BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61290.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939170 jgi|Araly1|939170|scaffold_503361.1 830 0.0
Ahg483723 jgi|Araly1|483723|fgenesh2_kg.4__2783__AT2G45840.1 507 1e-142
Ahg899091 jgi|Araly1|899091|Al_scaffold_0005_3057 246 3e-64
> Ahg939170 jgi|Araly1|939170|scaffold_503361.1
Length=731
Score = 830 bits (449), Expect = 0.0
Identities = 495/518 (96%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 1 ATGATGACTACATCAATATTGACAACGACAAACACAATCATCAAAATCCCTTTAAAGTGC 60
|||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 178 ATGATGACCATATCAATATTGACAACGACAAACACAATCATCAAGATCCCTTTAAACTGC 237
Query 61 AACGCAACACAAACATGTCCTTCAACTTATCCAAGCAGATTGGAACCAATGATCTCTTCC 120
||||||| ||||||||| ||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 238 AACGCAAAACAAACATGCCCTTCAAATTATCCAAGCAGATTCGAACCAGCGATCTCTTCC 297
Query 121 TTGGAAACTTGTCCTGACTACTTCAGATGGATCCAACAAGACCTAAAAGTATGGGAAGAG 180
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 TCGGAAACTTGTCCTGACTACTTCAGATGGATCCAACAAGACCTAAAAGCATGGGAAGAG 357
Query 181 ACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAGGCTCATTTCAGGCTAGTG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 ACAGGGATCACAAGGGAAACACTAGAGAGAGCAAAACCAAAAGCTCATTTCAGGCTAGTG 417
Query 241 ATAAAGTCAGGGAGATTGTACGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTG 300
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATTAAGTCAGGGAGATTGTATGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTT 477
Query 301 CTCACAATCTGGGGGATACTTCAACTTTTAAGAATGTATCCTGGTCAAGTCCCTGATCTT 360
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 478 CTCACAATCTGGGGGATACTTCAGCTTCTAAGAATGTATCCTGGTCAAGTCCCTGATCTT 537
Query 361 GAGCTTCTCTTCTTCTGTCATGATATACCAGCTATTTGGAAACGAGACTTTAGGCAACCG 420
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 538 GAGCTTCTCTTCTTCTGTCATGATAAACCCGCTATTTGGAAACGAGACTTTAGGCAACCA 597
Query 421 GAACCAAATGCCACGTGGCCTCCTCCGCCGTTGTTTCAGTACTGTGGTCACCGTGAAGCC 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 CAACCAAATGCCACGTGGCCTCCTCCACCGTTGTTTCAGTACTGTGGTCACCGTGAAGCC 657
Query 481 TACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTG 518
||||||||||||||||||||||||||||||||||||||
Sbjct 658 TACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTG 695
> Ahg483723 jgi|Araly1|483723|fgenesh2_kg.4__2783__AT2G45840.1
Length=1657
Score = 507 bits (274), Expect = 1e-142
Identities = 940/1249 (75%), Gaps = 96/1249 (8%)
Strand=Plus/Plus
Query 127 ACTTGTCCTGACTACTTCAGATGGATCCAACAA-GACCTAAAAGTATGG-GAAGAGACAG 184
|||||||| ||||||||||| ||||||| |||| || || ||| |||| | | ||| |
Sbjct 374 ACTTGTCCAGACTACTTCAGGTGGATCC-ACAAGGATTTAGAAGCATGGCG-TGGGACTG 431
