BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61350.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314194 jgi|Araly1|314194|fgenesh1_pm.C_scaffold_1002974 1177 0.0
> Ahg314194 jgi|Araly1|314194|fgenesh1_pm.C_scaffold_1002974
Length=1023
Score = 1177 bits (637), Expect = 0.0
Identities = 724/764 (95%), Gaps = 13/764 (2%)
Strand=Plus/Plus
Query 413 ATCCAT--ATATCCCAATGAGAGAAGGCATGGGTTTTGCAGTATTGGGTAAGAGACTGTT 470
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 270 ATCCATGAATATCCCAATGAGAGAAGGCATGGGTTTTGCAGCATTGGGTAAGAGACTTTT 329
Query 471 TGTGTTGGGTGGATGTGGTTGGTTAGAAGATGCTACTGATGAGATTTATTGCTATGATGC 530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 330 TGTGTTGGGTGGATGTGGTTGGTTAGAAGATGCTACTGATGAGGTTTATTGCTATGATGC 389
Query 531 TGCTATGAACACTTGGTTTGACGTAGTACCTCCTCTTTCAACTAAAAGATGCTACTTTGC 590
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 390 TGCTATAAACACTTGGTTTGACGTAGTAACTCCTCTTTCAACTAAAAGATGCTACTTTGC 449
Query 591 TTGTGAAACGCTGGATGGAAAAATTATTGCAATTGGTGGGTTAGGATTGAATCCAAACGC 650
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 450 TTGTGAAACGTTGGATGGAAAAATTATGGCAATTGGTGGGCTAGGATTGAATCCAAACGC 509
Query 651 TAAACGAACTTGGGACATCTATGATCCTTTGACCAGAACCTGCAAATCTTGTTCTGATGT 710
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 510 TAAACGAAGTTGGGACATCTATGATCCTTTGACCAGAACCTGCAAATCTTGTTC-----T 564
Query 711 GAATATTGTCCCTGAAATGGAAGATTCATTTGTAATGGATGGAAGGATTTATATTCGGGG 770
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 565 G---A-TGTCCCTGAAATAGAAGATTCATTTGTAATGGACGGAAGGATTTATATTCGGGG 620
Query 771 TGGTGTTGGAGGATCTTCCACTGCAGTCTATAGTGCATCTAGCGGGATTTGGGAACGTAT 830
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGGTGTTGGTGGATCTTCCAGTGCAGTCTATAGTGCATCTAGCGGGATTTGGGAACGTAT 680
Query 831 GGATGATGATATGGCATCAGGATGGCGAGGTCCAGCAGTTGTTGTGGCAGGTGATCTCTA 890
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 681 GGATGATGATATGGCATCAGGATGGCGAGGTCCAGCAGTTGTTGTGGCAGATGAGCTCTA 740
Query 891 TGTTTTGGATCAGACTTTTGGAGCTAAGCTAACAATGTGGTGCAAGGATACGAGAATGTG 950
|||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 741 TGTTTTGGATCAAACTTTTGGAGCTACGCTAACAATGTGGTGCAAGGAAACAAGAATGTG 800
Query 951 GATTCATATCGGGAAGCTATCTCAATTGGTGATGAAGCAGCCTTGTCGGCTTGTATCTAT 1010
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 801 GATTCGTATCGGGAAGCTATCTCAATTGGTGATGAAGCAGCTTTGTCGGCTTGTTTCTAT 860
Query 1011 TGGGAATAGTATCTTTGTGATTGGTAAGGATTGCTCTACTGTGGTAATTGATGTTGAGAA 1070
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 861 TGGAAATAGTATCTTTGTGATTGGTAAGGATTGCTCTACTGTGGTGATTGATGTTGAGAA 920
Query 1071 TGTGAGGAAGAATA-AGATGAATGGAGTAATGGTGTGTTCTTCTATACCAAAGACTTGGG 1129
||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 921 TGTGAGGAAGACGACA-ATGAACGGAGTAATGGTGTGTTCTTCTATACCAAAGACTTGGG 979
Query 1130 ATGATGATATAGATGTTATTAGCTGTAAATCTGTAGCCATATAA 1173
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 ATGATGATATAGATGTTATTAGCTGTAAATCTGTAGCCATATAA 1023
Score = 379 bits (205), Expect = 2e-104
Identities = 237/253 (94%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 97 ATGGCGTGTATAGTAGAGGATCCACAACGTGCAGGTCAATCAAATGAGACACAAATTGCA 156
|||||||||||||||||||| || ||||||||| | ||||||| ||||||||||||||
Sbjct 1 ATGGCGTGTATAGTAGAGGAGACAGAACGTGCAGATGAATCAAACGAGACACAAATTGCG 60
Query 157 CTTATAAGCGGAGTTCCTGATGATATCTCAAAATCCTGCTTAGCTAGAGTTCCAAGAGAA 216
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTTATAAGCGGAGTTCCTGATGATATCTCAAAATCCTGCTTGGCTAGAGTTCCAAGAGAA 120
Query 217 TATCACATGGCAATGAAATGTGTTTCAAGGAGATGGAGAGATTTTGTGTGCAGTGATGAA 276
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 121 TATCACATGGCAATGAAATGTGTTTCAAGGAGATGGAGAGATTTCGTGTGCGGTGATGAA 180
Query 277 ATGTGCGACTATCGAAACGAGTTTAACTTGGCTGAATCTTGGATTTACGCGTTGTGCCGC 336
| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTTTGCGATTATCGAAACAAGTTTAACTTGGCTGAATCTTGGATTTATGCGTTGTGCCGC 240
Query 337 GACATATCTGGCG 349
|| ||||||||||
Sbjct 241 GATATATCTGGCG 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5