BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61340.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939174 jgi|Araly1|939174|scaffold_503365.1 1812 0.0
> Ahg939174 jgi|Araly1|939174|scaffold_503365.1
Length=2186
Score = 1812 bits (981), Expect = 0.0
Identities = 1160/1244 (93%), Gaps = 21/1244 (2%)
Strand=Plus/Plus
Query 17 AGAGAAGCCGCCTCCACCATGATGACACGGCGCAAGAAACGATCTTGTTCGAATCAAAAG 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AGAGAAGCCGCCTCCACCATGATGACACGGCGCAAGAAACGATCTTGTTCGAATCCAAAG 60
Query 77 AAAGAAGAAG-A--GAAATCCGAACGGATCCCGTTCGATCTCGTAATCGAGATACTCTTG 133
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAAGAAGTAGTGAAATCCGAACCGATCCCGTTCGATCTCGTAATCGAGATACTCTTG 120
Query 134 AGATTGCCTGTC-AAGTCTATAGCTAGATTTCGTTACGTATCGAAGCTATGGCAGTCCAC 192
|||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 121 AGATTGCCTG-CGAAGTCTATAGCAAGATTTCGTTACGTGTCGAAGCTATGGCAGTCCAC 179
Query 193 ATTGCGAGGT-CAGCATTTCACCGAGTCCTACTTGACCATATCTTCGTCTCGTCCGAAGA 251
|||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 180 ATTGCGAGGTCCA-CATTTCACCGAGTCCTTCTTGACCTTATCTTCGTCTCGTCCGAAGA 238
Query 252 TCTTGTTTACATGCCTAAAAGACTGCGAAACGTTCTTCTTCTCATCACCACATCCTCAAG 311
| ||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 239 TATTGTTCACTTGCCTAAAAGACGGTGAAACGTTCTTCTTCTCATCACCACATCCTCAAG 298
Query 312 ATCTGTCTCCTATAGCCGCAAAT-TTGCATATGAGTTTCCCGA-TTAGCTGTCCCTCTAA 369
|||||||||||||| |||| ||| || |||||||||||||| | ||| ||||||||||||
Sbjct 299 ATCTGTCTCCTATATCCGCCAATATT-CATATGAGTTTCCC-AGTTAACTGTCCCTCTAA 356
Query 370 TATTTGTCGTCCTGTTCGTGGCTGGTTATGTGGTTTACATCAACGAACTACAAAGGGAAC 429
||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 357 TATTTGTCGTCCTGTTCATGGCTGGGTATGTGGTTCACATCAACGAACTACAAAGGGAAC 416
Query 430 GACGGTTACTGAGCCATTGATATGTAACCCTAGCACAGGGGAATCCGTGGTCTTACGTAA 489
||||||||| | ||||||||||||||||| |||||||||||||| ||| |||| | ||
Sbjct 417 GACGGTTACGGTTCCATTGATATGTAACCCCAGCACAGGGGAATCTTTGGCCTTATGCAA 476
Query 490 AGTGAAAACAAGGAGGAAAGGAGTGATAAGCTTTTTGGGGTTTGATCCGATCGACAAAAA 549
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGTGAAAACAAGGAGGAAGGGAGTGATAAGCTTTTTGGGGTTTGATCCGATCGACAAAAA 536
Query 550 TTTCAAAGTATTATGCATGACGCGTTCATGTATAGGACGAGCTGATTCTGAAGAGCATCA 609
||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 537 GTTCAAAGTATTGTGCATGACGCGGGCATATGTAGGACGAGCTGATTCTGAAGAGCATCA 596
Query 610 AGTTCACACGTTAGAAACCGGGAAGAAACCGTCAAGGAAAATGATCGAATGTGACATACT 669
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGTTCTCACGTTAGAAACCGGGAAGAAACCGTCAAGGAAAATGATCGAATGTGACATACT 656
Query 670 ACATTATCCTGTTCCTGTGGAGCATACTAATGGCTTTTCTCAATATGATGGGGTATGCAT 729
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACATTATCCTACTGTTGTGGAGCATACTAATGGCTTTTCTCAATATGATGGGGTATGCAT 716
Query 730 CAATGGTGTTTTGTATTACTTAGCCATTGTCCATGGTGTTTCTGACGACAGGTATCCTGA 789
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 CAATGGTGTTTTGTATTACTTAGCCATTGTCCATGGTGTTTCTGACCACAGGTATCCTGA 776
Query 790 TGTAGTATGCTTTGAGTTTGGATCTGACAAATTCAAATATATCAAGAAAGTTGCTGGTCA 849
||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||
Sbjct 777 TGTAGTATGCTTTGAGTTTAGATCTGATAAATTCAATTATATCAAGAAAGTTGCTGATCA 836
Query 850 TGACATGGAAATATTGTACTTGGGAAGG-CGGCT-GAATTCAATTCTAGTAAACTACAAG 907
|| ||||||||| ||||||| || || | ||| || ||||| ||| ||||||||||||
Sbjct 837 TGGCATGGAAAT---GTACTTGAGA-GGACAGCTTGA-TTCAACTCTGGTAAACTACAAG 891
Query 908 GGTAAATTAGCTAAGCTTCAGCCCAACATGCCTAACAACG---TATGCACCGGTATTCAA 964
|||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 892 GGTAAATTAGCTAAGCTTCAGCCCAACATGTCTAACAATGGAGTATGCACCGGTATTCAA 951
Query 965 CTATGGGTTCTTGAAGACGCGGAGAAACACGAATGGTCAAGTCATATCTACGTTTTGCCT 1024
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 952 CTATGGGTTCTTGAAGACGCCGAGAAACACGAATGGTCGAGTCATATCTACGTTTTGCCT 1011
Query 1025 CCTCCGTGGAGGAATGTATATGAAGAGACCAAGTTATGTTTCGTTGGAACGACTCGTAAA 1084
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1012 CCTCCGTGGAGGAATGTATATGAAGAGACCAAGTTATGTTTTGTTGGAACGACTCGTAAA 1071
Query 1085 GGTGAAATTGTGTTGTCCCCAAACACTATATCCGACTTTTTCTACCTTCTCTATTACAAT 1144
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1072 GGTGAAATTGTGTTGTCCCCAAACACTATATCCAACTTTTTCTACCTTCTCTACTACAAT 1131
Query 1145 CCCGATAGGAACACTATCACTATAGTTAAAATCAAAGGAATGGAAACTTTTCAGAGTCAC 1204
||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1132 CCCGAGAGGAACACTATCACTATAGTTAAAATCAAAGGATTGGAAACCTTTAAGAGTCAT 1191
Query 1205 AAAGCTTACACCTTTCTTGACCATTTAGAGGATGTTAACCTTGT 1248
||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1192 AAAGCTTACACCTTTGTTGACCATTTAGAGGATGTGAAGCTTGT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5