BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61430.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486618 jgi|Araly1|486618|fgenesh2_kg.5__2610__AT3G61430.2 1500 0.0
Ahg483737 jgi|Araly1|483737|fgenesh2_kg.4__2797__AT2G45960.1 1018 0.0
> Ahg486618 jgi|Araly1|486618|fgenesh2_kg.5__2610__AT3G61430.2
Length=1227
Score = 1500 bits (812), Expect = 0.0
Identities = 1052/1157 (91%), Gaps = 59/1157 (5%)
Strand=Plus/Plus
Query 125 agaagaagaagaagaaaa-aaaa-CAGAGCTTTAC-AATTTCTCTCT--ACAGA--G-AT 176
|||||||||| || |||| |||| || |||||| | ||||||||| | | ||| | ||
Sbjct 108 AGAAGAAGAA-AA-AAAACAAAACCAAAGCTTT-CTAATTTCTCTATAGAGAGATCGAAT 164
Query 177 C--G---AAGAT-ATGGAAGGCAAGGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCC 230
| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 165 CGAGTCAAAGATAATGGAAGGCAAAGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCC 224
Query 231 GGAGAGACAACCAATCGGAACATCAGCTCAGAGTGACAAGGACTACAAGGAACCACCACC 290
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 225 GGAGAGACAACCAATCGGAACATCAGCTCAGAGCGACAAGGACTACAATGAACCACCACC 284
Query 291 AGCTCCGTTTTTCGAACCTGGTGAGCTTTCTTCATGGTCTTTTTGGAGAGCTGGGATCGC 350
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 285 GGCTCCGTTTTTCGAGCCTGGTGAGCTTTCTTCATGGTCCTTTTGGAGAGCTGGGATCGC 344
Query 351 TGAGTTCATCGCTACTTTTCTCTTTCTCTACATCACTGTCTTGACTGTTATGGGAGTGAA 410
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 345 TGAGTTCATCGCTACTTTCCTCTTCCTCTACATCACTGTTTTGACTGTTATGGGAGTTAA 404
Query 411 AAGGTCACCGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGG 470
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AAGGTCACCGAATATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGG 464
Query 471 TATGATATTTGCCTTAGTCTACTGTACCGCTGGTATCTCCGGTGGACACATCAACCCAGC 530
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 465 TATGATCTTTGCCTTAGTCTACTGCACCGCTGGTATCTCCGGTGGACACATCAACCCGGC 524
Query 531 GGTTACTTTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACTAGAGCTCTGTACTACAT 590
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 525 GGTTACTTTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACCAGAGCTCTGTACTACAT 584
Query 591 AGTGATGCAGTGCTTGGGAGCTATCTGTGGTGCTGGAGTGGTTAAAGGGTTCCAGCCTAA 650
||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct 585 AGTGATGCAGTGCTTGGGAGCCATCTGTGGTGCTGGCGTGGTCAAAGGATTCCAGCCTAA 644
Query 651 GCAATACCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAGGGAAG 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 645 GCAATACCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAAGGAAG 704
Query 711 TGGTCTTGGAGCTGAGATCATTGGCACATTCGTTCTTGTATACACAGTCTTCTCAGCAAC 770
|||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct 705 TGGTCTTGGAGCTGAGATTATTGGCACTTTTGTCCTTGTATACACAGTCTTCTCAGCAAC 764
Query 771 TGACGCCAAGAGAAATGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGG 830
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGACGCCAAGAGAAACGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGG 824
Query 831 GTTTGCGGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GTTTGCGGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCC 884
Query 891 AGCTAGAAGCCTTGGAGCTGCAATCATCTACAACAAAGACCATTCCTGGGATGACCACTG 950
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 885 AGCTAGAAGTCTTGGAGCTGCAATCATCTACAACAAAGACCATTCATGGGACGACCACTG 944
Query 951 GGTGTTTTGGGTTGGCCCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGT 1010
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GGTGTTTTGGGTTGGACCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGT 1004
Query 1011 CATCAGAGCCATCCCCTTCAAGTCCAGAAGCTAAGTAAAAACAAGACATCAAGTCCTCTG 1070
||||||||||||||| ||||| |||||||||||||| ||||||||||| || | | ||
Sbjct 1005 CATCAGAGCCATCCCTTTCAAATCCAGAAGCTAAGTTAAAACAAGACAACA---C-T-TG 1059
Query 1071 GTTTCTGGCCTTGTCCTTAGTTGCTTCTATAGTTCTATTGTTGATCTACTACATGTATGT 1130
| | | || |||||||||||| | |||||||||| | |||||||
Sbjct 1060 -T--C---C-TT------AGTTGCTTCTAT--T------GTTGATCTAC-A--TGTATGT 1095
