BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61270.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486604 jgi|Araly1|486604|fgenesh2_kg.5__2596__AT3G61270.1 2381 0.0
Ahg483721 jgi|Araly1|483721|fgenesh2_kg.4__2781__AT2G45830.1 1046 0.0
> Ahg486604 jgi|Araly1|486604|fgenesh2_kg.5__2596__AT3G61270.1
Length=1538
Score = 2381 bits (1289), Expect = 0.0
Identities = 1461/1545 (95%), Gaps = 8/1545 (1%)
Strand=Plus/Plus
Query 120 ATGAAGATGAATAACAACGACGGCCAACATAATAAAACGGTGACATTTCCTCGAAAAAGC 179
||||||||||||| ||| | || ||||| ||||| ||||||| |||||||||||||||
Sbjct 1 ATGAAGATGAATATCAAAGCCGACCAAC---ATAAACCGGTGACGTTTCCTCGAAAAAGC 57
Query 180 ATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTATCTTAGACTTA 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 58 ATCGTGAAGGCTACTGTTTTCATCGTCGTTCTATTCATTTCAGCTGCTCTCTTAGACTTT 117
Query 240 CTGGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCTAACAACAAAGACAAAAGAA 299
|| ||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 118 CTTGGCTATCTCGATTTCAATGCTTTTGCAGGTTTAAAGCGAATAACGAAGAGAAAAGAA 177
Query 300 CCAAATCCTTACGGATGCGACTTCGTACAGAACCAATCAAGTCAAACTCCTATCTCACAA 359
||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||
Sbjct 178 CCAAATCCTTACGGATGCGACTTCGTACAAAACCAATCAAACCAAACTCATTTCTCACAA 237
Query 360 AACCGCAAATCGAGATTAAACCCCAACAACAGTTCAAAATCATCCACGTGTCCTTCTTAT 419
||||| ||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 238 AACCGTGCCTCGAGATTAAATCCTATC--C-GTTCAAAATCATCCACGTGTCCTTCTTAT 294
Query 420 TTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAACGGGGATAACTAGAGGGATG 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 TTCCGTTGGATCCATGAAGATCTACGGCCGTGGAAACAAACGGGGATAACTAGAGGGATG 354
Query 480 ATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTAC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGATCCGTAACGGGAAGGCGTAC 414
Query 540 GTTAAGAGATATAAGAAGTCAATACAAACAAGAGATGAATTTACTCTGTGGGGAATCTTA 599
||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 415 GTTAAGAGATATAGGAAGTCAATTCAAACAAGAGATGATTTTACTCTGTGGGGAATCGTA 474
Query 600 CAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTCGAGCTAATGTTCGACGCTGAT 659
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 475 CAGTTGTTACGGTGGTACCCTGGTAAATTACCTGATCTGGAGCTTATGTTCGACGCTGAT 534
Query 660 GATCGTCCCGTCGTCCGATCAGTTGACTTTATTGGTCAACAGAAGGAACCACCTCCAGTT 719
|| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 535 GACCGTCCCGTCGTCCGATCAGCTGACTTTATTGGTCAACAGAAGAAACCACCTCCAGTT 594
Query 720 TTCCGTTACTGTTCAGATGACGCAAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGG 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 TTCCGTTACTGTTCAGATGACGCCAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGG 654
Query 780 GGCTGGGCTGAAGTGAACGTAAAACCATGGGGGA-AATCGTTGGAGGCAATAAAAGAAGG 838
|||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||
Sbjct 655 GGCTGGGCTGAAGTGAACATAAAGCCAT-GGGGAGAATCGTTGGAGGCAATAAAAGAAGG 713
Query 839 GAACAGTATGACGCAATGGAAGGACCGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTA 898
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 GAACAATATGACGCAATGGAAGGAACGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTA 773
Query 899 TGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGCTACAGAACATGAAGAGTGGAA 958
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 774 TGTTGATCCTGGAAGAGGAGATCTTCTCAAGTGTAATGTTTCAGAACATGAAGAGTGGAA 833
Query 959 TACTCGTCTCTATATTCAGGATTGGGATAAAGAAACAAAAGAAGGATTCAAGAACTCAAA 1018
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 834 TACTCGTCTCTATATTCAGGATTGGGATAAAGAATCAAAAGAAGGATACAAGAACTCAAA 893
