BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61415.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486615 jgi|Araly1|486615|fgenesh2_kg.5__2607__AT3G61415.1 2433 0.0
Ahg483735 jgi|Araly1|483735|fgenesh2_kg.4__2795__AT2G45950.1 1077 0.0
> Ahg486615 jgi|Araly1|486615|fgenesh2_kg.5__2607__AT3G61415.1
Length=1565
Score = 2433 bits (1317), Expect = 0.0
Identities = 1498/1582 (95%), Gaps = 25/1582 (2%)
Strand=Plus/Plus
Query 1 TtctttctctctcttatccgctcctgtctctctctctctctTGGTCTGTTTCTGCCGCCG 60
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1 TTCTTTCTCTCTCTTATCCGCT-C---CTCTCTCTCTCT-TTGGTCTGTTTCTGCCGCCG 55
Query 61 CCGTCGCCGTTATCCCCCGCCAGATTCAAATCTTTCTTCCACCATCGTCACTCATTGCTT 120
||||||||||||||| |||||||||||||||||| | || || ||| ||||||||||||
Sbjct 56 CCGTCGCCGTTATCCTCCGCCAGATTCAAATCTTCCCGCCGCCGTCGACACTCATTGCTT 115
Query 121 CTCC-TCCGGTCG-TAAGTATTTGGAAC-CTT-GAAGACTTAAAA-ATAACAACTTTTTA 175
|||| |||||||| || ||| || || ||| |||| |||| ||||| ||||||||
Sbjct 116 CTCCATCCGGTCGTTAGGTA--TGTTACGCTTCCAAGA---AAAATATAACTACTTTTTA 170
Query 176 TAGTGGGCG-CTGTCCAATATATTGGAGAGCTTGACAGTGTAATAAGATA-TATACTCTA 233
||||||| | |||||| || |||| | ||||||||||||||||||||||| ||| ||| |
Sbjct 171 TAGTGGG-GACTGTCCTATTTATT-G-GAGCTTGACAGTGTAATAAGATATTAT-CTCAA 226
Query 234 CAAGCGTTATACCCGAAGACTGGGTCTATAAATCAATGTCAGAAGGTGAAATGGCCATCA 293
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 227 CGAGCGTTATACCCGAAGACTGGGTCTACAAATCAATGTCAGAAGGTGAAATGGCCATCA 286
Query 294 TTAAACCAGAGATGATGAAATCCTATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 353
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 287 TTAAACCAGAGATGATGAAATCATATATATGGCTTGAAACTGCTGATGGCTCAATCCAAC 346
Query 354 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGG 406
Query 414 GTGTTGGGTCTTCTAAGAACTACGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 473
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 407 GTGTTGGATCTTCTAAGAACTATGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGT 466
Query 474 TAAGCCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 533
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TAAGTCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAAC 526
Query 534 GTAAAGTTTATGATGAAAAATTCATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 593
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 527 GTAAAATTTATGATGAAAAATTCATTCGGATGGATACAAAGAGGCTCTGTGAGTTGACCT 586
Query 594 CAGCCGCTGACAGTTTGCAGTTGAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 653
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 587 CAGCCGCTGACAGTTTGCAGTTAAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCAC 646
Query 654 GAATTATTGAGGGAAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 713
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GAATTATTGAGGGGAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACC 706
Query 714 TTACTGAGGAGGAGAAATTAGAGCCTCTAAAGAACACAATGGATGATCCACGGATTCGAT 773
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 707 TTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACACAATGGATGATCCACGGATTCGAT 766
Query 774 TGTTGAATAGATTGTATGCaaagaaaagaaaagaattgaaagaaagagagaaactaaaga 833
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 767 TGTTGAATAGATTGTATGCAAAGAAAAGAAAGGAATTGAAAGAAAGAGAGAAACTAAAGA 826
Query 834 GTGTCGAGGTCGAAGAACATGTCGATGAGCGTTCAGTGGATGACCTGTTATCATTTATTA 893
