BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61300.1
Length=3050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486605 jgi|Araly1|486605|fgenesh2_kg.5__2597__AT3G61300.1 4759 0.0
> Ahg486605 jgi|Araly1|486605|fgenesh2_kg.5__2597__AT3G61300.1
Length=3038
Score = 4759 bits (2577), Expect = 0.0
Identities = 2894/3048 (95%), Gaps = 17/3048 (1%)
Strand=Plus/Plus
Query 9 AGACAAGTCTCCACGATCTCATAAGTGTAGAAGAAACTTTCAAAAACCTCTGCTCTGTTT 68
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2 AGACAAGTCTCCACGATCTCATAAGTGCCGAAGAAACTTTCAAAAACCTCTGCTCTGTTT 61
Query 69 TCTTCAGAAATTTTTTAAGTAAAAATGATGAGTAATCTGAAACTTGGCGTTGAAGTCATA 128
|| || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TC--CACAGA------AAGTAAAAATGATGAGTAATCTGAAACTTGGCGTTGAAGTCATA 113
Query 129 AGCGCAAGGCTCAAACCTAGAGAGGACTATGGCGGTGTTAACGCTTACGTCGAGCTACGA 188
|||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 114 AGCGCAAGACTCAAACCTAGAGAGGACTATGGCCGTGTTAACGCTTTCGTCGAGCTACGA 173
Query 189 TTTGACGATCAGAAAGTCATAACTATGACTAAGATCGATGACTCTAGTCCGGTGTGGAAC 248
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 174 TTTGAGGATCAGAAAGTCATAACTACGACTAAGATCGATGACTCAAGTCCGGTGTGGAAC 233
Query 249 GAGAAGTTCTTCTTCAACATCTCTGATACAGAGGATTTATCAAATCAATTTCTTGACGCT 308
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 234 GAGAAGTTCTTCTTCAACATCTCTGATACAGAGGATTTATCAAATCAGTTTCTTGAGGCT 293
Query 309 TACGTTTACAATAAAACCAGCAGCATAACAAAATCTTGTCTAGGTAAGATTCGAATATTG 368
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 294 TACGTTTACAATAAAACCAGCAGCATAACGAAATCATGTCTAGGTAAGATTCGAATTTTG 353
Query 369 GGAACTGCGTTTCTCCCGTACTCAGAAGCTGTTGGATTGCCTTATCCTCTAGAGAAAGAG 428
|||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 354 GGAACTGCGTTTCTGCCGTATTCAGAAGCTGTTGGATTGCCTTACCCTCTTGAGAAAGAG 413
Query 429 AAATGGAGCATGTTCTCTTCCGCTGCCGCCAATGGAGGTGAGCTCGCTCTCAAAGTTTTC 488
|||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||
Sbjct 414 AAATGGAGTATGTTCTCTTCCGCTGCCGCCATTGGAGGCGAGCTCGCTCTAAAAGTGTTC 473
Query 489 CTCACTGATAACCCCTCTCCCAAGGTACCGAATCTAATCTC-TACAAAGAAGATTCCTTC 547
|||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||
Sbjct 474 CTCACTGATAACCCCTATCCCAAGGTACCGAATCTAA-CCCTTACAAAGAAGATTCCTTC 532
Query 548 TAAATCAAGGCACAAATTTCACAACATCCCCACAAATGAG---AGTAACCATAGCCCACG 604
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 533 TAAATCAAGGCACAAATTTCACAACATCCCCACAAATGAGAAAAGTAAACATAGCCCACA 592
Query 605 AGGGAATCAGCAATCGTTTCAACCGCAACCGC-CTCCGCCTCAATCGCAAACGGCTCTAC 663
||||||||||||| ||| |||||| ||||||| | ||| |||| ||||| || ||| ||
Sbjct 593 AGGGAATCAGCAACCGTCTCAACCTCAACCGCAAT-CGCTTCAACCGCAACCGCCTCAAC 651
Query 664 CGCCACCGATGATGGAGTCTTCTCTCTATCAAGCACCGAGGTTTGGTACTCCGATACCTA 723
