BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61415.1 Length=1576 Score E Sequences producing significant alignments: (Bits) Value Ahg486615 jgi|Araly1|486615|fgenesh2_kg.5__2607__AT3G61415.1 2433 0.0 Ahg483735 jgi|Araly1|483735|fgenesh2_kg.4__2795__AT2G45950.1 1077 0.0 > Ahg486615 jgi|Araly1|486615|fgenesh2_kg.5__2607__AT3G61415.1 Length=1565 Score = 2433 bits (1317), Expect = 0.0 Identities = 1498/1582 (95%), Gaps = 25/1582 (2%) Strand=Plus/Plus Query 1 TtctttctctctcttatccgctcctgtctctctctctctctTGGTCTGTTTCTGCCGCCG 60 |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| Sbjct 1 TTCTTTCTCTCTCTTATCCGCT-C---CTCTCTCTCTCT-TTGGTCTGTTTCTGCCGCCG 55 Query 61 CCGTCGCCGTTATCCCCCGCCAGATTCAAATCTTTCTTCCACCATCGTCACTCATTGCTT 120 ||||||||||||||| |||||||||||||||||| | || || ||| |||||||||||| Sbjct 56 CCGTCGCCGTTATCCTCCGCCAGATTCAAATCTTCCCGCCGCCGTCGACACTCATTGCTT 115 Query 121 CTCC-TCCGGTCG-TAAGTATTTGGAAC-CTT-GAAGACTTAAAA-ATAACAACTTTTTA 175 |||| |||||||| || ||| || || ||| |||| |||| ||||| |||||||| Sbjct 116 CTCCATCCGGTCGTTAGGTA--TGTTACGCTTCCAAGA---AAAATATAACTACTTTTTA 170 Query 176 TAGTGGGCG-CTGTCCAATATATTGGAGAGCTTGACAGTGTAATAAGATA-TATACTCTA 233 ||||||| | |||||| || |||| | ||||||||||||||||||||||| ||| ||| | Sbjct 171 TAGTGGG-GACTGTCCTATTTATT-G-GAGCTTGACAGTGTAATAAGATATTAT-CTCAA 226 Query 234 CAAGCGTTATACCCGAAGACTGGGTCTATAAATCAATGTCAGAAGGTGAAATGGCCATCA 293 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 227 CGAGCGTTATACCCGAAGACTGGGTCTACAAATCAATGTCAGAAGGTGAAATGGCCATCA 286 Query 294 TTAAACCAGAGATGATGAAATCCTATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 353 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 287 TTAAACCAGAGATGATGAAATCATATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 346 Query 354 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 406 Query 414 GTGTTGGGTCTTCTAAGAACTACGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 473 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 407 GTGTTGGATCTTCTAAGAACTATGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 466 Query 474 TAAGCCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 533 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 TAAGTCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 526 Query 534 GTAAAGTTTATGATGAAAAATTCATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 593 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 527 GTAAAATTTATGATGAAAAATTCATTCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 586 Query 594 CAGCCGCTGACAGTTTGCAGTTGAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 653 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 587 CAGCCGCTGACAGTTTGCAGTTAAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 646 Query 654 GAATTATTGAGGGAAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 713 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 GAATTATTGAGGGGAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 706 Query 714 TTACTGAGGAGGAGAAATTAGAGCCTCTAAAGAACACAATGGATGATCCACGGATTCGAT 773 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 707 TTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACACAATGGATGATCCACGGATTCGAT 766 Query 774 TGTTGAATAGATTGTATGCaaagaaaagaaaagaattgaaagaaagagagaaactaaaga 833 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 767 TGTTGAATAGATTGTATGCAAAGAAAAGAAAGGAATTGAAAGAAAGAGAGAAACTAAAGA 826 Query 834 GTGTCGAGGTCGAAGAACATGTCGATGAGCGTTCAGTGGATGACCTGTTATCATTTATTA 