BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61360.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939176 jgi|Araly1|939176|scaffold_503367.1 2346 0.0
Ahg913737 jgi|Araly1|913737|Al_scaffold_0001_3991 739 0.0
Ahg314194 jgi|Araly1|314194|fgenesh1_pm.C_scaffold_1002974 132 1e-29
> Ahg939176 jgi|Araly1|939176|scaffold_503367.1
Length=1537
Score = 2346 bits (1270), Expect = 0.0
Identities = 1446/1530 (95%), Gaps = 15/1530 (1%)
Strand=Plus/Plus
Query 4 GAGAGAAAAATGCTTCAGAAGATCTCCTCCGATTCGTATCGTCGTCTTCTTGCTCCAGTA 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 12 GAGAGAAAAATGCTTAAGAAGATCTCCTCCGATTCGTATCGTCGTCTTCTTGCTCCGGTA 71
Query 64 CTATCATCATCTTCATCTTTATCATCTACATCGATAAACAGAACAGAGATCGAACGTATT 123
|| || || ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 72 CTCTCTTCGTCTTCATCTTTATCATCTACATCGAGAAACAGAACAGAGATCGAACTTATC 131
Query 124 ACAATAATCATCAATGGTCATCCATTCCCAAATCATCCGATTCAACCCATTCTCGCCAAA 183
|||| |||||||||| ||||||||||||||||||||| |||||||| ||| || ||||
Sbjct 132 ACAAGGATCATCAATGATCATCCATTCCCAAATCATCCAATTCAACCAATTTTCACCAAG 191
Query 184 CACATCCCTTTATCTTCTCTGTCACCGGAATTTGTATCAGAAGTTCTCGGTC-GTCTCTT 242
||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 192 CACATCCCTTTGTCTTCTCTATCACCGGAATTTGTATCAGAAGTTCTCGG-CAGTCTCTT 250
Query 243 CGCTGCTCATTCCAATGGCCTTAAAGCTCTCGAATTCTTCAAGTATTCACTTAAAAGCTC 302
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 251 CGCTGCTCATTCCAATGGCCTCAAAGCTCTCGAATTCTTCAAGTATTCCCTTAAAAGCTC 310
Query 303 TAAATCTTCTCCCACCTCTGATTCCTTCGAGAAAACACTTCACATTCTCGCACGGATGCG 362
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TAACTCTTCTCCAACCTCTGATTCCTTCGAGAAAACACTTCACATTCTCGCACGGATGCG 370
Query 363 TTATTTCGATCAAGCTTGGGCTTTAATGGCGGAAGTGCGAAAAGACTACCCTAATTTGTT 422
|||||||||||||||||||||||||||||||||| | ||||||| || ||| |||||||
Sbjct 371 TTATTTCGATCAAGCTTGGGCTTTAATGGCGGAAATAAGAAAAGATTATCCTGATTTGTT 430
Query 423 GAGTTTCAAGTCCATGAGCATAC-TTCTCTGCAAAATCGCTAAATTTGGGTCTTATGAAG 481
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 431 GAGTTTCAAGTCTATGAGCAT-CATTCTCTGCAAAATCGCTAAATTTGGGTCTTATGAAG 489
Query 482 AAACTCTAGAAGCTTTCGTGAAGATGGAGAAAGAGATATTCAGAAAGAAATTTGGTGTCG 541
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AAACTTTAGAAGCGTTCGTGAAGATGGAGAAAGAGATATTCAGAAAGAAATTTGGTGTCG 549
Query 542 ATGAGTTCAATATTCTTCTACGAGCGTTTTGCACAGAGCGAGAGATGAAGGAAGCGAGAT 601
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 550 ATGAGTTCAATATTCTTCTGCGAGCATTTTGCACAGAGCGAGAGATGAAGGAAGCGAGAT 609
Query 602 CAATTTTCGAAAAATTGCATTCTC-GGTTTAACCCAGATGTGAAGACGATGAACATTTTA 660
|||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||||||
Sbjct 610 CAATTTTCGAAAAATTGCATTC-CAGGTTTAAGCCAGATGTCAAGACGATGAACATTTTA 668
Query 661 CT-TCTAGGGTTTAAGGAAGCTGGTGATGTTACGGCCACGGAGCTGTTTTATCATGAAAT 719
|| | ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 669 CTGT-TAGGGTTTAAGGAAGCTGGTGATATTACGGCCACGGAGTTGTTCTATCATGAAAT 727
Query 720 GGTGAAACGAGGATTTAAACCAAATTCCGTCACTTACGGTATCAGAATTGATGGGTTCTG 779
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 728 GGTGAAACGAGGATTCAAACCTAATTCCGTAACTTACGGTATCAGAATCGATGGGTTCTG 787
Query 780 CAAAAAACGAAACTTTGGGGAAGCTTTGAGGCTCTTTGAAGATATGGATCGTCTAGAT-T 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 788 CAAAAAACGAAACTTTGGGGAAGCTTTGAGGCTCTTTGAAGATATGGATCGTCAAGATAT 847
Query 839 TTGATATCACGGTACAGATACTCACTACATTGATCCATGGGTCTGGTGTAGCTAGGAACA 898
|| ||||||| ||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 848 TT-ATATCACAGTACAGATACTCACTACATTGATTCATGGGTCTGGTGTTGTTCGGAACA 906
Query 899 AGATCAAAGCACGCCAACTGTTCGATGAAATTTCCAAGAGAGGTTTAACACCTGATTGCG 958
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 907 AGATCAAAGCACGCCAACTGTTCGATGAAATTCCCAAGAGAGGTTTAACACCTGATTGCG 966
Query 959 GAGCTTATAATGCTTTGATGAGTAGTCTAATGAAGTGTGGAGATGTGAGTGGTGCAATTA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 967 GAGCTTATAATGCTTTGATGAGTAGTCTAATGAAGTGTGGAGATGTGAGTGGTGCAATCA 1026
Query 1019 AGGTGATGAAGGAGATGGAAGAGAAAGGAATTGAGCCTGACAGTGTAACTTTCCACTCGA 1078
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1027 AGGTGATGAAAGAGATGGAAGAGAAAGAAATTGAGCCTGACAGTGTAACTTTCCACTCGA 1086
Query 1079 TGTTTATCGGAATGATGAAATCAAAAGAGTTTGGATTCAATGGGGTATGTGAGTATTACC 1138
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1087 TGTTTATCGGAATGATGAAATCGAAAGAGTTTGGATTCAGCGGGGTATGTGAGTATTACC 1146
Query 1139 AGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACTATAGTGATGCTGATGAAGC 1198
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1147 AGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACGGTAGTGATGCTGATGAAGC 1206
Query 1199 TGTTCTGTCACAACGGTGAAGTAAATTTAGGATTAGACCTGTGGAAGTATATGTTGGAGA 1258
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1207 TGTTCTGTCAGAACGGTGAAGTCAATTTAGGATTAGACCTTTGGAAGTATATGTTGGAGA 1266
Query 1259 AAGGGTATTGCCCTCATGGCCACGCATTGGAACTCCTTACCACTGCTTTGTGTGCTCGAA 1318
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1267 AAGGATATTGCCCTCATGGCCACGCATTGGAACTCCTCACCACTGCATTGTGTGCTCGAA 1326
Query 1319 GAAGAGCCAATGATGCATTTGAGTGCTC-ATGGCAAACAGTAGAGAGAGGAAGGTGTGTG 1377
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 1327 GAAGAGCCAATGATGCATTTGAGTGCTCGA-GGCAAACAGTGGAGAGAGGAAGGTGTGTG 1385
Query 1378 AGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACGAGTTGAAGAAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACGAGTTGAAGAAA 1445
Query 1438 CTAGAAGAACTCAAGGAGGA-GATACAAAAACTGCATAGCTTTTTGCCTCCTCCTGAAAT 1496
|||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||| ||
Sbjct 1446 CTAGAAGAACTCAAGG-GGAAGATACAAAAACTTCATAGCTTTTTGCCACCTCCTGGAAC 1504
Query 1497 ACAGCTAATGTAGAA-GTAGCTTCACTGTA 1525
||||||||| ||||| ||||||||||||||
Sbjct 1505 ACAGCTAATTTAGAAAGTAGCTTCACTGTA 1534
