BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61370.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486610 jgi|Araly1|486610|fgenesh2_kg.5__2602__AT3G61370.1 763 0.0
Ahg473886 jgi|Araly1|473886|fgenesh2_kg.1__3840__AT3G61370.1 749 0.0
Ahg939179 jgi|Araly1|939179|scaffold_503370.1 283 9e-76
> Ahg486610 jgi|Araly1|486610|fgenesh2_kg.5__2602__AT3G61370.1
Length=521
Score = 763 bits (413), Expect = 0.0
Identities = 475/504 (94%), Gaps = 7/504 (1%)
Strand=Plus/Plus
Query 93 GTGGTGATACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAGA 152
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGTGGTACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAGA 60
Query 153 TTTTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGGC 212
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGGC 120
Query 213 CCACAGAGGATGATCCTATTGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTTG 272
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CTACAGAGGATGATCCTATCGAGACTGCACAAGAAGAACGACCACACAGACTTGGACTTG 180
Query 273 GTGCTCAAGTGTCACGACAAACAAAGCGTAGACCTTCAGACGACCCTCTCGATCAGAAAC 332
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GTGCTAAAGTGTCACGACAAACAAAGCGTAGACCCTCAGACGACCCTCTCGATCAGAAAC 240
Query 333 TAGAAGCCAAGTTTGCTGCAGTGAAAAGAAAAAATGCAAGATTGGTTGCAGAAGCTGCTG 392
||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||
Sbjct 241 TAGAAGCCAAGTTTGCTGCAGGGAAAAGAAAAAATGCAAGATCGGTTGCAGAATCCGCTG 300
Query 393 GTTCTAGTAAGAATGCCGGTGATGACAGTGAGGATGATGATGAATCAGAAAGCAAAAGCC 452
||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 301 GTTCTAGTAAGAACGTTGGTGATGACAGTGAGGGTGATGATGAATCAGAAAGCAAAAGTC 360
Query 453 AAGCATTTGGTAAGAAAAAGAAAAATACAAGTACTCCTCATTAGAGTT-TGTGATGTACT 511
||||||| || ||||||||||||||||||||||| |||||||||| || |||||||||||
Sbjct 361 AAGCATTCGGCAAGAAAAAGAAAAATACAAGTACGCCTCATTAGA-TTCTGTGATGTACT 419
Query 512 ATA--GTAAAAAGTCATGGCCTTGTATTTGTTTTGATTGTTGG-ATAAGAGCTAAAACGC 568
||| || || ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 420 ATATAGTTTAA-GTCATGGCCTTGTATTTGTTTTGATTGTTGGCA-AAGAGCTAAAACGC 477
Query 569 ATAATTGTAGTTCTATTGGAACAT 592
|||||||||||||||||||||||
Sbjct 478 TTAATTGTAGTTCTATTGGAACAT 501
> Ahg473886 jgi|Araly1|473886|fgenesh2_kg.1__3840__AT3G61370.1
Length=520
Score = 749 bits (405), Expect = 0.0
Identities = 472/504 (94%), Gaps = 5/504 (1%)
Strand=Plus/Plus
Query 92 GGTGGTGATACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAG 151
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GGTGGTGGTACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACTG 60
Query 152 ATTTTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGG 211
||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 ATTCTTAAAACAGATAAGACACAAAAACTTGCTGAGAAGTGGGTTGCCAATATGACGAGG 120
Query 212 CCCACAGAGGATGATCCTATTGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTT 271
| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGCAGATGATGATCCTATCGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTT 180
Query 272 GGTGCTCAAGTGTCACGACAAACAAAGCGTAGACCTTCAGACGACCCTCTCGATCAGAAA 331
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGTGCTAAAGTGTCACGACAAACAAAGCGTAGACCCTCAGACGACCCTCTCGATCAGAAA 240
Query 332 CTAGAAGCCAAGTTTGCTGCAGTGAAAAGAAAAAATGCAAGATTGGTTGCAGAAGCTGCT 391
|||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | |||
Sbjct 241 CTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAATAATGCAAGATCGGTTGCAGAATCCGCT 300
Query 392 GGTTCTAGTAAGAATGCCGGTGATGACAGTGAGGATGATGATGAATCAGAAAGCAAAAGC 451
|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGTTCTAGTAAGAACGCCAGTGATGATAGTGAGGATGATGATGAATCAGAAAGCAAAAGT 360
Query 452 CAAGCATTTGGTAAGAAAAAGAAAAATACAAGTACTCCTCATTAGAGTT-TGTGATGTAC 510
|||||||| || ||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 361 CAAGCATTCGGCAAGAAAAAGAAAAATACAAGTACGCCTCATTAGA-TTCTGTGATGTAC 419
Query 511 TATAGTAAAAAG-TCATGGCCTTGTATTTGTTTTGATTGTTGG-ATAAGAGCTAAAACGC 568
|||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 420 TATAGTAAAAAGGTAATGGCCTTGTATTTGTTTTGATTGTTGGCA-AAGAGCTAAAACGC 478
Query 569 ATAATTGTAGTTCTATTGGAACAT 592
|||||||||||| ||||||||||
Sbjct 479 TTAATTGTAGTTCGATTGGAACAT 502
> Ahg939179 jgi|Araly1|939179|scaffold_503370.1
Length=1504
Score = 283 bits (153), Expect = 9e-76
Identities = 191/210 (91%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 300 GTAGACCTTCAGACGACCCTCTCGATCAGAAACTAGAAGCCAAGTTTGCTGCAGTGAAAA 359
||||||| ||||| |||||||||||||||||| || |||||||| ||| ||||| || ||
Sbjct 1288 GTAGACCCTCAGATGACCCTCTCGATCAGAAAATACAAGCCAAGCTTGATGCAGGGAGAA 1347
Query 360 GAAAAAATGCAAGATTGGTTGCAGAAGCTGCTGGTTCTAGTAAGAATGCCGGTGATGACA 419
||||| ||||||||| |||||||||| | ||||||||||||| ||| |||||||||||||
Sbjct 1348 GAAAATATGCAAGATCGGTTGCAGAATCCGCTGGTTCTAGTATGAACGCCGGTGATGACA 1407
Query 420 GTGAGGATGATGATGAATCAGAAAGCAAAAGCCAAGCATTTGGTAAGAAAAAGAAAAATA 479
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1408 GTGAGGATGATGATGAATCAGAAAGCAAAAGCCAAGCATTCGGCAAGAAAAAGAAAAATA 1467
Query 480 CAAGTACTCCTCATTAGAGTTTGTGATGTA 509
||||||| |||||||||||| ||| |||||
Sbjct 1468 CAAGTACGCCTCATTAGAGTCTGTTATGTA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5