893 || ||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 827 GTATCGAGGTTGAAGAACATGTCGATGAGCGGTCTGTGGATGACCTATTATCATTTATTA 886 Query 894 ATGGCAGAGATCCCAAGGTGGTAAAGACTTCCAAGAGCAAAAAGAAGAACAAGAAAAGGA 953 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 887 ATGGCAGAGATCCCAAGGTAGTAAAGACTTCTAAGAGCAAAAAGAAGAACAAGAAAAGGA 946 Query 954 AGGAACAGAAGAATGGTTCTTCAAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATA 1013 |||| || || |||||| |||||||||||||||||||||||| ||||||||||| |||| Sbjct 947 AGGAGCATAAAAATGGTACTTCAAATGGAACATGTGAAGCTTCGGAAAAGGATTCGCATA 1006 Query 1014 ATCTTGATTCCAAATCACAAAGTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAG 1073 ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 1007 ATCTTCATTCCAAATCACAAAGTGCTGAGATTATTGACAAGACTGCGTCCTGCTTGGGAG 1066 Query 1074 ATGTGTCTAACTTACCTAGTATGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAG 1133 |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1067 ATGTATCTAACTTACTTAGTATGGAAGATGACATTTTTACGCCAAAAACTGAGTTTGAAG 1126 Query 1134 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAG 1193 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1127 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAG 1186 Query 1194 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1187 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1246 Query 1254 CTGTGAACTTTTCCATAAATGGCAACGGAACTTCAAGACGATTGACAGGTCCAGCTGCAG 1313 ||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||||| Sbjct 1247 CTGTGCACTTTTCCATAAATGGCAACGGGACTACAAGGCGATTGACAGGTCCAGCTGCAG 1306 Query 1314 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1366 Query 1374 CTAGAATGTAAGCAATTAGAGAGAAAGTGGTGTTCCGGTCACCGGCGGTTGATGTGTGTC 1433 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1367 CTAGAATGTAAGCAATTAGAGAGA--GTGGTGTTCCGGTCACCGGCGTTTGATGTGTGTC 1424 Query 1434 ATCCTGTAAtttttcttt-ctttccacaatctgctttctctctttcttctCAGTTAATCC 1492 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 1425 CTCCTGTAATTTTTTTTTTCTTTCCACAATCTGCTTTCTCTCTTTCTTCTCAGTTAATTC 1484 Query 1493 GAGAGGTAGGATGCAGttttgttttctttttattttactcctttttagtgatcaaccttt 1552 ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| || Sbjct 1485 GAGAGGTAGGATGCAGTTTTGTTTTGTTTTT-TCTTACTCCTTTTTAGTGATCAACCCTT 1543 Query 1553 tgtatacaacttttaATTAAAG 1574 |||||||||||||||||||||| Sbjct 1544 TGTATACAACTTTTAATTAAAG 1565 > Ahg483735 jgi|Araly1|483735|fgenesh2_kg.4__2795__AT2G45950.1 Length=1632 Score = 1077 bits (583), Expect = 0.0 Identities = 922/1083 (85%), Gaps = 33/1083 (3%) Strand=Plus/Plus Query 258 TCTATAAATCAATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCCT 317 ||||| |||||||||||||||||| ||||| |||| |||||||||| ||||| |||| Sbjct 339 TCTAT-TATCAATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCT 397 Query 318 ATATATGGCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGT 377 | || |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 398 ACATCTGGCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGT 457 Query 378 TCTGTCCCATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGGTCTTCTAAGAACT-AC 436 |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | | Sbjct 458 TCTGTCCCATGATATGTCAAGAGGTAATACAAAAGGGTGTTGGATCTTCTAAGAA-TCAT 516 Query 437 GCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGTTAAGCCTGATTTTTGATTACTGC 496 |||||||| |||||||| ||||| |||||||| ||||| ||| ||||| ||||||| ||| Sbjct 