Query 1019 TCTAGAGAACCAGTGCACTCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGT 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCTAGAGAACCAGTGCACCCATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGT 953
Query 1079 TAGCGAGAAATACATAATGGCATGTGACTCAATGACATTATATGTAAAACCAAGATTCTA 1138
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 954 TAGTGAGAAATACATAATGGCATGCGACTCAATGACATTATATGTTAAACCAAGATTCTA 1013
Query 1139 CGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CGATTTCTACATACGAGGAATGATGCCATTACAACATTATTGGCCAATCAGAGACGATTC 1073
Query 1199 CAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGCAATACACACGAGGACAAGGCTCG 1258
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1074 CAAGTGTACTTCTCTCAAATTCGCCGTACATTGGGGAAATACACACGTGGACAAGGCTCG 1133
Query 1259 TGAGATAGGAGAGGTAGGAAGTAGATTTATAAGAGAGGAGGTGAATATGCAGTATGTGTA 1318
||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1134 TGAGATAGGAGAGCTAGGGAGTAGATTTATAAGAGAGGAAGTGAATATGAAGTATGTGTA 1193
Query 1319 TGACTATATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGAT 1378
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGACTACATGTTTCATTTACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGAT 1253
Query 1379 TCCGTTAGATGCAGAGGAGATCACGCCGGATAGTATGGGGTGTCCCGCGACGGAAAGGTG 1438
||| || ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1254 TCCTTTGGATGCGGAGGAGATCACGCCGGATAGTATGGGATGTCCCGCGACGGAACGGTG 1313
Query 1439 GAGAGATTTTAAGGCGGAGTCAATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGAT 1498
||||||||| | ||||||||| ||| || ||||||| |||||||||||||||||||| ||
Sbjct 1314 GAGAGATTTCATGGCGGAGTCTATGGTTCTATCTCCAAGTGAAGAGTCTCCTTGTGAAAT 1373
Query 1499 GCTTCCTCCTTATGATCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAAC 1558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GCTTCCTCCTTATGACCCTCTAGCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAAC 1433
Query 1559 TCGTCAGGTTGAGTTGTGGGAAAACCAATACTTTCAAAATCTTACCAACAAACCTTAAAT 1618
|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1434 ACGTCAGGTTGAGTTGTGGGAAAACAAATACTTTCAAGATCTTACCAACAAAACTTAAAT 1493
Query 1619 TGTTTTGTTTTTTCCTTCTTCGTTGACGAGATCAACCGCAACCAA 1663
|||| |||||||| |||| || |||||||||||||||||||||||
Sbjct 1494 TGTTCTGTTTTTTTCTTCCTCATTGACGAGATCAACCGCAACCAA 1538
> Ahg483721 jgi|Araly1|483721|fgenesh2_kg.4__2781__AT2G45830.1
Length=1945
Score = 1046 bits (566), Expect = 0.0
Identities = 1006/1216 (83%), Gaps = 39/1216 (3%)
Strand=Plus/Plus
Query 400 CATCCACGTGTCCTTCTTATTTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAA 459
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |
Sbjct 614 CATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGGCCATGGAAAGAGA 673
Query 460 CGGGGATAACTAGAGGGATGATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGA 519
| || ||||| ||||||||| | ||| ||||||| || ||||||||||| || | || |
Sbjct 674 CAGGTATAACGAGAGGGATGCTTGAAAAAGCGAGGAGGACGGCGCATTTCAGGGTAGTAA 733
Query 520 TCCGT-AACGGGAAG-GCGTACGTTAAG-AGATATAAG-AAGTCAATACAAACAAGAGAT 575
||| | ||||| || | |||||||||| || || || || ||||| || || ||||||
Sbjct 734 TCC-TCGACGGG-AGAGTGTACGTTAAGAAG-TA-CAGAAACTCAATCCAGACTAGAGAT 789
Query 576 GAATTTACTCTGTGGGGAATCTTACAGTTGTTACGGTGGTACCCTGGTAAATTACCTGAT 635
| |||||||||||||| ||| |||||||| ||||||||||||| |||| | | || |||
Sbjct 790 GTTTTTACTCTGTGGGGTATCGTACAGTTGCTACGGTGGTACCCAGGTAGACTGCCAGAT 849
Query 636 CTCGAGCTAATGTTCGACGCTGATGATCGTCCCGTCGTCCGATC-AGTTGACTTT-ATTG 693
|| ||||| ||||| ||| | |||||| | || ||||||||| | |||||| | |
