BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61390.2
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899102 jgi|Araly1|899102|Al_scaffold_0005_3068 813 0.0
> Ahg899102 jgi|Araly1|899102|Al_scaffold_0005_3068
Length=1266
Score = 813 bits (440), Expect = 0.0
Identities = 682/790 (86%), Gaps = 51/790 (6%)
Strand=Plus/Plus
Query 66 ATGACATTAAAGATTCCGATCCAAG-AGATGGTGAAAATGGTTGGCTCTTTAAGATCTCA 124
||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct 1 ATGACATTAAAGATTCCGATCCAAGAAG-TGGTGAAAATGGTTGGCTCTTTAAGA--T-A 56
Query 125 TGGCATCGATATCCCT-GAATCAATG-GAAAT-CA-A--C--AAAAAAGAGAAGATCTAT 176
| | ||| ||| | ||| | | | |||| | | | | | |||||||| |||
Sbjct 57 T--C-GCGA-ATCAATGGAAACTA-GCAAAATAAAGACGCTGATGGATGAGAAGATATAT 111
Query 177 GTAGCAGTGACAGAGAAAGATCTAGAAAGCAAGTCTAGTCTCGTTTGGGCGATACAGAAC 236
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 112 GTAGCAGTGACAGGGAAAGATCTAGAGAGCAAGTCTAGTCTTGTTTGGGCGATACAGAAC 171
Query 237 AGTGGAGGCAAAGAGTTTTGCATCGTCCATGTTCATCAACCTAT-C----C-C-G----G 285
|||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 172 AGTGGAGGCAAAGAGTTTTGCATCGTCCATGTTCATCAACCTATCCAGATCTCAGTCCAG 231
Query 286 GGGA-GATGTTTCACGAGCAGAAATTGCGTCTCTACAGAAAAGAGAAGGACAAAGCACAT 344
|||| |||||||||||||||||||||||| || || |||||||||||||| |||||||||
Sbjct 232 GGGACGATGTTTCACGAGCAGAAATTGCGGCTTTATAGAAAAGAGAAGGAGAAAGCACAT 291
Query 345 AAGAATTCGGAGAAGTACCTTCAAATATGCAGGCAAATGCAGGTCACTGCAGAGATCATA 404
||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 292 AAGAATTTGGATAAGTACCTTCATATATGCAGGCAAATGCAGGTCAATGCAGAGATCATT 351
Query 405 TATATTGAAACGGATTCGGTAGAGAAAGGTATCCTCCAATTGATATCTCAGCGCGGAGTC 464
| ||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 352 TCTATCGAAATGGATTCGGTAGAGGAAGGTATTCTCCAATTGATATCTCAGCGCGGAGTC 411
Query 465 ACCAAACTCGTTATGGGAGCAGCAGCTGATAGACACTATTCAATGAGAATGAGAGACTTA 524
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 412 ACTAAACTCGTCATGGGAGCAGCAGCTGATAGACACTATTCAATGAGAATGAAAGACTTA 471
Query 525 AAGTCCAAGAAAGCTATTTACATTCACAGAGAAGCGCCTGCCACTTGTCTTATATGGTTT 584
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 472 CAGTCCAAGAAAGCTATTTACATTCACAGAGAAGCGCCTGCTATTTGTCATATATGGTTT 531
Query 585 ACGTGCAACGGTTACCTAATTTGTTCAAGGGAAGCTAGAAG-AGCAAATAACTTGTATCT 643
|||||||| || ||||||||||||||||||||||||||||| | || ||||||| |||||
Sbjct 532 ACGTGCAAAGGATACCTAATTTGTTCAAGGGAAGCTAGAAGCA-CAGATAACTTTTATCT 590
Query 644 AGAATGTGCATCGTCAAATTCTTTGAGTCAATCCGACATAACTAGAGGAACTGAAAGTAT 703
