BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61280.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939170 jgi|Araly1|939170|scaffold_503361.1 521 6e-147
Ahg483723 jgi|Araly1|483723|fgenesh2_kg.4__2783__AT2G45840.1 507 2e-142
Ahg899091 jgi|Araly1|899091|Al_scaffold_0005_3057 372 6e-102
> Ahg939170 jgi|Araly1|939170|scaffold_503361.1
Length=731
Score = 521 bits (282), Expect = 6e-147
Identities = 406/465 (87%), Gaps = 11/465 (2%)
Strand=Plus/Plus
Query 501 AACAGCAACACAACACAAACATGTCCTTCAAATTACCCAACCAAG-TTCGAACCAGCGAT 559
||| ||||| ||| ||||||||| ||||||||||| |||| | || ||||||||||||||
Sbjct 232 AACTGCAACGCAAAACAAACATGCCCTTCAAATTATCCAAGC-AGATTCGAACCAGCGAT 290
Query 560 CTCTTCCTCGGAGACATGTCCTGACTACTTCAAG-TGGATCCACCGAGACTTAAAGGTAT 618
|||||||||||| || ||||||||||||||| || |||||||| | |||| |||| | ||
Sbjct 291 CTCTTCCTCGGAAACTTGTCCTGACTACTTC-AGATGGATCCAACAAGACCTAAAAGCAT 349
Query 619 GGCAAAAGACAGGGATCACAAGGGAAACACTAGAGAGAGCAAGACCAAATGCTCACTTCA 678
|| || |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 350 GGGAAGAGACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAAGCTCATTTCA 409
Query 679 GGATAGTGATAAAGTCAGGGAGATTGTACGTTCATCAATACGAGAAAGCATT-TCAGACA 737
|| ||||||| ||||||||||||||||| |||||||| ||||| || || || | || ||
Sbjct 410 GGCTAGTGATTAAGTCAGGGAGATTGTATGTTCATCAGTACGACAAGGC-TTATGAGTCA 468
Query 738 AGAGATGTGT-TCACAATCTGGGGAATACTTCAGCTTCTAAGGATGTATCCTGGTCAAAT 796
|||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 469 AGAGATGT-TCTCACAATCTGGGGGATACTTCAGCTTCTAAGAATGTATCCTGGTCAAGT 527
Query 797 CCCTGACCTTGAGCTTCTCTTCCTCTGCCATGATAGACCCGCCATTTGGAAAAGAGACTT 856
|||||| ||||||||||||||| |||| ||||||| |||||| ||||||||| |||||||
Sbjct 528 CCCTGATCTTGAGCTTCTCTTCTTCTGTCATGATAAACCCGCTATTTGGAAACGAGACTT 587
Query 857 GAAGAAA--A-AACGAAAGGATACGTGGCCTCCTCCGCCGTTGTTTCACTACTGTGGTCA 913
| | || | ||| ||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct 588 TAGGCAACCACAACCAAATGCCACGTGGCCTCCTCCACCGTTGTTTCAGTACTGTGGTCA 647
Query 914 CCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGG 958
|||||| || |||| ||| ||||||||||||||||||||||||||
Sbjct 648 CCGTGAAGCCTACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGG 692
> Ahg483723 jgi|Araly1|483723|fgenesh2_kg.4__2783__AT2G45840.1
Length=1657
Score = 507 bits (274), Expect = 2e-142
Identities = 941/1249 (75%), Gaps = 101/1249 (8%)
Strand=Plus/Plus
Query 570 GAGACATGTCCTGACTACTTCAAGTGGATCCACCGA-GACTTA-AAGGTATGGCAAAAGA 627
||||| ||||| |||||||||| ||||||||| | | || ||| || | ||||| ||
Sbjct 371 GAGACTTGTCCAGACTACTTCAGGTGGATCCA-CAAGGATTTAGAA-GCATGGCGTGGGA 428
Query 628 CAGGGATCACAAGGGAAACACTAGAGAGAGC-A-AGACCAAATGCTCACTTCAGGATAG- 684