|| ||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 827 GTATCGAGGTTGAAGAACATGTCGATGAGCGGTCTGTGGATGACCTATTATCATTTATTA 886
Query 894 ATGGCAGAGATCCCAAGGTGGTAAAGACTTCCAAGAGCAAAAAGAAGAACAAGAAAAGGA 953
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 887 ATGGCAGAGATCCCAAGGTAGTAAAGACTTCTAAGAGCAAAAAGAAGAACAAGAAAAGGA 946
Query 954 AGGAACAGAAGAATGGTTCTTCAAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATA 1013
|||| || || |||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 947 AGGAGCATAAAAATGGTACTTCAAATGGAACATGTGAAGCTTCGGAAAAGGATTCGCATA 1006
Query 1014 ATCTTGATTCCAAATCACAAAGTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAG 1073
||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1007 ATCTTCATTCCAAATCACAAAGTGCTGAGATTATTGACAAGACTGCGTCCTGCTTGGGAG 1066
Query 1074 ATGTGTCTAACTTACCTAGTATGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAG 1133
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 ATGTATCTAACTTACTTAGTATGGAAGATGACATTTTTACGCCAAAAACTGAGTTTGAAG 1126
Query 1134 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAG 1193
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1127 ATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAG 1186
Query 1194 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC 1246
Query 1254 CTGTGAACTTTTCCATAAATGGCAACGGAACTTCAAGACGATTGACAGGTCCAGCTGCAG 1313
||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1247 CTGTGCACTTTTCCATAAATGGCAACGGGACTACAAGGCGATTGACAGGTCCAGCTGCAG 1306
Query 1314 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GACACAAGTGAAGCTGAAAACGCTAGCCCAATGGCTGGAACAGTTTTGGTGAGATCCCCA 1366
Query 1374 CTAGAATGTAAGCAATTAGAGAGAAAGTGGTGTTCCGGTCACCGGCGGTTGATGTGTGTC 1433
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1367 CTAGAATGTAAGCAATTAGAGAGA--GTGGTGTTCCGGTCACCGGCGTTTGATGTGTGTC 1424
Query 1434 ATCCTGTAAtttttcttt-ctttccacaatctgctttctctctttcttctCAGTTAATCC 1492
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1425 CTCCTGTAATTTTTTTTTTCTTTCCACAATCTGCTTTCTCTCTTTCTTCTCAGTTAATTC 1484
Query 1493 GAGAGGTAGGATGCAGttttgttttctttttattttactcctttttagtgatcaaccttt 1552
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||
Sbjct 1485 GAGAGGTAGGATGCAGTTTTGTTTTGTTTTT-TCTTACTCCTTTTTAGTGATCAACCCTT 1543
Query 1553 tgtatacaacttttaATTAAAG 1574
||||||||||||||||||||||
Sbjct 1544 TGTATACAACTTTTAATTAAAG 1565
> Ahg483735 jgi|Araly1|483735|fgenesh2_kg.4__2795__AT2G45950.1
Length=1632
Score = 1077 bits (583), Expect = 0.0
Identities = 922/1083 (85%), Gaps = 33/1083 (3%)
Strand=Plus/Plus
Query 258 TCTATAAATCAATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCCT 317
||||| |||||||||||||||||| ||||| |||| |||||||||| ||||| ||||
Sbjct 339 TCTAT-TATCAATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCT 397
Query 318 ATATATGGCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGT 377
| || |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 398 ACATCTGGCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGT 457
Query 378 TCTGTCCCATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGGTCTTCTAAGAACT-AC 436
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | |
Sbjct 458 TCTGTCCCATGATATGTCAAGAGGTAATACAAAAGGGTGTTGGATCTTCTAAGAA-TCAT 516
Query 437 GCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGTTAAGCCTGATTTTTGATTACTGC 496
