BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61310.1
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324562 jgi|Araly1|324562|fgenesh1_pm.C_scaffold_5002106 1618 0.0
Ahg483725 jgi|Araly1|483725|fgenesh2_kg.4__2785__AT2G45850.1 99.0 1e-19
> Ahg324562 jgi|Araly1|324562|fgenesh1_pm.C_scaffold_5002106
Length=1041
Score = 1618 bits (876), Expect = 0.0
Identities = 1009/1068 (94%), Gaps = 30/1068 (3%)
Strand=Plus/Plus
Query 390 ATGGATCGAAGAGACGCAATGGCGTTATCCGGGTCGGGTTCTTACTATATCCAAAGAGGA 449
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCGAAGAGAAGCAATGGCGTTATCCGGGTCGGGTTCTTACTATATCCAAAGAGGA 60
Query 450 ATCCCCGGTTCTGG---TCCTCCTCCTCCTCAAACTCAACCAACGTTTCACGGATCACAA 506
|| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ATACCCGGTTCAGGTCCTCCTCCTCCTCCTCAAACTCAACCTACGTTTCACGGATCACAA 120
Query 507 GGATTTCATCATTTCACCAATTCCATCTCTCCTTTTGGGTCAAACCCAAACCCAAATCCA 566
||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 121 GGATTTCATCATTTCACCAATTCCAACTCTCCTTTTGGG-----------------T-CA 162
Query 567 AACCCTGGAGGTGTCTCTACTGGATTCGTGTCTCCTCCTTTACCCGTTGACTCTTCTCCG 626
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 163 AACCCTGGAGGTGGCTCTACTGGATTCGTGCCTCCTCCTTTACCCGTTGAGTCTTCTCCG 222
Query 627 GCTGATTCGTCAGCGGCGGCGGCGGGAGCTTTGGTTGCTCCTCCTTCAGGTGACACGTCT 686
|||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 223 GCTGATTCTTCA---GCGGCGGCGGGAGCTGTGGTTGCTCCTCCTTCAGGTGACACGTCT 279
Query 687 GTGAAGCGGAAGAGAGGACGGCCTAGAAAATATGGACAAGATGGTGGTTCTGTTTCGTTG 746
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 280 CTGAAGCGGAAGAGAGGACGGCCTAGAAAATATGGACAAGA---TGGTTCTGTTTCGTTG 336
Query 747 GCATTGTCTCCTTCTATCTCCAACGTTTCCCCGAACTCTAACAAACGTGGCCGTGGAAGA 806
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 337 GCATTGTCTCCTTCTATCTCCAACGTTTCCCCAAACTCTAACAAACGTGGCCGTGGAAGA 396
Query 807 CCTCCTGGCTCCGGCAAGAAGCAACGGCTATCTTCCATTGGTGAAATGATGCCTTCATCA 866
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 397 CCTCCTGGCTCCGGCAAGAAGCAACGGCTATCTTCCATTGGTGAAATGATGCATTCATCG 456
Query 867 ACTGGGATGAGCTTCACACCGCATGTAATCGTAGTTTCCATTGGTGAAGACATTGCTTCA 926
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 457 TCTGGAATGAGCTTCACACCGCACGTAATCGTAGTTTCCATTGGTGAAGACATTGCGTCA 516
Query 927 AAGGTTATATCGTTCTCGCATCAAGGTCCACGAGCGATATGTGTCTTATCCGCAAGTGGT 986
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 517 AAGGTTATATCCTTTTCGCATCAAGGTCCACGAGCGATATGTGTTTTATCCGCAAGTGGC 576
Query 987 GCTGTCTCTACTGCAACTCTTCTTCAGCCAGCACCTTCTCATGGAACTATTATATACGAG 1046
||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 577 GCTGTCTCTACTGCAACTCTTCTTCAGCCAGCACCATCACATGGAACTATTACATACGAG 636
Query 1047 GGTCTATTCGAGCTCATATCTCTCTCAACTTCTTATCTGAACACAACTGACAATGACTAC 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GGTCTATTCGAGCTCATATCTCTCTCAACTTCTTATCTGAACACAACTGACAATGACTAC 696
Query 1107 CCAAACCGCACTGGAAGTCTAGCGGTCTCACTTGCTAGCCCCGATGGTCGTGTCATTGGT 1166
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 697 CCAAACCGCACTGGAAGTCTAGCGGTCTCACTTGCTAGCTCCGATGGTCGTGTCATTGGT 756
Query 1167 GGTGGAATTGGAGGTCCTCTAATAGCAGCAAGCCAAGTCCAGGTCATTGTTGGCAGCTTC 1226
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 757 GGTGGAATTGGAGGTCCTCTAATAGCAGCAAGCCAAGTCCAGGTCATCGTTGGGAGCTTC 816
Query 1227 ATTTGGGCAATTCCGAAAGGGAAGATTAAAAAACGTGAAGAAACTTCTGAAGATGTCCAA 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 ATTTGGGCAATTCCGAAAGGGAAGATTAAAAAACGTGAAGAAACTTCTGAAGATGTCCAA 876
Query 1287 GATACTGATGCTTTGGAAAACAACAACGATAACACAGCAGCAACGTCACCTCCTGTTCCT 1346
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GATACTGATGCTTTGGA---CAACAACGATAACACAGCAGCAACGTCACCTCCTGTTCCT 933
Query 1347 CAGCAAAGTCAGAACATTGTTCAGACTCCTGTAGGCATTTGGTCAACTGGTTCAAGGTCA 1406
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CAGCAAAGTCAGAACCTTGTTCAGACTCCTGTAGGCATTTGGTCAACTGGTTCAAGGTCA 993
Query 1407 ATGGATATGCATCACCCCCATATGGACATTGATCTAATGCGTGGATGA 1454
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 ATGGATATGCATCACCCCCATATGGACATTGATCTAATGCGTGGATGA 1041
> Ahg483725 jgi|Araly1|483725|fgenesh2_kg.4__2785__AT2G45850.1
Length=1712
Score = 99.0 bits (53), Expect = 1e-19
Identities = 72/81 (89%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 390 ATGGATCGAAGAGACGCAATGGCG-TTATCCGGGTCGGGTTCTTACTATATCCAAAGAGG 448
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 381 ATGGATCGAAGAGATGCAATGG-GATTATCCGGGTCGGGTTCTTACTATATCCATAGAGG 439
Query 449 AATCCCCGGTTCTGGTCCTCC 469
| | |||| || ||||||||
Sbjct 440 ATTATCCGGGTCGGGTCCTCC 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62125189595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5