||||| | |||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 591 AGAATATTCATCGTCAAATTCTTTGAGTCAATCCAAAATAACTAGAGAAACTGAAAGT-- 648
Query 704 AGTTA-AAGAT-GATGATCATCTGATCAAATTAGCTGTCACAGAAGCTGAGGCTTCGAAA 761
||| ||| | || | | || | | ||| | || | | ||||| |||| |||
Sbjct 649 -GTTCCAAGCTCGA-G-T-ATA-GTT-AAAG-A--TG--AT-G---CTGAGACTTCCAAA 693
Query 762 AGGAAAGCACGCTTTGAGGCATGTAAGCGCGAAGAAGCTGAAAAAACTGCAGTTGATGCA 821
||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 694 AGGAAAGCATGCTTTGAGGCATCTAAGCGTGAAGAAGCTGAAAAATCTGCAGTTGATGCA 753
Query 822 CTCAAAAAGG 831
||||||||||
Sbjct 754 CTCAAAAAGG 763
Score = 678 bits (367), Expect = 0.0
Identities = 450/490 (92%), Gaps = 5/490 (1%)
Strand=Plus/Plus
Query 873 AGGAAAGAAACAGAGAAGGCACTGAGGAAAA-GAAATGACGAACTTGAAAAGATGAGATC 931
||| |||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 761 AGG-AAGAGACAGAGAAGGCACTGAGGAAAACG-AATGAAGAACTTGAAAAGATGAGATC 818
Query 932 AGAATCCGAGACCCAAATAACCGAATCTTATACTGTGATTAGAAAGCTTCAAGAAAAGAA 991
|||| ||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 819 AGAAGCCGAGTCCCAAATAACAGAATCTTATACGGTGATAAGAAAGCTTCAAGAAAAGAA 878
Query 992 CAACTTATCAATGGAAACGTTTAGAGGAATCAGAGAAGAACAAGAAGAGTTGAAGATAAA 1051
||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||
Sbjct 879 CAACTTATCAATGGAAACGTTGAGAAGACTCAGAGAAGAACAAGAAGAGCTGAAGATAAA 938
Query 1052 GCTTAGAGAAGTATCAAAGCTGAAGGGTAAGCGCGAGGAAGAGGAAGCT-TCTACCTCTA 1110
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 939 GCTTAGAGAAGTATCAAAGCTGAAGGGTAAGCGCGAGGAAGAGGAAG-TGTCTCCCTCTA 997
Query 1111 ACCACCGTGAACCGCCACAATACTTTATTTGTCCCATTACACACGATATAATGGAGGATC 1170
|||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 998 ACCACCGTGAACCGCCTCAGTACTTCATTTGTCCCATTACACAGGATATAATGGAGGATC 1057
Query 1171 CACATGTAGCAGCTGATGGATTTACATATGAAGGAGAAGCCATAAGCCGTTGGTTTGAGA 1230
| ||||||||| | ||||| |||||||||||| ||||||| ||||| | ||||||| ||
Sbjct 1058 CTCATGTAGCAACAGATGGTTTTACATATGAAAGAGAAGCTATAAGTGGGTGGTTTGCGA 1117
Query 1231 GAGGACATGAGACTTCTCCAATGATAAACAAAAGGCTTCCTCACACGAGCTTGGTTCCAA 1290
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GAGGACACGATACTTCTCCAATGATAAACAAAAGGCTTCCTCACACGAGCTTGGTTCCAA 1177
Query 1291 ATCTTGCTCTTCGATCCGCAATTCAAGAATGGCTTCAACTTCGTGAATTATTGAACAGAC 1350
| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||| |
Sbjct 1178 ACCTTGCTCTTCGATCCGCAATTCAAGAATGGCTTCAAGTTCCAGAATCATTGAACAAAT 1237
Query 1351 CCTCTGCTTG 1360
||||||||||
Sbjct 1238 CCTCTGCTTG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5