|||||||||| ||||| |||||||| | |||||||||||||||| || ||||||||||||
Sbjct 652 CGCCACCGATTATGGACTCTTCTCTGTTTCAAGCACCGAGGTTTAGTTCTCCGATACCTA 711
Query 724 CAACTATGGGGTTTAATCCGAATCCACCGGATTATTCTATCAAAGAGACGAAACCGATTC 783
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 712 CAACTATGGGATTTAATCCGAATCCACCGGATTATTCTGTCAAAGAGACGAATCCGATTC 771
Query 784 TCGGAGGAGGCAAACGAGCAAGATCAAGTGATCATGATCTCGTCGAGCCAATGGAGTTTC 843
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 772 TCGGAGGAGGCAAACGAGCAAGATCGAGTGATCATGATCTCGTCGAGCCAATGGAGTTTC 831
Query 844 TCTTCATCAAAATCGTGAAAGCTAGAAATCTTCCATCCATGGACTTAACCGGAAGTCTAG 903
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 832 TCTTCATCAAAATCGTGAAAGCTAGAAATCTTCCATCCATGGACATAACCGGAAGTCTAG 891
Query 904 ATCCATACATCGAAGTCAAACTCGGAAACTATACCGGCAAAACCAAACATTTTGAGAAGA 963
|||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 892 ATCCGTACATCGAAGTCAAACTCGGAAACTTTACCGGCAAAACAAAACATTTCGAGAAGA 951
Query 964 ATCAAAACCCGGTTTGGAACGAAGTCTTCGCTTTCTCCAAATCCAATCAACAATCAAACG 1023
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATCAAAACCCGATTTGGAACGAAGTCTTCGCTTTCTCCAAATCCAATCAACAATCAAACG 1011
Query 1024 TTCTTGAAGTCATCGTCATGGACAAAGACATGGTCAAAGACGATTTCGTCGGTTTAATCC 1083
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1012 TTCTTGAAGTTATCGTGATGGACAAAGACATGGTCAAAGATGATTTCGTCGGTTTAATCC 1071
Query 1084 GGTTCGATCTCAATCAGATTCCGACACGTGTCGCACCAGACAGTCCTTTAGCTCCAGAAT 1143
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AGTTTGATCTCAATGAGATTCCGACACGTGTCGCACCAGACAGTCCTTTAGCTCCAGAAT 1131
Query 1144 GGTACAGAGTCAACAACGAGAAAGGAGGCGAGATTATGTTGGCTGTTTGGTTCGGTACTC 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGTACAGAGTCAACAACGAGAAAGGAGGCGAGATTATGTTGGCTGTTTGGTTCGGTACTC 1191
Query 1204 AAGCCGACGAAGCGTTCTCAGACGCGACATACTCAGACGCTTTAAACGCTGTTAACAAAT 1263
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1192 AAGCCGACGAAGCGTTCTCAGACGCGACATACTCAGACGCGTTAAACGCTGTTAACAAAT 1251
Query 1264 CGAGTTTGCGTTCTAAAGTCTATCATTCTCCAAGGCTTTGGTACCTCCGGGTTAATGTCA 1323
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1252 CGAGTTTGCGTTCCAAAGTCTATCATTCTCCTAGGCTTTGGTACCTCCGGGTTAATGTCA 1311
Query 1324 TCGAGGCACAAGACTTAGTTATTGTACCAGACCGGACTCGATTGCCAAATCCATATGTAA 1383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1312 TCGAGGCACAAGACTTAGTTATTGTACCAGACCGGACTCGATTGCCAAATCCATATGTTA 1371
Query 1384 AAATCCGGTTGAATAACCAAGTGGTTCGAACCAAACCGAGTCACTCGCTGAATCCAAGAT 1443
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1372 AAATCCGGTTGAATAACCAATTGGTTCGAACCAAACCGAGTCAGTCGCTGAATCCAAGAT 1431
Query 1444 GGAACGAAGAGTTCACTCTCGTCGCGGCTGAACCGTTTGAAGATCTGATCATCTCGATTG 1503
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1432 GGAACGAAGAGTTCACGCTCGTCGCGGCTGAACCGTTTGAGGATCTGATAATCTCGATTG 1491