|||||||| |||||||| ||||| |||||||| ||||| ||| ||||| ||||||| |||
Sbjct 517 GCAATATCGCTTCCACAACGAGTTAATCCAGCTATGTTCAGCTTGATTCTTGATTATTGC 576
Query 497 AGATTTCATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAGTTTATGATGAAAAATTC 556
|||||||||||| | ||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 577 AGATTTCATCAACTGCCTGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTC 636
Query 557 ATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAGTTG 616
||| | ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 637 ATCAGAATGGACACAAAAAGGCTCTGTGAGTTGACCTCAGCCGCTGATAGTTTGCAGCTG 696
Query 617 AAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGAAAAACCCCT 676
||||| |||||||||||||||||| | || |||||| |||| ||||| ||||||||||||
Sbjct 697 AAGCCTTTGGTTGATCTTACTAGTTGCGCACTTGCAAGAATCATTGAAGGAAAAACCCCT 756
Query 677 GAGGAGATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAG 736
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GAGGAGATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAG 816
Query 737 CCTCTAAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCaaag 796
||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 817 CCTCTGAAGAACACAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCAAAG 876
Query 797 aaaagaaaagaattgaaagaaagagagaaactaaagaGTGTCGAGGTCGAAGAACATGTC 856
|||||||| || ||||||||||||||| | | |||| ||| ||||| |||||||| ||
Sbjct 877 AAAAGAAAGGAGCTGAAAGAAAGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTG 936
Query 857 GATGAGCGTTCAGTGGATGACCTGTTATCATTTATTAATGGCAGAGATCCCAAGGTGGTA 916
|| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 937 GACGAACGTTCTGTGGATGACCTGTTATCATTTATTAATGGCAGAGATTCCAAGGTGGTA 996
Query 917 AAGACT-TCCAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAACAGAAGAATGGTTCTTC 975
|||| | || ||| | ||||||||||| ||||||| |||||| ||||||| || ||||||
Sbjct 997 AAGA-TGTCAAAGGGAAAAAAGAAGAAGAAGAAAAAGAAGGATCAGAAGATTGTTTCTTC 1055
Query 976 AAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATAATCTTGATTCCAAATCA-CAAA 1034
||||| | ||| | | | | | ||||| | |||| ||||| |||||||| || |||
Sbjct 1056 AAATG-A-CAT-TCA---T--G-ACAAGGAATCACATGATCTTCATTCCAAA-CAACAAT 1105
Query 1035 GTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAGATGTGTCTAACTTACCTAGTA 1094
||| ||| | | ||| | | |||| || || |||| || | ||||||||||||
Sbjct 1106 GTGTTGA-A--GA-GAC--TG--G-GTCCAGCATGAGAGAGGTACCCAACTTACCTAGTG 1156
Query 1095 TGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAGATGGTTATATAGATGATGAAA 1154
||||||||||||| |||||||||| | | || |||||||| ||||||| |||||||
Sbjct 1157 CAGAAGATGACATTTCTACGCCAAAGGCCGGGTCTGAAGATGAAGATATAGACGATGAAA 1216
Query 1155 TTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGA 1214
| |||||||| ||| |||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct 1217 TCGATCCAGCCATGAGGGAATTGCTTGATAGAGAGGTAGAAGATTTTGCTCAAAGACTGA 1276
Query 1215 ACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC-CTGTGA-ACTTTTCCATAAA 1272
|||| | |||||||| ||| ||||||||||||| || |||| | |||| ||||||||
Sbjct 1277 ACTCCAATTGGGTTCGGTCGCTAGGACAAGAAAGA-AGGTCTGT-ACACTTCTCCATAAA 1334
Query 1273 TGGCAACGGAACTTCAAGACG--ATTGACAGGTCCAGCTGCAGGACACAAGTGAAGCTGA 1330
||||||||| ||| ||||||| || ||||||| | || || ||||| | || ||||||
Sbjct 1335 TGGCAACGGGACTACAAGACGGCAT--ACAGGTCAATCTCCATGACACGATTGGAGCTGA 1392
Query 1331 AAA 1333
|||
Sbjct 1393 AAA 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5