BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61320.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939173 jgi|Araly1|939173|scaffold_503364.1 2054 0.0
> Ahg939173 jgi|Araly1|939173|scaffold_503364.1
Length=1277
Score = 2054 bits (1112), Expect = 0.0
Identities = 1224/1279 (96%), Gaps = 4/1279 (0%)
Strand=Plus/Plus
Query 71 TAAAACCCCTTATTTTCCCGCCAATGTATCAATCCATGAATCTATCAGTTTCTTCCAATT 130
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1 TAAAACCCCTAATTTTCCCGCCAATGTATCAGTCCATGAATCTATCCGTTTCTTCCAATT 60
Query 131 TCACTCACCGATCACTCCTCGAATCACGATTTCCTATATTCTCCACCGGATTCCGCAAAT 190
|| |||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 61 TCGCTCACCGATCTCTCCTCGAGTCACGATTCCCTATATTCTCCACCGGATTCCGTAAAC 120
Query 191 CCGTCAATCTCAAACCTCCCCGTGTCTCATCTGGTCCTGAATCCAACGATTCAGGTCACG 250
|||||||||||||||||||||| || ||||| |||||||||||| |||||| |||||||
Sbjct 121 CCGTCAATCTCAAACCTCCCCGCGTGTCATCCGGTCCTGAATCCGGCGATTCCGGTCACG 180
Query 251 AAACCTTAACCGATAAGCTTATCCA-T-CTCCTCAGAGCTGTTCCAGATTGGGCAGACGA 308
||||| ||||||| |||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 181 AAACCCTAACCGAGAAGCTTAT--ATTGCTCCTCAGAGCTGTTCCAGATTGGGCAGACGA 238
Query 309 GATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTTGA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTCGA 298
Query 369 ACATAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTAT 428
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACACAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTAT 358
Query 429 ACTCTCCCTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCTAGCTA 488
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 359 ACTCTCTTTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCCAGTTA 418
Query 489 CAACTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATTTTTCCAATTCTTCGATCCTCGTC 548
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 419 CAATTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATCTTCCCAATTCTTCGATCTTCGTC 478
Query 549 GTTGCCGTATCAGCTCACAGCTCCGGCTTTGGCTCTTCTTCTGGTCTTTCGTACGGAGGC 608
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 GTTGCCGTATCAGCTCACGGCTCCGGCTTTGGCTCTTCTTCTGGTGTTTCGTACGGAGGC 538
Query 609 TTCGTATTCTAGGTATGAAGAAGGAAGGAAAGCTTGGGTTGGGATTATTGCTGGAACTAA 668
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 TTCTTATTCTAGGTATGAGGAAGGAAGGAAAGCTTGGGTTGGGATAATTGCTGGAACTAA 598
Query 669 TGATTTAGCTAGGCAAGTTATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATCATCAA 728
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 TGATTTAGCTAGGCAAGTGATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATTATCAA 658
Query 729 AGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTTGCTCTTAAGTGTCATGTGATTTA 788
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 659 AGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTGGCTCTTAAGTGTCATGTGATTTA 718
Query 789 TGGTTCAGATATAGCAAGAGATCTCCGGAACTTGATAGAAGCAGATGACTTATCTCTGAT 848
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 TGGTTCAGATATCGCAAGAGATCTCCGGAATTTGATAGAAGCAGATGACTTATCTCTGAT 778
Query 849 TCTTCAAGCAAAGCATCGTCCGCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTT 908
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTCAAGCAAAGCATCGTCCCCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTT 838
Query 909 GCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGCTGCATTTACATGA 968
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 GCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGTTGCATTTACATGA 898
Query 969 AGGAATTGGAGTTTGTGAACAACTCATGGGCATTCCGATTCCTCTCTCTTACACACGCTT 1028
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 AGGCATTGGAGTTTGTGAACAACTAATGGGCATTCCGATTCCTCTCTCTTACACACGCTT 958
Query 1029 AACCTCGAGGTTTTTAGTCTTTTGGCATCTAACTCTCCCAATCATTCTCTGGGATGAATG 1088
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 AACCTCGAGGTTTTTAGTCTTTTGGCATTTAACTCTCCCAATCATTCTCTGGGATGAATG 1018
Query 1089 CCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCCTCTCTGTTCTGCATAGAAGA 1148
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1019 CCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCATCCCTGTTCTGCATAGAAGA 1078
Query 1149 AGTGGGTGTTCTTATAGAAGAACCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCT 1208
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGTGGGTGTTCTTATAGAAGAGCCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCT 1138
Query 1209 TGTGCATAGTAACATCCAAGAAGCTGTTAAATCTGAGAAAGTCATACGTAACCGCATCAT 1268
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1139 TGTGCATAGTAACATCCAAGAAGCTGCTAAATCTGAGAAAGTCATACGTAACCGCATCAT 1198
Query 1269 TGCAAAGATAAAGCTCCATGAATTCAAGCACTCATCAAATGGTCGCCATAGATCTTGATT 1328
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 TGCAAAGATAAAGCTCCGCGAATTCAAGCACTCATCAAATGGTCGGCATAGATCTTGATT 1258
Query 1329 ACCGGTTGGTGTGAGTGAT 1347
|| |||||||||||||||
Sbjct 1259 TCCCGTTGGTGTGAGTGAT 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5