BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61410.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486614 jgi|Araly1|486614|fgenesh2_kg.5__2606__AT3G61410.1 1724 0.0
> Ahg486614 jgi|Araly1|486614|fgenesh2_kg.5__2606__AT3G61410.1
Length=1142
Score = 1724 bits (933), Expect = 0.0
Identities = 1068/1132 (94%), Gaps = 13/1132 (1%)
Strand=Plus/Plus
Query 1 ACAAAACCAAAGCTTCTTGTCTGAAACGAACCAGCCATTCTAAAGATTTT-TACAAACAA 59
||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||
Sbjct 1 ACAAAACCAAAGCTTCTTGTCTGAAACGAACCAGCCATTCTCAAGATTTTCT-C-AACAA 58
Query 60 CTTTTT-CCCGAGAAAATCTCAAGTTTGAGGAAGCGAGAAAGAGCAACATGGAAGAAAAA 118
|||||| ||||||||| ||| | ||||||||||||| ||||||||||||||||||| ||
Sbjct 59 CTTTTTCCCCGAGAAACTCTGGACTTTGAGGAAGCGAAAAAGAGCAACATGGAAGAACAA 118
Query 119 GAAGAAGCAGGAGTGATGGATGAGAGAATATATGTTGCACTAGGGAGAGAAATAGCCAAT 178
||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 119 GAAGAAGCAGGAGTGATGGATGAGAGAATCTACGTTGCACTAGGGAGAGAAACAGCCAAA 178
Query 179 AACAAGTCAAATCTGGCATGGGTATTAGATAACTGTCAAGGGAACAAGATCTGTATCGTT 238
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 AACAAGTCAAATCTGGCTTGGGTATTAGATAACTGTGAAGGGAACAAGATCTGTATCGTT 238
Query 239 CTTGTTCACCGACCTCCTCAAATGATTCCTGTCTTGGGTACCAAGTTCGATGCTGCAACG 298
||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 239 CTTGTTCACCGACCTGCTCAAATGATTCCTATCTTGGGTACCAAATTTGATGCTGCAACG 298
Query 299 GTAGATGAAGAATTAGTGAGAGCATACAGAGAGAAACAAAAGGCGAAAACAGACAAGATT 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 GTAGATGAAGAATTAGTGAGAGCATACAGAGAAAAACAAAAGGCGAAAACAGACAAGATT 358
Query 359 CTTGATGAGTACCTTAGAATTTGCTTGCGGAAAGGGGTCCAAGCAGAGAAGCTGTGCGTT 418
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 359 CTTGATGAGTACCTCAGAATTTGCCTGCGGAAAGGGGTCCAAGCGGAGAAGCTGTGCGTT 418
Query 419 GAGATGAACTCGATCGAGAAAGGAATTGTGCAGATGATTTCTGAGAACAAAGTCAGGAAG 478
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 419 GTGATGAACTCGATCGAGAAAGGAATTGTGCAGATGATTTCTGAGAAAAAAGTGAGGAAA 478
Query 479 TTCATCATGGGAGCAGCTTCAGACAAACATTTTTCAACGAAAATGGAGGATTTGAGATCA 538
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 479 TTCATCATGGGAGCAGCTTCAGACAAACATTATTCAACGAAAATGGAGGAATTGAGATCA 538
Query 539 AAGAAAGCCATCTTCGTCTGCCAACAAGCTTCTGCT-ACTTGTCATATACGGTTTACCTG 597
|||||||||||||||||||||||||| || |||| | ||||||||||||||||||| |||
Sbjct 539 AAGAAAGCCATCTTCGTCTGCCAACATGCGTCTG-TGACTTGTCATATACGGTTTATCTG 597
Query 598 CAAAGGATATCTCATCCATACAAGGGAAGCTAGAATGGATGAAGTCCGAGCTCTCTCAGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAAAGGATATCTCATCCATACAAGGGAAGCTAGAATGGATGAAGTCCGAGCTCTCTCAGC 657
Query 658 TCTACTATCTGACTTTCAACGGCTTGTCACCTCACAAAGTAGCGCCAATTT-AGATCAAG 716
|||||||||||||||||| |||||| || |||||||||||||| ||| ||| ||||||||
Sbjct 658 TCTACTATCTGACTTTCAGCGGCTTTTCTCCTCACAAAGTAGCACCA-TTTCAGATCAAG 716
Query 717 ACAGTGGAGGTTCAAAGAGGAAAAGTGAGCATGAAGAGG-GGG--AGGAGGAGGAGAGAA 773
||||| ||||||||||||||||||| ||| | ||||||| ||| |||||||||||||||
Sbjct 717 ACAGTAGAGGTTCAAAGAGGAAAAGCGAGGAGGAAGAGGAGGGGGAGGAGGAGGAGAGAA 776
Query 774 CATCACGAACCAGCTCTTCTCGGTCTGCTAGTACATTGTCATACTTTGGAGGATCTGAGG 833
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 CATCACGAACCAGCTCTTCTCGGTCTGCTAGTACACTGTCATACTTTGGAGGATCTGAGG 836
Query 834 CTTCCTCAAGTGTAAGTGTAATGGAAGAGATATCAAACCGTTCATCTCCACCATCTTTAC 893
|||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 CTTCGTCAAGCGTTAGTGTAATGGAAGAGAAATCAAACCGTTCATCTCCACCATCTTTAC 896
Query 894 CGTGCAGCGGAATGGGACTGGGCATGATAACCTTCCTGATTAACTCCACCAAACTCTGGC 953
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGTGCAGCGGAATGGGGCTGGGCATGATAACCTTCCTGATTAACTCCACCAAACTCTGGC 956
Query 954 AAAGGCTTGCAATTCAAAACCATAAGCATTGTGAATGACCCCACCATTACCTGAAAAGCT 1013
|||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 AAAGGCTTGCCATCCAAAACCATAAGCATTGTGAATGACTCCACCATTACCTGAAAAGCT 1016
Query 1014 ACATAAAGAAGACGAGGACAAGAACATAAAGCTACAAAGATCTTGATCACATCTGTAAAT 1073
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 ACATAAAGAAGAAGAGGACAAGAACATAAAGCTACAAAGATCTTGATCACATCTGTATAT 1076
Query 1074 ACAATGTAGCTCATATTTGTAAA-CCCAATTGTGAGGAGAAGCTGCTTTGAG 1124
|||||||| |||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1077 ACAATGTATCTCATATTTGTAAAACCCAATTGT-ATGAGAAGCTGCTTTGAG 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5