Query 1504 AAGACCGAGTCGCACCTAACCGAGAGGAAACGCTGGGAGAGGTACATATACCGATTGGTA 1563
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAGACCGAGTCGCGGCTAACCGAGAGGAAACGCTGGGAGAGGTACATATACCGATTGGTA 1551
Query 1564 CAATTGATAAACGGATTGACGATAACCGGACAGTGCCTAACCGTTGGTTTAGTCTTAAAA 1623
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1552 CAATTGATAAACGAATTGACGATAACCGGACAGTACCTAACCGTTGGTTTAGTCTTAAAA 1611
Query 1624 CTGAGAACCAGAGAAGAGTCAGATTCGCGACGACGAGACTTCATCTAAACGTTTGTCTAG 1683
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1612 CTGAGAACCAGAGAAGAGTCAGATTCGCGGCGACGAGGCTTCATCTAAACGTTTGTCTAG 1671
Query 1684 AAGGAGGCTACCACGTTCTTGATGAATCTACTTACTACAGCAGCGATTTCAGACCGTCGA 1743
||||||| || |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 1672 AAGGAGGTTATCACGTTCTTGATGAATCTACCTATTATAGCAGCGATTTAAGACCGTCGA 1731
Query 1744 TGAAAGAGTTGTTGAGTCATAAACAACCGTCTTTTGGTGTTCTTGAATTAGGAATCTTGA 1803
|||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct 1732 TGAAAGAGTTGTTGAGTCATAAGCAGCCGTCTATTGGTGTTCTTGAATTAGGAATCTTGA 1791
Query 1804 GAATTGAAGGTTTGAATTTGAGCCAAGAAGGGAAGAAGGAGACGGTGGATGCTTATTGTG 1863
|||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1792 GAATGGAAGGTTTGAGTTTGAGCCAAGAAGGTAAGAAAGAGACGGTGGATGCTTACTGTG 1851
Query 1864 TAGCTAAGTATGGAACCAAATGGGTCAGGACTCGAACCGTTACGAACTGTTTAAACCCGC 1923
| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 1852 TGGCTAAGTATGGAACCAAATGGGTCAGGACTCGGACCGTTACGGAGTGTTTAAACCCGC 1911
Query 1924 GGTTCAATGAGCAGTACACATGGGAGGTTTATGAGCCAGCAACTGTAATAACAATCGGTG 1983
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1912 GGTTCAACGAGCAGTACACATGGGAGGTTTATGAGCCAGCAACCGTAATCACAATTGGTG 1971
Query 1984 TTTTCGATAACAATCAGATCAATAGTGGTAATGGTAACAAAGGAGATGGGAAAATTGGGA 2043
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1972 TTTTCGATAACAATCAGATCAATGGTGGTAACGGTAACAAAGGAGATGGGAAAATTGGGA 2031
Query 2044 AAATCAGAGTTAGAATCTCGACTCTCGAAGCCGGAAGGATCTACAGTCACTCGTATCCGC 2103
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2032 AAATCAGAGTTAGAATCTCGACTCTCGAAGCCGGAAGGATCTACACTAACTCGTATCCGC 2091
Query 2104 TTCTTGTTCTTCGACCTTCAGGTTTAAAGAAAATGGGGGAGTTGCATTTAGCGATTAGGT 2163
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 2092 TTCTTGTTCTTCGACCTTCAGGTTTAAAGAAAATGGGGGAATTGCATTTGGCGATTCGGT 2151
Query 2164 TTTCCTGCTCATCGATGTTTCAGATGCTAATGCAGTACTGGAAACCGCTTCTTCCCAAGA 2223
|||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 2152 TTTCTTGCTCGTCGATGTTTCAGATGCTAATGCAGTACTGGAAACCTCTTCTTCCCAAAA 2211
Query 2224 TGCATTACGCAAGACCGTTGAAAGTAGTGCAGCAGGAGATTCTTAGGCAGCATGCGGTTA 2283
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2212 TGCATTACGCGAGACCGTTGAAAGTCGTGCATCAGGAGATTCTTAGGCAGCATGCGGTTA 2271
