BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61270.1 Length=1783 Score E Sequences producing significant alignments: (Bits) Value Ahg486604 jgi|Araly1|486604|fgenesh2_kg.5__2596__AT3G61270.1 2381 0.0 Ahg483721 jgi|Araly1|483721|fgenesh2_kg.4__2781__AT2G45830.1 1046 0.0 > Ahg486604 jgi|Araly1|486604|fgenesh2_kg.5__2596__AT3G61270.1 Length=1538 Score = 2381 bits (1289), Expect = 0.0 Identities = 1461/1545 (95%), Gaps = 8/1545 (1%) Strand=Plus/Plus Query 120 ATGAAGATGAATAACAACGACGGCCAACATAATAAAACGGTGACATTTCCTCGAAAAAGC 179 ||||||||||||| ||| | || ||||| ||||| ||||||| ||||||||||||||| Sbjct 1 ATGAAGATGAATATCAAAGCCGACCAAC---ATAAACCGGTGACGTTTCCTCGAAAAAGC 57 Query 180 ATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTATCTTAGACTTA 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 58 ATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTCTCTTAGACTTT 117 Query 240 CTGGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCTAACAACAAAGACAAAAGAA 299 || ||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||| Sbjct 118 CTTGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCGAATAACGAAGAGAAAAGAA 177 Query 300 CCAAATCCTTACGGATGCGACTTCGTACAGAACCAATCAAGTCAAACTCCTATCTCACAA 359 ||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||| Sbjct 178 CCAAATCCTTACGGATGCGACTTCGTACAAAACCAATCAAACCAAACTCATTTCTCACAA 237 Query 360 AACCGCAAATCGAGATTAAACCCCAACAACAGTTCAAAATCATCCACGTGTCCTTCTTAT 419 ||||| ||||||||||| || | | | ||||||||||||||||||||||||||||| Sbjct 238 AACCGTGCCTCGAGATTAAATCCTATC--C-GTTCAAAATCATCCACGTGTCCTTCTTAT 294 Query 420 TTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAACGGGGATAACTAGAGGGATG 479 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 295 TTCCGTTGGATCCATGAAGATCTACGGCCGTGGAAACAAACGGGGATAACTAGAGGGATG 354 Query 480 ATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTAC 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 ATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTAC 414 Query 540 GTTAAGAGATATAAGAAGTCAATACAAACAAGAGATGAATTTACTCTGTGGGGAATCTTA 599 ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| || Sbjct 415 GTTAAGAGATATAGGAAGTCAATTCAAACAAGAGATGATTTTACTCTGTGGGGAATCGTA 474 Query 600 CAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTCGAGCTAATGTTCGACGCTGAT 659 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 475 CAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTGGAGCTTATGTTCGACGCTGAT 534 Query 660 GATCGTCCCGTCGTCCGATCAGTTGACTTTATTGGTCAACAGAAGGAACCACCTCCAGTT 719 || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 535 GACCGTCCCGTCGTCCGATCAGCTGACTTTATTGGTCAACAGAAGAAACCACCTCCAGTT 594 Query 720 TTCCGTTACTGTTCAGATGACGCAAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGG 779 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 595 TTCCGTTACTGTTCAGATGACGCCAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGG 654 Query 780 GGCTGGGCTGAAGTGAACGTAAAACCATGGGGGA-AATCGTTGGAGGCAATAAAAGAAGG 838 |||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||| Sbjct 655 GGCTGGGCTGAAGTGAACATAAAGCCAT-GGGGAGAATCGTTGGAGGCAATAAAAGAAGG 713 Query 839 GAACAGTATGACGCAATGGAAGGACCGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTA 898 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 714 GAACAATATGACGCAATGGAAGGAACGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTA 773 Query 899 TGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGCTACAGAACATGAAGAGTGGAA 958 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 774 TGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGTTTCAGAACATGAAGAGTGGAA 833 Query 959 TACTCGTCTCTATATTCAGGATTGGGATAAAGAAACAAAAGAAGGATTCAAGAACTCAAA 1018 