517 GCAATATCGCTTCCACAACGAGTTAATCCAGCTATGTTCAGCTTGATTCTTGATTATTGC 576 Query 497 AGATTTCATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAGTTTATGATGAAAAATTC 556 |||||||||||| | ||||||||||||||||||||||| ||| ||||||||||| |||| Sbjct 577 AGATTTCATCAACTGCCTGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTC 636 Query 557 ATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAGTTG 616 ||| | ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| || Sbjct 637 ATCAGAATGGACACAAAAAGGCTCTGTGAGTTGACCTCAGCCGCTGATAGTTTGCAGCTG 696 Query 617 AAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGAAAAACCCCT 676 ||||| |||||||||||||||||| | || |||||| |||| ||||| |||||||||||| Sbjct 697 AAGCCTTTGGTTGATCTTACTAGTTGCGCACTTGCAAGAATCATTGAAGGAAAAACCCCT 756 Query 677 GAGGAGATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAG 736 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 757 GAGGAGATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAG 816 Query 737 CCTCTAAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCaaag 796 ||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||||| Sbjct 817 CCTCTGAAGAACACAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCAAAG 876 Query 797 aaaagaaaagaattgaaagaaagagagaaactaaagaGTGTCGAGGTCGAAGAACATGTC 856 |||||||| || ||||||||||||||| | | |||| ||| ||||| |||||||| || Sbjct 877 AAAAGAAAGGAGCTGAAAGAAAGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTG 936 Query 857 GATGAGCGTTCAGTGGATGACCTGTTATCATTTATTAATGGCAGAGATCCCAAGGTGGTA 916 || || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 937 GACGAACGTTCTGTGGATGACCTGTTATCATTTATTAATGGCAGAGATTCCAAGGTGGTA 996 Query 917 AAGACT-TCCAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAACAGAAGAATGGTTCTTC 975 |||| | || ||| | ||||||||||| ||||||| |||||| ||||||| || |||||| Sbjct 997 AAGA-TGTCAAAGGGAAAAAAGAAGAAGAAGAAAAAGAAGGATCAGAAGATTGTTTCTTC 1055 Query 976 AAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATAATCTTGATTCCAAATCA-CAAA 1034 ||||| | ||| | | | | | ||||| | |||| ||||| |||||||| || ||| Sbjct 1056 AAATG-A-CAT-TCA---T--G-ACAAGGAATCACATGATCTTCATTCCAAA-CAACAAT 1105 Query 1035 GTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAGATGTGTCTAACTTACCTAGTA 1094 ||| ||| | | ||| | | |||| || || |||| || | |||||||||||| Sbjct 1106 GTGTTGA-A--GA-GAC--TG--G-GTCCAGCATGAGAGAGGTACCCAACTTACCTAGTG 1156 Query 1095 TGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAGATGGTTATATAGATGATGAAA 1154 ||||||||||||| |||||||||| | | || |||||||| ||||||| ||||||| Sbjct 1157 CAGAAGATGACATTTCTACGCCAAAGGCCGGGTCTGAAGATGAAGATATAGACGATGAAA 1216 Query 1155 TTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGA 1214 | |||||||| ||| |||| ||||||||||||||||||| |||||||||| ||| ||| Sbjct 1217 TCGATCCAGCCATGAGGGAATTGCTTGATAGAGAGGTAGAAGATTTTGCTCAAAGACTGA 1276 Query 1215 ACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC-CTGTGA-ACTTTTCCATAAA 1272 |||| | |||||||| ||| ||||||||||||| || |||| | |||| |||||||| Sbjct 1277 ACTCCAATTGGGTTCGGTCGCTAGGACAAGAAAGA-AGGTCTGT-ACACTTCTCCATAAA 1334 Query 1273 TGGCAACGGAACTTCAAGACG--ATTGACAGGTCCAGCTGCAGGACACAAGTGAAGCTGA 1330 ||||||||| ||| ||||||| || ||||||| | || || ||||| | || |||||| Sbjct 1335 TGGCAACGGGACTACAAGACGGCAT--ACAGGTCAATCTCCATGACACGATTGGAGCTGA 1392 Query 1331 AAA 1333 ||| Sbjct 1393 AAA 1395 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59039879750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5