BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61250.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324558 jgi|Araly1|324558|fgenesh1_pm.C_scaffold_5002102 1417 0.0
Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2 87.9 2e-16
> Ahg324558 jgi|Araly1|324558|fgenesh1_pm.C_scaffold_5002102
Length=894
Score = 1417 bits (767), Expect = 0.0
Identities = 856/899 (95%), Gaps = 6/899 (1%)
Strand=Plus/Plus
Query 305 ATGGGAAGAACACCTTGTTGTGACAAGATTGGTTTGAAGAAAGGTCCTTGGACGCCTGAA 364
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGAAGAACACCTTGTTGTGACAAGAAAGGTTTGAAGAAAGGTCCATGGACGCCTGAA 60
Query 365 GAAGATGAGGTTCTTGTTGCGCATATCAAGAAAAATGGACATGGAAGCTGGAGAACACTT 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGAGGTTCTTGTTGCACATATCAAGAAAAATGGACATGGAAGCTGGAGAACACTT 120
Query 425 CCTAAACTTGCTGGTTTACTTCGCTGTGGGAAGAGTTGCAGGCTGAGATGGACAAACTAT 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAAGCTTGCTGGTTTACTTCGCTGTGGGAAGAGTTGCAGGCTGAGATGGACAAACTAT 180
Query 485 CTGAGACCAGACATAAAGAGAGGTCCTTTCACTGCTGATGAAGAGAAACTTGTTATCCAG 544
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 181 CTGAGACCAGACATAAAGAGAGGTCCTTTCACTGCTGAGGAAGAGAAACTTGTTGTCCAG 240
Query 545 CTTCATGCCATTCTCGGCAACAGGTGGGCTGCTATTGCAGCACAGCTTCCAGGAAGAACA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCATGCCATTCTCGGCAACAGGTGGGCTGCTATTGCAGCACAGCTTCCAGGAAGAACA 300
Query 605 GACAACGAGATCAAGAACTTATGGAACACTCATTTGAAGAAACGTCTTTTATCTATGGGT 664
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GACAACGAGATCAAGAACTTATGGAACACTCATTTGAAGAAACGTCTTTTATGTATGGGT 360
Query 665 CTTGATCCCAGAACTCATGAGCCATTACCTTCATATGGGTTAGCTAAACAAGCTCCATCT 724
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTTGATCCCAGAACCCATGAGCCATTACCTTCATATGGGTTAGCCAAACAAGCTCCATCT 420
Query 725 TCACCAACAACTCGCCACATGGCTCAATGGGAAAGTGCTAGGGTTGAAGCTGAGGCAAGG 784
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TCACCAACTACTCGCCACATGGCTCAATGGGAAAGCGCTAGGGTTGAAGCTGAGGCAAGG 480
Query 785 CTTTCTAGAGAATCAATGCTCTTTAGCCCTTCTTTTTACTCTGGTGTAGTAAAAACTGAA 844
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 481 CTTTCTAGAGAATCAATGCTCTTTAGTCCTTCTTCTTACTCTGGTGTAGTTAAAACTGAT 540
Query 845 TGTGATCACTTCTTACGCATTTGGAATTCCGAGATTGGTGAAGCTTTCAGGAATCTCGCT 904
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 541 TGTGATCACTTCTTACGCATTTGGAATTCTGAGATTGGTGAAGCTTTCAGAAATCTTGCT 600
Query 905 CCATTAGATGAATCAACTATTACTAGTCAAAGCCCTTGCTCGAGGGCAACATCGACCTCA 964
||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || |||
Sbjct 601 CCATTAGATGAATCAACTA---CTAGTCAAAGCACTTGCTCGAGGACAACATCTACATCA 657
Query 965 TCTGCACTTCTGAAGAGCTCAACAAATTCTTGGGGAGGGAAAGAGGTTACTGTGGCGATT 1024
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 658 TCTGCACTTCTAAAGAGCTCAACAATTTCTTGTGGAGGGAAAGAGGTTACTGTGGCGATT 717
Query 1025 CATGGCTCAGATTATTCTCCATATTCAAATGATCTTGAAGATGATTCAACAGACTCTGCT 1084
||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 718 CATGGCTCAGAGTCTTCTCCATGTTCAAATGTTCTTGAAGATGATTCAACAGACTCTGCT 777
Query 1085 CTTCAACTTCTGCTTGATTTCCCTATAAGCGATGATGATATGAGCTTCTTGGAAGAGAAC 1144
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTCAACTTCTGCTTGATTTTCCGATAAGCGATGATGATATGAGCTTCTTGGAAGAGAAC 837
Query 1145 ATTGACAGCTACTCACAGGCTCCTCCTATTGGTCTTGTTTCCATGGTTTCCAAATTCTA 1203
||||||||||||||||| | | |||| |||||||||| || |||||||| ||||||||
Sbjct 838 ATTGACAGCTACTCACA--CAC-TCCTGTTGGTCTTGTCTCAATGGTTTCTAAATTCTA 893
> Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2
Length=1723
Score = 87.9 bits (47), Expect = 2e-16
Identities = 155/205 (76%), Gaps = 16/205 (8%)
Strand=Plus/Plus
Query 437 GGTTTACTTCGCTGTGGGAAGAGTTGCAGGCTGA-GATGGAC-AAACTATCTGAGACCAG 494
||||| || || ||||| || |||||| || | | | ||| | || | |||| | |||
Sbjct 231 GGTTTGCTCCGGTGTGGCAAAAGTTGCCGG-TTACGGTGGGCGAATC-ATCTCCGGCCAA 288
Query 495 A-CATAAAGAGAGG-TCCTTTCACTGCTGATGAAGAGAAA-CTTGTTATCCAGCTTCATG 551
| | |||||| ||| | |||| ||| |||||||||| ||| | | ||| ||||||| |
Sbjct 289 ATC-TAAAGAAAGGAT-CTTTTACTCCTGATGAAGA-AAAGATCATCATCGAGCTTCACG 345
Query 552 CCATTCTCGGCAACAGGTGGGCTGC-TATTGCAGCACAGCTT-CCAGGAAGAACAGACAA 609
| | ||||| |||| |||||| | ||| || | ||| || || ||||||||||||||
Sbjct 346 CTAAGCTCGGAAACAAATGGGCT-CGTATGGCTTCTCAG-TTACCGGGAAGAACAGACAA 403
Query 610 CGAGATCAAGAACTTAT-GGAACAC 633
|||||||||||||| || |||||||
Sbjct 404 CGAGATCAAGAACT-ATTGGAACAC 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5