BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61260.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486603 jgi|Araly1|486603|fgenesh2_kg.5__2595__AT3G61260.1 1214 0.0
Ahg913404 jgi|Araly1|913404|Al_scaffold_0001_3658 134 1e-30
Ahg907825 jgi|Araly1|907825|Al_scaffold_0002_906 113 2e-24
Ahg935106 jgi|Araly1|935106|scaffold_403094.1 73.1 3e-12
> Ahg486603 jgi|Araly1|486603|fgenesh2_kg.5__2595__AT3G61260.1
Length=838
Score = 1214 bits (657), Expect = 0.0
Identities = 783/843 (93%), Gaps = 12/843 (1%)
Strand=Plus/Plus
Query 56 CTCTCTATTTCTTCGGCTGAGAGGCGGCGACTATGGCGGAGGAACAGAAGATAGCGTTAG 115
|||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 1 CTCTCTGTTTCTTCGGCTGAGA---GACGACTATGGCTGAGGAACAGAAGATAGCGTTAG 57
Query 116 AATCAGAATCTCCGGCGAAGGTTACGACTCCTGCTCCAGCAGATACACCGGCTCCAGCTC 175
|||||||||||||||||||| || |||| ||||| ||||| | |||||||||||||
Sbjct 58 CCTCAGAATCTCCGGCGAAGGTCCCGGCTCCAGCTCCCGCAGAGATTCCGGCTCCAGCTC 117
Query 176 CGGCAGAGATTCCGGCTCCA------GCTCCAGCTCCGACTCCGGCTGATGTCACGAAAG 229
| |||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 118 CCGCAGAGATTCCGGCTCCAGCTCCGGCTCCGGCTCCGACTCCGGCTGATCTCACGAAAG 177
Query 230 ACGTTGCAGAGGAGAAAATTCAAAACCCACCTCCGGAGCAAATTTTCGATGACTCCAAAG 289
| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 ATGTTGGAGAGGAGCAAATTCAAAACCCACCTCCGGAGCAAATTTCCGATGACTCCAAAG 237
Query 290 CCCTTACTGTTGTTGAGAAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCAT 349
|||| ||||||| |||||||||||||||||||||||||||| |||| || ||||||| |
Sbjct 238 CCCTCGCTGTTGTCGAGAAACCTGTAGAAGAGCCTGCACCGGTGAAATCTTCGTCTGCTT 297
Query 350 CGCTCGATAGAGATGTTAAGCTAGCTGATTTGTCAAAGGAAAAGAGATTGTCTTTCGTCA 409
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 298 CGCTTGATAGAGATGTTAAGCTAGCTGATTTGTCAAAGGAGAAGAGATTGTCTTTTGTCA 357
Query 410 GAGCGTGGGAAGAAAGCGAAAAGAGCAAAGCAGAGAACAAAGCTGAGAAGAAGATTGCAG 469
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 358 GAGCGTGGGAAGAGAGCGAAAAGAGCAAAGCAGAGAACAAAGCTGAGAAGAAGATTGCTG 417
Query 470 ATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCG 529
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 418 ATGTTCATGCTTGGGAAAACAGCAAGAAAGCAGCTCTTGAAGCGCAACTCAAGAAAATCG 477
Query 530 AGGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAG 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 AGGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAAGTTGCAG 537
Query 590 CGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAGCTAAGCGTGGAGAAGACG 649
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAGCTAAGCGTGGAGAAGACA 597
Query 650 TTCTTAAAGCAGAAGAAACGGCTGCTAAATACAGAGCCACTGGAATTGTTCCAAAGGCAA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCTTAAAGCAGAAGAAACGGCTGCTAAATACAGAGCCACTGGAATTGTTCCAAAGGCAA 657
Query 710 CTTGTGGATGTTTCTAATCTTGAATTTGCGAATCAAAGTTTCAAGACTTCGTAACTGTAA 769
||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 658 CTTGTGGATGTTTCTAATCTTGAATTTGCAAATCAAATTTTCAAGACTTTGTAACTGTAA 717
Query 770 AGTGTAATCAAATTTCTCTGTTCTCTTTAATGGCTTGTAATGTTGTTTGTATATTGATTT 829
||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 AGTGTAAACAAATTTCTCTCTTCTCTTCAATGGCTTGTAATGTTGTTTGTATATTGATTT 777
Query 830 TGTGTGTGACAATCAGAGTGAAAAATATGTTTCATTGTTT-TCTTTCCGCAATTTTCTCA 888
|||||| ||||||||||||||||||||||| ||||| || | || | ||||||||||||
Sbjct 778 TGTGTGCAACAATCAGAGTGAAAAATATGTT-CATTGATTATGTT-CTGCAATTTTCTCA 835
Query 889 AGC 891
|||
Sbjct 836 AGC 838
> Ahg913404 jgi|Araly1|913404|Al_scaffold_0001_3658
Length=438
Score = 134 bits (72), Expect = 1e-30
Identities = 87/94 (93%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 532 GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAGCG 591
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 346 GAGCGACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAAGTTGCAGCC 405
Query 592 ATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGA 625
|||||||||||||| ||| |||||||| || |||
Sbjct 406 ATTCACAAGGAAGCTGAACAGAGAAGA-CATTGA 438
> Ahg907825 jgi|Araly1|907825|Al_scaffold_0002_906
Length=324
Score = 113 bits (61), Expect = 2e-24
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 558 GTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAG 317
Query 618 AGCAATGA 625
| || |||
Sbjct 318 A-CATTGA 324
> Ahg935106 jgi|Araly1|935106|scaffold_403094.1
Length=292
Score = 73.1 bits (39), Expect = 3e-12
Identities = 48/52 (92%), Gaps = 1/52 (2%)
Strand=Plus/Minus
Query 580 AAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAG 631
|||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 138 AAGGTTGCAGCGATTCACAAGGAAGCAGGAGATTGAAGAGCAATGAT-GAAG 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5