Query 185 GGATCACAAGGGAAACACTAGAGAGAGCAAAACCA-AAGGCTCATTTCAGGCTAG-TGAT 242
| ||||| | || || |||||||||| | | || ||||| |||||||| | | ||
Sbjct 432 GAATCACTCGAGAGACGTTAGAGAGAGC-GAGTGATAAAGCTCACTTCAGGCT-GATAAT 489
Query 243 -AAAGTCAGGGAGATTGTACGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTGC 301
|||| ||| ||| |||| || || || ||| | || ||| | || ||||||||||
Sbjct 490 AAAAG-GAGGAAGAGTGTATGTGCAACAATACAAGAAATCTTTTCAGACAAGAGATGTTT 548
Query 302 TCACAATCTGGGGGATACTTCAACTTTTAAGAATGTATCCTGGTCAAGTCCCTGATCTTG 361
|||| || ||||| ||| | || ||| |||| ||||||||||||||||||||||||||||
Sbjct 549 TCACTATATGGGGAATAGTACAGCTTCTAAGGATGTATCCTGGTCAAGTCCCTGATCTTG 608
Query 362 AGCTTCTCTTCTTCTGTCATGA-TATACCAGCTATTTGGA-AACGAGACTTTAGG-C-A- 416
||||||||||| | || ||||| | |||| | || |||| || |||||| |||| | |
Sbjct 609 AGCTTCTCTTCATGTGCCATGACT-TACCTGAAATCTGGAGAA-GAGACTATAGGCCAAG 666
Query 417 ACC-GGAACCAAATGCCACGTGGCCTCCTCCGCCGTTGTTTCAGTACTGTGGTCA--CCG 473
||| ||| | |||| |||||||| ||||| || | || || || ||||| || |||
Sbjct 667 ACCAGGAGTC-AATGTGACGTGGCCACCTCCTCCACTCTTCCACTATTGTGGCCATTCCG 725
Query 474 TGAAGCCTACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTGGCCGGAGGTGAATAT 533
| || | || ||| || ||||| || |||||||| ||||||||||||||| | || ||
Sbjct 726 -G-TGCTTTCGACATTGTCTTCCCCGACTGGAGCTTTTGGGGCTGGCCGGAGATTAACAT 783
Query 534 AAAGGAGTGG-ACAAAATTATCT-GTGGCGATTAGAGAA--GCCAACAAAAGGGTTAAAT 589
|||||||||| | |||| | | | | |||||| || ||| | || | || ||| || |
Sbjct 784 AAAGGAGTGGAATAAAA-TGT-TGGAGGCGATAAGTGAAGGGTTAA-AGAA-GGTGAAGT 839
Query 590 -GGAACGATAGAGTTCCATATGCTTACTGGAAAGGGAACT-CTGGGGTTCATCGCGAA-A 646
|||| || |||| || || || || ||||||||||| | |||| | | | || || |
Sbjct 840 GGGAA-GAGAGAGAACCTTACGCATATTGGAAAGGGAA-TCCTGGAG-T--TGGC-AAGA 893
Query 647 GAGGAAACCTTATGAAATGTAACTTCTCCGATAAGTATGATCCCATGGTTCGTCTCTATG 706
|| || ||| | ||| || | | | | |||| |||||||||| |||||||
Sbjct 894 GAAGAGACC---T--CATG-AA--T-T--G-T---CATGACCCCATGGTTCATCTCTAT- 937
Query 707 AG-CAGGATTGGGGGAAGGAGAGGG-A-GATAGGGTTTAAAAGTTCAAACCTAGAAGACC 763
|| ||||||||| |||| |||||| | ||| |||| || | ||||||||||||||| |
Sbjct 938 AGCCAGGATTGGTGGAA--AGAGGGCAGGATTGGGTATAGGACTTCAAACCTAGAAGATC 995
Query 764 AATGCACCCATAGGTACAAGATCTACATAGAAGGTCGAGCATGGTCGGTGAGCAAAAAAT 823
|||||||||| ||||||||||| || ||||||| | || ||||| || ||| | || |
Sbjct 996 AATGCACCCACAGGTACAAGATTTATGTAGAAGGAAGGGCTTGGTCAGTCAGCGAGAAGT 1055
Query 824 ACATACTAGCATGCGACAGTATGACTCTAC-TGATCAAAGCCGA--GTACTTCGATTTCT 880
| ||| |||| || |||||||||||||| | || | |||||| | ||||| || ||||
Sbjct 1056 ATATATTAGCTTGTGACAGTATGACTCTTCTTG-T-AAAGCC-ATTTTACTTTGACTTCT 1112
Query 881 TCGGAAGAAGTTTGGTTCCGTTAGAACATTACTGGCCCATTAAATCTC-ACGAGAAATGT 939