> Ahg913737 jgi|Araly1|913737|Al_scaffold_0001_3991
Length=624
Score = 739 bits (400), Expect = 0.0
Identities = 470/504 (93%), Gaps = 4/504 (1%)
Strand=Plus/Plus
Query 1008 TGGTGCAATTAAGGTGATGAAGGAGATGGAAGAGAAAGGAATTGAGCCTGACAGTGTAAC 1067
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 123 TGGTGCAATCAAGGTGATGAAGGAGATGGAAGAGAATGGAATTGAGCCTGACAGTGTAAC 182
Query 1068 TTTCCACTCGATGTTTATCGGAATGATGAAATCAAAAGAGTTTGGATTCAATGGGGTATG 1127
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 183 TTTCCACTCGATGTTTATCGGAATGATGAAATCGAAAGAGTTTGGATTCAACGGGGTATG 242
Query 1128 TGAGTATTACCAGAAAATGAAGGAAAGATCTCTGGTTCCGAAAACACCAACTATAGTGAT 1187
|||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 243 TGAGTATTACCACAAAATGAAGGAAAGATGTCTGGTTCCAAAAACACCAACGGTAGTGAT 302
Query 1188 GCTGATGAAGCTGTTCTGTCACAACGGTGAAGTAAATTTAGGATTAGACCTGTGGAAGTA 1247
||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct 303 GCTGATGAAGCTGTTCTGTCAGAACGGTGAAGTCAACTTGGGATTAGACCTTTGGAAGTA 362
Query 1248 TATGTTGGAGAAAGGGTATTGCCCTCATGGCCACGCATTGGAACTCCTTACCACTGCTTT 1307
||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 363 TATGTTGGAGAGAGGGTATTGCCCTCATGGCCAAGCATTGGAACTACTTACCACTGCACT 422
Query 1308 GTGTGCTCGAAGAAGAGCCAATGATGCATTTGAGTGCTC-ATGGCAAACAGTAGAGAGAG 1366
||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||
Sbjct 423 GTGTGCTCGAAGAAGAGGCAATGATGCATTTGAGTGCTCGA-GGCAAACAGTGGAGAGAG 481
Query 1367 GAAGGTGTGTGAGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGCAACAACG 1426
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 482 GAAGGTGCGTTAGCGAACCAGTCTATCGGATGTTAGAGACCTCATTATCAAGTAACAACG 541
Query 1427 AGTTGAAGAAACTAGAAGAACTCAAGGAGGA-GATACAAAAACTGCATAGCTTTTTGCCT 1485
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 542 AGTTGAAGAAACTAGAAGAACTCAAGG-GAAAGATACAAAAACTTCATAGCTTTTTGCCA 600
Query 1486 CCTCCTGAAATACAGCTAATGTAG 1509
||||||| || ||||||||| |||
Sbjct 601 CCTCCTGGAACACAGCTAATCTAG 624
Score = 159 bits (86), Expect = 5e-38
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 821 ATATGGATCGTCTAGATTTTGATATCACGGTACAGATACTCACTACATTGATCCATGGGT 880
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 ATATGGATCGTCGAGATTTTGATATCACGGTACAGATACTCACTACATTGATCCATGGGT 85
Query 881 CTGGTGTAGCTAGGAACAAGATCAAAGCACGCCAA 915
||||||||||| |||||||||||||| ||||||||
Sbjct 86 CTGGTGTAGCTCGGAACAAGATCAAAACACGCCAA 120
> Ahg314194 jgi|Araly1|314194|fgenesh1_pm.C_scaffold_1002974
Length=1023
Score = 132 bits (71), Expect = 1e-29
Identities = 71/71 (100%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 1765 TTATATGGCTACAGATTTACAGCTAATAACATCTATATCATCATCCCAAGTCTTTGGTAT 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTATATGGCTACAGATTTACAGCTAATAACATCTATATCATCATCCCAAGTCTTTGGTAT 964
Query 1825 AGAAGAACACA 1835
|||||||||||
Sbjct 963 AGAAGAACACA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5