Sbjct 850 CTTGAGCTTATGTTTGACCCAGATGATAGACCAACCGTCCGATCTA-AAGACTTTCA-AG 907
Query 694 GTCAACAG-A--AGGAACCACCTCCAGTT-TTCCGTTACTGTTCAGATGACGCAAGCTTG 749
|||||||| | || || ||||| || |||||||| || || |||||||| ||||||
Sbjct 908 GTCAACAGCACCCGGCCCCGCCTCC-TTTATTCCGTTATTGCTCTGATGACGCCAGCTTG 966
Query 750 GACATTGTCTTCCCTGATTGGTCCTTTTGGGGCTGGGCTGAAGTGAACGTAAAACCATGG 809
|| || |||||||||||||||||||| |||||||||||||| || || |||| || |||
Sbjct 967 GATATCGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAGCCTTGG 1026
Query 810 GGGAAATCGTTGGAGGCAATAAAAGAAGGGAAC-AGTATGACGCAATGGAAGGACCGCGT 868
| |||||| | | ||| ||| ||||||||||| || |||||||||||||| ||||||||
Sbjct 1027 GCTAAATCGCTAGTGGCGATAGAAGAAGGGAACAAG-ATGACGCAATGGAAAGACCGCGT 1085
Query 869 GGCGTACGCTTATTGGAGAGGTAATCCTTATGTTGATCCTGGAAGAGGAGATCTTCTCAA 928
|||||| |||||||||||||| ||||| |||| | ||| ||| |||||||||| |
Sbjct 1086 GGCGTATGCTTATTGGAGAGGAAATCCCAATGTGGCTCCAACTAGAAGAGATCTTCT-TA 1144
Query 929 G-TGTAATG-CTACAGAACATGAAGAGTGGAATACTCGTCTCTATATTCAGGATTGGGAT 986
| ||||||| || ||| || ||||| ||||| || |||||||| |||||||||||||||
Sbjct 1145 GATGTAATGTCT-CAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTGGGAT 1203
Query 987 AAAGAAACAAAAGAAGGATTCAAGAACTCAAATCTAGAGAACCAGTGC-ACTCATAGATA 1045
| |||| | | ||||||||||||||| ||||| ||||||||||| ||| || || || ||
Sbjct 1204 AGAGAATCTAGAGAAGGATTCAAGAATTCAAACCTAGAGAACCAATGCAAC-CACAGGTA 1262
Query 1046 CAAGATATATATAGAAGGATGGGCATGGTCGGTTAGCGAGAAATACATAATGGCATGTGA 1105
|||||| ||||||||||||||||||||||| || || |||||||| ||||||||||||||
Sbjct 1263 CAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATGTGA 1322
Query 1106 CTCAATGACATTATATGTAAAACC-AAGATTCTACGATTTCTACATACGAGGAATGATGC 1164
||||||||| |||| || | ||| | | ||||| ||||| |||||||||||||||||||
Sbjct 1323 TTCAATGACACTATACGTGAGACCTATG-TTCTATGATTTTTACATACGAGGAATGATGC 1381
Query 1165 CATTACAACATTATTGGCCAATCAGAGACGATTCCAAGTGTACTTCTCTCAAATTCGCCG 1224
||||||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||
Sbjct 1382 CATTACAACATTATTGGCCCATCAGAGACAACTCTAAGTGTACTTCCCTCAAATTCGCCG 1441
Query 1225 TACATTGGGGCAATACACACGAGGACAAGGCTCGTGAGATAGGAGAGGTAGGAAGTAGAT 1284
|||||||||| ||||| || |||| |||| || |||||||||| | ||||||||| |
Sbjct 1442 TACATTGGGGAAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGAAGTAGGT 1501
Query 1285 TTATAAGAGAGGAGGTGAATATGCAGTATGTGTATGACTATATGTTTCATTT-ACTCAAA 1343
|||| |||||||| ||||| ||| | |||||||||||||| ||||| ||||| | | ||
Sbjct 1502 TTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGA-TGAAC 1560
Query 1344 GAGTATGCAACACTCTTGAAATTTAAGCCGGAGATTCCGT-TAGATG-CAGAGGAGATCA 1401
|||||||||| ||| ||||| ||||| ||||||||||||| || | || ||||| |
Sbjct 1561 GAGTATGCAAAACTTTTGAAGTTTAAACCGGAGATTCCGTGGGGA-GCCA-CCGAGATTA 1618
Query 1402 CGCCGGATAGTATGGGGTGTCC-CGCGACGGAAAGGTGGAGAGATTTTAAGGCGGAGTCA 1460
|||| ||||||||||| || || ||||||| ||||||||||||| | |||||||||
Sbjct 1619 CGCCTGATAGTATGGGCTG-CCAAGCGACGGGGCGGTGGAGAGATTTCATGGCGGAGTCT 1677
Query 1461 ATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGATGC-TTCCTCCTTATGATCCTCT 1519
||| | || | ||||||||||||||||||||||||||||| ||| ||||| | | ||||
Sbjct 1678 ATGGTGATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTC-TCCTTTTAACCCTC- 1735
Query 1520 AGC-TTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAACTCGTCAGGTTGAGTTGTGGG 1578
|| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1736 AGGATTTAAGAGAGGTTCTTGAGAGAAAAGCTAATTTGACTCGTCAAGTTGAGTTGTGGG 1795
Query 1579 AAAACCAATACTTTCA 1594
|| | |||||||||||
Sbjct 1796 AAGATCAATACTTTCA 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5