|| ||||| || ||||| | || |||||||||||||||| | ||| | || ||||||
Sbjct 1113 TCACTAGAAGCTTAGTTCCAATGGAGCATTACTGGCCCATTAGACCTCGA-GAAAAATGT 1171
Query 940 GGTGATC-TCAAGTTCGCCGTGGAATGGGGTAACAACAACACTAAGAA-GGCGC-AAGTT 996
|||| | | || || || | ||||| ||||||||||| || || ||| | ||| |
Sbjct 1172 AGTGA-CATTGTCTTTGCTGTCCATTGGGGGAACAACAACACCAA-AAGGGC-CAAAGCT 1228
Query 997 ATAGGGAGACAGGGAAGTGATTACATTATG-AAGAACCTAGAGATGAAGTATGTGTATGA 1055
||| ||||| | ||||||| || | || | ||||| ||| |||||||||||||||||||
Sbjct 1229 ATATGGAGAAATGGAAGTGGGTATA-TACGAAAGAATCTAAAGATGAAGTATGTGTATGA 1287
Query 1056 TTACATGTTGTATGTGTTGCAAGGGTACGGGAAACTAATGAAGTTGGATGT-GACTGTGC 1114
|||||||||| || | |||||| | || ||||| | |||| | || |||| || || |
Sbjct 1288 TTACATGTTGCATCTATTGCAAAGCTATGGGAAGTTGATGACGATGAATGTAGAA-GTAC 1346
Query 1115 CTGAAA-ATGC-AACCGAAGTGTGTTCGGAGACGATGGCTTGTCCGATCACTGACGGTGG 1172
|| || | || || ||||||||| ||||||| || |||||||| |||| || | ||
Sbjct 1347 CTCAAGGA-GCCAAG-GAAGTGTGTCCGGAGACAATTGCTTGTCCAATCAATG--GA-GG 1401
Query 1173 CCTGA-TCAGGCAGTGC-ATGGACGACTCATTGGTTATGTCTCCAAGCGTTAAATCGGCT 1230
|| || | || || | | ||||| ||||||||||||||||| || |||||||| | |||
Sbjct 1402 CC-GAATGAGACACT-CTATGGATGACTCATTGGTTATGTCACCGAGCGTTAAGGCTGCT 1459
Query 1231 TGTGATTTGCCGCGGCCTTATAGA-GATGATGAGCTGAAGAGGTTTCTTGAGAA-ACAAG 1288
||||| |||| | ||| | || || |||||||| ||||||||||||||||| | |||
Sbjct 1460 TGTGAGATGCCTCCAACTTTT-GAAGAAGATGAGCTCAAGAGGTTTCTTGAGAAGA-AAG 1517
Query 1289 AAAGTGCGGAGAGA-AAGGTTGAGAAGTGGACCAATGAGTATTGGGAGG 1336
||||| |||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 1518 AAAGTATTGAGAAAGAAG-TTGAGAAGTGGACTAATGAGTATTGGGAGG 1565
> Ahg899091 jgi|Araly1|899091|Al_scaffold_0005_3057
Length=339
Score = 246 bits (133), Expect = 3e-64
Identities = 199/231 (86%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 1012 AGTGATTACATTATGAAGAACCTAGAGATGAAGTATGTGTATGATTACATGTTGTATGTG 1071
||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 37 AGTGAGTACATGATGAAGAACTTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTG 96
Query 1072 TTGCAAGGGTACGGGAAACTAATGAAGTTGGATGTGACTGTGCCTGAAAATG-CAACCGA 1130
|| ||||| || |||||| | ||||||||||||||||| ||||| ||||||| || | ||
Sbjct 97 TTACAAGGCTATGGGAAATTGATGAAGTTGGATGTGACAGTGCCGGAAAATGACA-CGGA 155
Query 1131 AGTGTGTTCGGAGACGATGGCTTGTCCGATCACTGACGGTGGCCTGATCAGGCAGTGCAT 1190
|| ||||| |||||||||||||||| || ||||| ||||| | |||||||||||||||
Sbjct 156 GGTTTGTTCAAAGACGATGGCTTGTCCTATTACTGATGGTGGACGGATCAGGCAGTGCAT 215
Query 1191 GGACGACTCATTGGTTATGTCTCCAAGCGTTAAATCGGCTTGTGATTTGCC 1241
|| |||| ||||||||||| || ||||| || ||||||||||||||||
Sbjct 216 TGAT-ACTCGTTGGTTATGTCACCGAGCGTCAAGGCGGCTTGTGATTTGCC 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5