACTTCTGAGTCG 1593
Query 1740 TATCTACACAGGGTGGGTC-GATCAGGACGGTTTGGACACCTTGGATTGGCTGTGAATTT 1798
|||||||| ||||| || | |||||||||| || ||||||||||||||||||||||||||
Sbjct 1594 TATCTACATAGGGTAGG-CAGATCAGGACGATTCGGACACCTTGGATTGGCTGTGAATTT 1652
Query 1799 GGTAACTTATGAGGACCGTTTCAAAATGTATCAGACTGAGCAAGAACTTGGGACCGAAAT 1858
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1653 GGTAACTTATGAGGACCGCTTCAAAATGTATCAGACTGAGCAAGAACTTGGAACCGAAAT 1712
Query 1859 CAAACCAATTCCTTCTAAT-ATCGATCAAG-CAATCTACTGTCAGTAAACTTGTAACTG 1915
||| || || ||||| | | ||||| |||| ||||||||||||||||| ||| || |||
Sbjct 1713 CAAGCCCATACCTTC-ACTTATCGA-CAAGGCAATCTACTGTCAGTAA-CTTCTACCTG 1768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90502422120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5