| || ||||| | || || |||||||||| | || ||| |||||||||||| | |
Sbjct 429 CTGGAATCACTCGAGAGACGTTAGAGAGAGCGAGTGA-TAAA-GCTCACTTCAGGCT-GA 485
Query 685 TGAT-AAAGTCAGGGAGATTGTACGTTCATCAATACGAGAAAGCATTTCAGACAAGAGAT 743
| || |||| ||| ||| |||| || || |||||| ||||| | |||||||||||||||
Sbjct 486 TAATAAAAG-GAGGAAGAGTGTATGTGCAACAATACAAGAAATCTTTTCAGACAAGAGAT 544
Query 744 GTGTTCACAATCTGGGGAATACTTCAGCTTCTAAGGATGTATCCTGGTCAAATCCCTGAC 803
|| ||||| || ||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 545 GTTTTCACTATATGGGGAATAGTACAGCTTCTAAGGATGTATCCTGGTCAAGTCCCTGAT 604
Query 804 CTTGAGCTTCTCTTCCTCTGCCATGA-TAGACCCGCCATTTGGAAAAGAGACT-TGAAG- 860
||||||||||||||| | |||||||| | ||| | || |||| |||||||| | | |
Sbjct 605 CTTGAGCTTCTCTTCATGTGCCATGACT-TACCTGAAATCTGGAGAAGAGACTAT-AGGC 662
Query 861 -AA-AAAACGA---AAGGAT-ACGTGGCCTCCTCCGCCGTTGTTTCACTACTGTGGTCA- 913
|| | | || || | | |||||||| ||||| || | || ||||| ||||| ||
Sbjct 663 CAAGACCAGGAGTCAATG-TGACGTGGCCACCTCCTCCACTCTTCCACTATTGTGGCCAT 721
Query 914 -CCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATGGCCTGAGCTGA 972
||| | ||| | |||||| || ||||| || |||||||| ||||| ||||| ||| | |
Sbjct 722 TCCG-G-TGCTTTCGACATTGTCTTCCCCGACTGGAGCTTTTGGGGCTGGCCGGAGATTA 779
Query 973 ATATAAAGGAGTGGAATAAATTATCT-GTGGC-ACTAAAAGAAGGGAACAAA-AAGGTGA 1029
| |||||||||||||||||| | | | | ||| | ||| |||||| ||| |||||||
Sbjct 780 ACATAAAGGAGTGGAATAAAATGT-TGGAGGCGA-TAAGTGAAGGG-TTAAAGAAGGTGA 836
Query 1030 AATGGGAAGATAGAGTTCCGTACGCTTATTGGAAAGGAAACCCT-CATGTTTCTCCTATA 1088
| |||||||| |||| || ||||| ||||||||||| || ||| | | || | | |
Sbjct 837 AGTGGGAAGAGAGAGAACCTTACGCATATTGGAAAGGGAATCCTGGA-G-TT-GGC-A-A 891
Query 1089 -AGAGGAGATCTTATGAGATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTA 1147
||| |||| | | ||| || | | | | |||| || ||||||| ||||||
Sbjct 892 GAGAAGAGA-C--CT--CATG-AA--T-T--GTC----ATGACCCCATGGTTCATCTCTA 936
Query 1148 T-GTCCAGGATTGGAGGAGTGAGATAGAGGCAGGGTT---CAGAGGA--TCGAACCTAGA 1201
| | |||||||||| ||| | | || |||||| || | |||| || ||||||||
Sbjct 937 TAG-CCAGGATTGGTGGA---A-AGAG-GGCAGGATTGGGTATAGGACTTCAAACCTAGA 990
Query 1202 AGATCAATGTACTCATAGATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGA 1261
||||||||| || || || || ||||| || ||||||||| || ||||| || |||||
Sbjct 991 AGATCAATGCACCCACAGGTACAAGATTTATGTAGAAGGAAGGGCTTGGTCAGTCAGCGA 1050
Query 1262 AAAGTATATACTT-TCGTGTGATAGTATGACTC-TGTTGGTTAAA-CCAGAGTACTACGA 1318
||||||||| || | ||||| |||||||||| | || | |||| ||| |||| ||
Sbjct 1051 GAAGTATATA-TTAGCTTGTGACAGTATGACTCTTCTT-G-TAAAGCCATTTTACTTTGA 1107
Query 1319 CTTTTTCTTC-CGAAG-TATGGTCCCAATGAAGCATTTTTGGCCTATTAGA-CAAAACAA 1375
||| ||| | |||| | | || |||||| |||||| ||||| |||||| | | ||