Query 2284 ACTTAGTGGCAGCTCGGTTAAGTAGAGCCGAGCCGCCACTTAGAAAAGAAGTAGTTGAAT 2343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 ACTTAGTGGCAGCTCGGTTAAGTAGAGCCGAGCCGCCACTTAGAAAAGAAGTAGTTGAAT 2331
Query 2344 ACATTTCGGATTCAAATTCGCATTTATGGAGCATGAGGAAGAGCCGTGCAAATCTCTTCA 2403
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2332 ACATTTCGGATTCAAATTCGCATTTATGGAGCATGAGGAAGAGCCGTGCGAATCTCTTCA 2391
Query 2404 GATTGAGTTCTGTTTTCTCTGGTTTACTAGGAACCGGAGAATGGTTTCAAGATATCTGCA 2463
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2392 GATTAAGTTCAGTTTTCTCTGGTTTACTCGGAACCGGAGAATGGTTTCAAGACATCTGCA 2451
Query 2464 GGTGGAAGAAACCGGTAGAAACTACAGCTATTCATATAATCTTC-TTGGTGTTAGTGTGT 2522
|||||||||||||||||| || ||||||||||||| |||||| | ||| |||||||||||
Sbjct 2452 GGTGGAAGAAACCGGTAGCAAGTACAGCTATTCATGTAATCTACCTTG-TGTTAGTGTGT 2510
Query 2523 TCGCCGGAGATGATTCTTCCAGTGATGTCTCTTTGCTTGTTCATGCTTGGGGTATGGAAC 2582
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2511 TCGCCGGAGATGATTCTTCCGGTGATGTCGCTTTGCTTGTTCATGCTTGGGGTATGGAAC 2570
Query 2583 TACAGGCTCCGTCCAAGACAACCTCCACACATGGACACAAGACTATCATTTGCAGACAAT 2642
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2571 TATAGGCTCCGTCCAAGACAACCTCCACACATGGACACAAGACTTTCATTTGCAGACAAT 2630
Query 2643 ATCCACCCGGAAGAGCTTAACGAAGAGTTCGATACCTTCCCTTTTTCGTCTCAAGACCCG 2702
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2631 ATCCACCCGGAAGAGCTTAACGAAGAGTTTGATACCTTCCCTTTTTCGTCTCAAGACCCG 2690
Query 2703 GGGATTGTAAAAATGCGGTACGAGCGGTTAAGGAGTATCGCTAGTAGAGCTCAAACGGTT 2762
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 2691 GGGATTGTAAAAATGCGGTACGAGCGGTTGAGGAGTATCGCAAGTAGAGCTCAAACTGTT 2750
Query 2763 GTGGGAGATATAGCAGGTCAAGGAGAACGAGTTCAGGCTCTGTTAAGCTGGAGAGATCCA 2822
||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 2751 GTGGGAGATATAGCAGGTCAAGGAGAAAGAGTTCAGGCTTTATTAAGCTGGAGAGATCCA 2810
Query 2823 AGAGCAACTTCGATCTTCATGGTGCTTTGTTTGGTTTCTACTGTCGTTTTGTATGTTGTG 2882
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2811 AGAGCAACTTCAATCTTCATGGTGCTTTGTTTGGTTTCTACTGTCATTTTGTATGTTGTG 2870
Query 2883 CCGTTTAAGGTTTTTGTTCTTCTCGCCGGACTATACATCATGAGACCTCCAAGATTCAGG 2942
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2871 CCGTTTAAGGTTTTTGTTCTTCTAGCCGGACTATACATCATGAGACATCCAAGATTCAGG 2930
Query 2943 GGTAAGACACCTCCTGGACCTATTAATTTCTTCCGACGACTTCCTGCTAAAACAGATTGT 3002
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2931 GGAAAGACACCTCCTGGACTTATTAATTTCTTCCGACGACTTCCTGCTAAAACAGATTGT 2990
Query 3003 ATGCTGTAGAATGCTAAAACGTATAAGAAACAAGCAAttttttttCCC 3050
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2991 ATGCTGTAGAATGCTAAAACGTATAAGAAACAAGCAAATTTTTTTCCC 3038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115184900880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5