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 834 TACTCGTCTCTATATTCAGGATTGGGATAAAGAATCAAAAGAAGGATACAAGAACTCAAA 893 Query 1019 TCTAGAGAACCAGTGCACTCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGT 1078 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 894 TCTAGAGAACCAGTGCACCCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGT 953 Query 1079 TAGCGAGAAATACATAATGGCATGTGACTCAATGACATTATATGTAAAACCAAGATTCTA 1138 ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 954 TAGTGAGAAATACATAATGGCATGCGACTCAATGACATTATATGTTAAACCAAGATTCTA 1013 Query 1139 CGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTC 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 CGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTC 1073 Query 1199 CAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGCAATACACACGAGGACAAGGCTCG 1258 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1074 CAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGAAATACACACGTGGACAAGGCTCG 1133 Query 1259 TGAGATAGGAGAGGTAGGAAGTAGATTTATAAGAGAGGAGGTGAATATGCAGTATGTGTA 1318 ||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||| Sbjct 1134 TGAGATAGGAGAGCTAGGGAGTAGATTTATAAGAGAGGAAGTGAATATGAAGTATGTGTA 1193 Query 1319 TGACTATATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGAT 1378 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TGACTACATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGAT 1253 Query 1379 TCCGTTAGATGCAGAGGAGATCACGCCGGATAGTATGGGGTGTCCCGCGACGGAAAGGTG 1438 ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1254 TCCTTTGGATGCGGAGGAGATCACGCCGGATAGTATGGGATGTCCCGCGACGGAACGGTG 1313 Query 1439 GAGAGATTTTAAGGCGGAGTCAATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGAT 1498 ||||||||| | ||||||||| ||| || ||||||| |||||||||||||||||||| || Sbjct 1314 GAGAGATTTCATGGCGGAGTCTATGGTTCTATCTCCAAGTGAAGAGTCTCCTTGTGAAAT 1373 Query 1499 GCTTCCTCCTTATGATCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAAC 1558 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 GCTTCCTCCTTATGACCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAAC 1433 Query 1559 TCGTCAGGTTGAGTTGTGGGAAAACCAATACTTTCAAAATCTTACCAACAAACCTTAAAT 1618 |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 1434 ACGTCAGGTTGAGTTGTGGGAAAACAAATACTTTCAAGATCTTACCAACAAAACTTAAAT 1493 Query 1619 TGTTTTGTTTTTTCCTTCTTCGTTGACGAGATCAACCGCAACCAA 1663 |||| |||||||| |||| || ||||||||||||||||||||||| Sbjct 1494 TGTTCTGTTTTTTTCTTCCTCATTGACGAGATCAACCGCAACCAA 1538 > Ahg483721 jgi|Araly1|483721|fgenesh2_kg.4__2781__AT2G45830.1 Length=1945 Score = 1046 bits (566), Expect = 0.0 Identities = 1006/1216 (83%), Gaps = 39/1216 (3%) Strand=Plus/Plus Query 400 CATCCACGTGTCCTTCTTATTTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAA 459 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | | Sbjct 614 CATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGGCCATGGAAAGAGA 673 Query 460 CGGGGATAACTAGAGGGATGATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGA 519 | || ||||| ||||||||| | ||| ||||||| || ||||||||||| || | || | Sbjct 674 CAGGTATAACGAGAGGGATGCTTGAAAAAGCGAGGAGGACGGCGCATTTCAGGGTAGTAA 733 Query 520 TCCGT-AACGGGAAG-GCGTACGTTAAG-AGATATAAG-AAGTCAATACAAACAAGAGAT 575 ||| | ||||| || | |||||||||| || || || || ||||| || || |||||| Sbjct 734 TCC-TCGACGGG-AGAGTGTACGTTAAGAAG-TA-CAGAAACTCAATCCAGACTAGAGAT 789 Query 576 GAATTTACTCTGTGGGGAATCTTACAGTTGTTACGGTGGTACCCTGGTAAATTACCTGAT 635 | |||||||||||||| ||| |||||||| ||||||||||||| |||| | | || ||| Sbjct 790 GTTTTTACTCTGTGGGGTATCGTACAGTTGCTACGGTGGTACCCAGGTAGACTGCCAGAT 849 Query 636 CTCGAGCTAATGTTCGACGCTGATGATCGTCCCGTCGTCCGATC-AGTTGACTTT-ATTG 693 || ||||| ||||| ||| | |||||| | || ||||||||| | |||||| | | Sbjct 850 CTTGAGCTTATGTTTGACCCAGATGATAGACCAACCGTCCGATCTA-AAGACTTTCA-AG 907 Query 694 GTCAACAG-A--AGGAACCACCTCCAGTT-TTCCGTTACTGTTCAGATGACGCAAGCTTG 749 |||||||| | || || ||||| || |||||||| || || |||||||| |||||| Sbjct 908 GTCAACAGCACCCGGCCCCGCCTCC-TTTATTCCGTTATTGCTCTGATGACGCCAGCTTG 966 Query 750 GACATTGTCTTCCCTGATTGGTCCTTTTGGGGCTGGGCTGAAGTGAACGTAAAACCATGG 809 || || |||||||||||||||||||| |||||||||||||| || || |||| || ||| Sbjct 967 GATATCGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAGCCTTGG 1026 Query 810 GGGAAATCGTTGGAGGCAATAAAAGAAGGGAAC-AGTATGACGCAATGGAAGGACCGCGT 868 | |||||| | | ||| ||| ||||||||||| || |||||||||||||| |||||||| Sbjct 1027 GCTAAATCGCTAGTGGCGATAGAAGAAGGGAACAAG-ATGACGCAATGGAAAGACCGCGT 1085 Query 869 GGCGTACGCTTATTGGAGAGGTAATCCTTATGTTGATCCTGGAAGAGGAGATCTTCTCAA 928 |||||| |||||||||||||| ||||| |||| | ||| ||| |||||||||| | Sbjct 1086 GGCGTATGCTTATTGGAGAGGAAATCCCAATGTGGCTCCAACTAGAAGAGATCTTCT-TA 1144 Query 929 G-TGTAATG-CTACAGAACATGAAGAGTGGAATACTCGTCTCTATATTCAGGATTGGGAT 986 | ||||||| || ||| || ||||| ||||| || |||||||| ||||||||||||||| Sbjct 1145 GATGTAATGTCT-CAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTGGGAT 1203 Query 987 AAAGAAACAAAAGAAGGATTCAAGAACTCAAATCTAGAGAACCAGTGC-ACTCATAGATA 1045 | |||| | | ||||||||||||||| ||||| ||||||||||| ||| || || || || Sbjct 1204 AGAGAATCTAGAGAAGGATTCAAGAATTCAAACCTAGAGAACCAATGCAAC-CACAGGTA 1262 Query 1046 CAAGATATATATAGAAGGATGGGCATGGTCGGTTAGCGAGAAATACATAATGGCATGTGA 1105 |||||| ||||||||||||||||||||||| || || |||||||| |||||||||||||| Sbjct 1263 CAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATGTGA 1322 Query 1106 CTCAATGACATTATATGTAAAACC-AAGATTCTACGATTTCTACATACGAGGAATGATGC 1164 ||||||||| |||| || | ||| | | ||||| ||||| ||||||||||||||||||| Sbjct 1323 TTCAATGACACTATACGTGAGACCTATG-TTCTATGATTTTTACATACGAGGAATGATGC 1381 Query 1165 CATTACAACATTATTGGCCAATCAGAGACGATTCCAAGTGTACTTCTCTCAAATTCGCCG 1224 ||||||||||||||||||| ||||||||| | || ||||||||||| ||||||||||||| Sbjct 1382 CATTACAACATTATTGGCCCATCAGAGACAACTCTAAGTGTACTTCCCTCAAATTCGCCG 1441 Query 1225 TACATTGGGGCAATACACACGAGGACAAGGCTCGTGAGATAGGAGAGGTAGGAAGTAGAT 1284 |||||||||| ||||| || |||| |||| || |||||||||| | ||||||||| | Sbjct 1442 TACATTGGGGAAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGAAGTAGGT 1501 Query 1285 TTATAAGAGAGGAGGTGAATATGCAGTATGTGTATGACTATATGTTTCATTT-ACTCAAA 1343 |||| |||||||| ||||| ||| | |||||||||||||| ||||| ||||| | | || Sbjct 1502 TTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGA-TGAAC 1560 Query 1344 GAGTATGCAACACTCTTGAAATTTAAGCCGGAGATTCCGT-TAGATG-CAGAGGAGATCA 1401 |||||||||| ||| ||||| ||||| ||||||||||||| || | || ||||| | Sbjct 1561 GAGTATGCAAAACTTTTGAAGTTTAAACCGGAGATTCCGTGGGGA-GCCA-CCGAGATTA 1618 Query 1402 CGCCGGATAGTATGGGGTGTCC-CGCGACGGAAAGGTGGAGAGATTTTAAGGCGGAGTCA 1460 |||| ||||||||||| || || ||||||| ||||||||||||| | ||||||||| Sbjct 1619 CGCCTGATAGTATGGGCTG-CCAAGCGACGGGGCGGTGGAGAGATTTCATGGCGGAGTCT 1677 Query 1461 ATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGATGC-TTCCTCCTTATGATCCTCT 1519 ||| | || | ||||||||||||||||||||||||||||| ||| ||||| | | |||| Sbjct 1678 ATGGTGATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTC-TCCTTTTAACCCTC- 1735 Query 1520 AGC-TTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAACTCGTCAGGTTGAGTTGTGGG 1578 || ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1736 AGGATTTAAGAGAGGTTCTTGAGAGAAAAGCTAATTTGACTCGTCAAGTTGAGTTGTGGG 1795 Query 1579 AAAACCAATACTTTCA 1594 || | ||||||||||| Sbjct 1796 AAGATCAATACTTTCA 1811 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66924560465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5