Sbjct 1108 CTTCTTC-ACTAGAAGCT-TAGTTCCAATGGAGCATTACTGGCCCATTAGACCTCGAGAA 1165
Query 1376 CAAATGTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAA-GGCAC 1434
|||||| ||||| | ||||| ||| | ||||| |||||||||||| |||| ||| |
Sbjct 1166 -AAATGTAGTGACATTGTCTTTGCTGTCCATTGGGGGAACAACAACACC-AAAAGGGC-C 1222
Query 1435 AAATC-ATAGGGAGACAA-GGAAGTGAGTACATGATG-AAGAACCTAAAGATGAAGTATG 1491
||| | ||| ||||| || ||||||| ||| || | | ||||| ||||||||||||||||
Sbjct 1223 AAAGCTATATGGAGA-AATGGAAGTGGGTATAT-ACGAAAGAATCTAAAGATGAAGTATG 1280
Query 1492 TGTATGATTACATGTTGTATGTGTTACAAGGCTATGGGAAATTGATGAAGTTGGATGT-G 1550
||||||||||||||||| || | || ||| |||||||||| ||||||| | || |||| |
Sbjct 1281 TGTATGATTACATGTTGCATCTATTGCAAAGCTATGGGAAGTTGATGACGATGAATGTAG 1340
Query 1551 ACAGTGCCTGAAA-ATGCCACGGAGGTTTGTTCAGAGACGATGGCTTGTTCGATTACTGA 1609
| ||| ||| || | |||| ||| || ||| | ||||| || |||||| | || | |
Sbjct 1341 A-AGTACCTCAAGGA-GCCAAGGAAGTGTGTCCGGAGACAATTGCTTGTCCAATCA---A 1395
Query 1610 TGGTGGACGGATCAGGCAGTGC-ATGGACGACTCGTTGGTTATGTCTCCGAGTGTCAAGG 1668
||| || || || || || | | ||||| ||||| ||||||||||| ||||| || ||||
Sbjct 1396 TGGAGGCCGAATGAGACACT-CTATGGATGACTCATTGGTTATGTCACCGAGCGTTAAGG 1454
Query 1669 CGGCTTGTGATTTGCCACCTTCTTATGGAGACTATGAGCTCAAGAAGTTTCGTAAGAA-A 1727
| |||||||| |||| || ||| || ||| |||||||||||| ||||| | |||| |
Sbjct 1455 CTGCTTGTGAGATGCCTCCAACTTTTGAAGAAGATGAGCTCAAGAGGTTTCTTGAGAAGA 1514
Query 1728 CAAGAAAGTGCGGAGAGA-AAGGTTGAGCAGTGGACCAATAAGTATTGG 1775
|||||||| |||| | ||| ||||| ||||||| ||| ||||||||
Sbjct 1515 -AAGAAAGTATTGAGAAAGAAG-TTGAGAAGTGGACTAATGAGTATTGG 1561
> Ahg899091 jgi|Araly1|899091|Al_scaffold_0005_3057
Length=339
Score = 372 bits (201), Expect = 6e-102
Identities = 224/235 (95%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 1455 AGTGAGTACATGATGAAGAACCTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTG 1514
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 37 AGTGAGTACATGATGAAGAACTTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTG 96
Query 1515 TTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCTGAAAATGCCACGGAG 1574
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 97 TTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCGGAAAATGACACGGAG 156
Query 1575 GTTTGTTCAGAGACGATGGCTTGTTCGATTACTGATGGTGGACGGATCAGGCAGTGCATG 1634
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 157 GTTTGTTCAAAGACGATGGCTTGTCCTATTACTGATGGTGGACGGATCAGGCAGTGCATT 216
Query 1635 GACGACTCGTTGGTTATGTCTCCGAGTGTCAAGGCGGCTTGTGATTTGCCACCTT 1689
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 217 GAT-ACTCGTTGGTTATGTCACCGAGCGTCAAGGCGGCTTGTGATTTGCCACCTT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5