Query 1131 GTGCAATGTGTTTATCTATGTGCCCTCTTAATGCAATATTTGTAAACAAGGAA-GAAGTT 1189
||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||| ||
Sbjct 1096 GTGAAATGTGTTTATCTATATGCCCACTTAATGCAATCTTTGTAAACAAGGAAAGAAATT 1155
Query 1190 CC-AAA-GGAGAATTATTTGCAAATTATGA-T--GTTTA--ACATGTTTATTACAGATCA 1242
|| ||| || || ||||||||||||| | | | ||||| ||| |||||| ||||
Sbjct 1156 CCCAAAAGG-GATTTATTTGCAAATTGTTAATCTGTTTATTACAAA---ATTACA-ATCA 1210
Query 1243 AAGATGTTTAACATGGA 1259
|||||||||||||||||
Sbjct 1211 AAGATGTTTAACATGGA 1227
> Ahg483737 jgi|Araly1|483737|fgenesh2_kg.4__2797__AT2G45960.1
Length=1270
Score = 1018 bits (551), Expect = 0.0
Identities = 764/869 (88%), Gaps = 6/869 (1%)
Strand=Plus/Plus
Query 180 AGATATGGAAGGCAAGGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCCGGAGAGACA 239
||| |||||||| || |||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 141 AGAGATGGAAGGTAAAGAAGAAGATGTTAGAGTCGGAGCTAACAAGTTTCCGGAGAGGCA 200
Query 240 ACCAATCGGAACATCAGCTCAGAGTGACAAGGACTACAAGGAACCACCACCAGCTCCGTT 299
||| |||||||| || |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 201 ACCTATCGGAACTTCTGCTCAGAGCGACAAGGACTACAAGGAGCCACCACCTGCGCCGTT 260
Query 300 TTTCGAACCTGGTGAGCTTTCTTCATGGTCTTTTTGGAGAGCTGGGATCGCTGAGTTCAT 359
||||| || || ||| || |||| ||||| || ||||||||||| ||||||||||||||
Sbjct 261 GTTCGAGCCCGGCGAGATTGCTTCGTGGTCATTCTGGAGAGCTGGAATCGCTGAGTTCAT 320
Query 360 CGCTAC-TTTTCTCTTTCTCTACATCACTGTCTTGACTGTTATGGGAGTGAAAAGGTCAC 418
|||||| |||| | || || ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 321 CGCTACGTTTT-TGTTCCTGTACATCACTGTTTTGACTGTTATGGGTGTGAAGAGGTCAC 379
Query 419 CGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGGTATGATAT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 380 CGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGGTATGATCT 439
Query 479 TTGC-CTTAGTCTACTGTACCGCTGGTATCTCCGGTGGACACATCAACCCAGCGGTTACT 537
| || || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCGCTCTC-GTCTACTGCACCGCTGGTATCTCCGGTGGACACATCAACCCAGCGGTTACG 498
Query 538 TTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACTA-GAGCTCTGTACTACATAGTGAT 596
|| ||| ||||||||||| ||||||| ||||| || | ||||| ||||||||||||||||
Sbjct 499 TTCGGTTTGTTCTTAGCCAGGAAGCTTTCGCTCAC-ACGAGCTGTGTACTACATAGTGAT 557
Query 597 GCAGTGCTTGGGAGCTATCTGTGGTGCTGGAGTGGTTAAAGGGTTCCAGCCTAAGCAATA 656
||||||||| |||||||||||||| ||||| ||||| || |||||||| || ||||||||
Sbjct 558 GCAGTGCTTAGGAGCTATCTGTGGAGCTGGTGTGGTCAAGGGGTTCCAACCAAAGCAATA 617
Query 657 CCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAGGGAAGTGGTCT 716
||||||| | ||||| ||||| ||||| | |||||||||||||| || |||||||||||
Sbjct 618 CCAGGCTTTGGGAGGTGGAGCCAACACCATAGCTCATGGTTACACAAAAGGAAGTGGTCT 677
Query 717 TGGAGCTGAGATCATTGGCACATTCGTTCTTGTATACACAGTCTTCTCAGCAACTGACGC 776
|||||||||||| ||||| || || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 678 TGGAGCTGAGATTATTGGAACCTTTGTCCTTGTTTACACCGTCTTCTCAGCCACTGATGC 737
Query 777 CAAGAGAAATGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGGGTTTGC 836
||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || ||
Sbjct 738 CAAGAGAAACGCTCGTGACTCTCATGTTCCTATTCTAGCACCGCTCCCAATCGGATTCGC 797
Query 837 GGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCCAGCTAG 896
|| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| ||
Sbjct 798 TGTGTTCTTGGTTCACTTAGCAACCATCCCCATCACTGGAACCGGAATCAACCCAGCAAG 857
Query 897 AAGCCTTGGAGCTGCAATCATCTACAACAAAGACCATTCCTGGGATGACCACTGGGTGTT 956
||| ||||||||||||||||| | |||||| ||| | ||||||| ||||| ||||| ||
Sbjct 858 AAGTCTTGGAGCTGCAATCATTTTCAACAAGGACAACGCCTGGGACGACCATTGGGTCTT 917
Query 957 TTGGGTTGGCCCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGTCATCAG 1016
||||||||| || |||||||| ||||||||||||||||| ||||| || | ||||||||
Sbjct 918 TTGGGTTGGACCATTCATTGGTGCTGCACTTGCTGCTCTCTACCACGTTATAGTCATCAG 977
Query 1017 AGCCATCCCCTTCAAGTCCAGAAGCTAAG 1045
||||||||| |||||||||||||||||||
Sbjct 978 AGCCATCCCATTCAAGTCCAGAAGCTAAG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5