BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61440.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486620 jgi|Araly1|486620|fgenesh2_kg.5__2612__AT3G61440.1 2113 0.0
Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557 1188 0.0
> Ahg486620 jgi|Araly1|486620|fgenesh2_kg.5__2612__AT3G61440.1
Length=1349
Score = 2113 bits (1144), Expect = 0.0
Identities = 1281/1348 (95%), Gaps = 6/1348 (0%)
Strand=Plus/Plus
Query 1 GATGCAATGTATTTGTCTCGTTTTCTCATCCATTTATATGATTGCTTTCTTCTCCACCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGCAATGTATTTGTCTCGTTTTCTCATCCATTTATATGATTGCTTTCTTCTCCACCTC 60
Query 61 ACCAATCACTCCTCCTCTAAACTTTTCTTCACTCTCTTGTCTCTTCAAACTTCGGTTACT 120
||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 61 ACCTATCACTCCTCCTCTAAACTTTGATTCACTCTCTTGACTCTTCAAACTTCGTTTACT 120
Query 121 CCGTTTTAGTCGA-CAACAATGGCCTCTGTTTCAAGGAGGTTACTGAGGAGAGAGACGAT 179
||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 121 CCGTTTTAGTC-ATCAACAATGGCCTCTGTTTCAAGGAGGTTACTGAGAAAAGAGACGTT 179
Query 180 CCCCTGTTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGTTGGATCTCCTTCTTTTGC 239
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CCCCTGCTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGGCGGATCTCCTTCTTTTGC 239
Query 240 TCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCTACCAACGCCAAACGTGACGCCTC 299
|||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||
Sbjct 240 TCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCCACTAACGCCAAACGCGATGCATC 299
Query 300 TCTGCTTATTGGGAAAACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGC 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TCTGCTTATTGGGAAAACGCCTCTTGTGTTTCTCAACAAAGTCACTGAAGGTTGTGAAGC 359
Query 360 GTATGTTGCAGCCAAACAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGC 419
|||| |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 360 GTATATTGCAGCCAAGCAAGAACATTTCCAGCCTACATGTAGCATCAAAGACAGACCAGC 419
Query 420 TATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACAACACT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 420 TATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACTACATT 479
Query 480 GATAGAGCCTACTTCAGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGG 539
|||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 480 GATAGAACCCACTTCAGGAAACATGGGAATTAGTTTGGCTTTCATGGCGGCTCTGAAAGG 539
Query 540 GTACAGGATTATAATGACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAG 599
||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GTACAAGATTATTATGACAATGCCTTCATACACTAGCTTGGAGAGGAGAGTGACGATGAG 599
Query 600 ATCCTTTGGTGCTGAGCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAA 659
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 600 ATCCTTTGGTGCAGAGCTTGTTCTCACCGATCCAGCCAAAGGAATGGGTGGAACCGTTAA 659
Query 660 GAAAGCTTATGACCTCCTTGATAGTACTCCTGATGCTTTCATGTGTCAACAGTTTGCTAA 719
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 660 GAAAGCTTATGACCTCCTTGAAAATACTCCTGATGCTTTTATGTGTCAACAGTTTGCTAA 719
Query 720 TCCTGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACT 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCAGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACT 779
Query 780 TGGAAATGTTGATATATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGG 839
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGGAATGTTGATATATTCGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGG 839
Query 840 CCGATACCTTAAATCTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAG 899
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CCAATACCTTAAATCTAAAAACCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAAAG 899
Query 900 CAACATACTCAACGGTGGCAAACCAGGTCCACATGCTATCACAGGCAATGGTGTTGGATT 959
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 900 CAACATACTCAACGGTGGCAAACCAGGTCCGCATGCTATCACAGGCAATGGGGTTGGATT 959
Query 960 CAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGA 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAAACCAGAAATCTTGGACATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGA 1019
Query 1020 TGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATATCGTC 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 TGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTTATGGTTGGGATATCGTC 1079
Query 1080 GGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACT 1139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGGAGCTAACACCGTGGCAGCCATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACT 1139
Query 1140 CATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTGATGA 1199
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1140 CATTGTGACGATTCATGCGAGCTTCGGAGAGAGATATTTGTCGTCTGTTCTGTTTGATGA 1199
Query 1200 GCTGAGGAAAGAAGCAGAGGAGATGAAGCCAGTTTCAGTGGATTGATGAAGGAAGACT-G 1258
|||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
Sbjct 1200 GCTGAGGAAAGAAGCAGAAGAGATGAAGCCGGTTTCAGTTGATTGATGAAGAAAGACTTG 1259
Query 1259 ACACTTTACCAAAAA--TCTCGGGAGCAAAAGATTATAAAAAGAAAGATGTAAGAGTAAT 1316
|| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1260 ACTCTTTACCAAAAAAATCTCGGGAGCAAAAGATTATAAAAACAA-GATGTAAGAGTAAT 1318
Query 1317 AAGTTTGTGTTTATATTGTTCTATTGTT 1344
| |||||| ||||||||||| |||||||
Sbjct 1319 ATGTTTGTATTTATATTGTTGTATTGTT 1346
> Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557
Length=1035
Score = 1188 bits (643), Expect = 0.0
Identities = 893/1011 (88%), Gaps = 28/1011 (3%)
Strand=Plus/Plus
Query 258 CCCCAAAGAC-TTCCCCTCTACCAACGCCAAACGTGACGCCTCTCTGCTTATTGGGAA-A 315
|||||||| | ||||| || || || |||||| | || ||||| |||| | | |||| |
Sbjct 30 CCCCAAAG-CTTTCCCATCCACTAAAGCCAAAGGCGATGCCTCAATGCTCA-TCGGAAGA 87
Query 316 ACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGCGTATGTTGCAGCCAAA 375
|| || |||||||| ||||||||||| |||||||| ||||| || ||| ||||||||||
Sbjct 88 ACTCCACTTGTGTTTCTCAACAAAGTGACTGAAGGATGTGAGGCTTATATTGCAGCCAAG 147
Query 376 CAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGCTATAGCCATGATTGCA 435
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 148 CAAGAACATTTCCAGCCTACTTGTAGCATCAAAGACAGACCAGCTTTAGCCATGATTGTG 207
Query 436 GATGCAGAGAAGAAAAAAC-TAATCATCCCTGGAAAAACAACACTGATAGAGCCTACTTC 494
|||||||||||| |||||| |||||| |||||||||||| ||| ||||||| || |||||
Sbjct 208 GATGCAGAGAAG-AAAAACTTAATCACCCCTGGAAAAACTACATTGATAGAACCCACTTC 266
Query 495 AGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGGGTACAGGATTATAAT 554
||||||||||||||| ||||||||||||||||| || |||||||| |||| |||||| ||
Sbjct 267 AGGAAACATGGGAATTAGTTTGGCTTTCATGGCGGCAATGAAAGGATACAAGATTATTAT 326
Query 555 GACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAGATCCTTTGGTGCTGA 614
|| |||||||| ||||| |||||||||| ||||||||| ||||| ||||||||||| ||
Sbjct 327 AACAATGCCTTCTTACACAAGCTTGGAGAAGAGAGTGACAATGAGGTCCTTTGGTGCAGA 386
Query 615 GCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAAGAAAGCTTATGACCT 674
|||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 387 GCTTGTCCTCACTGATCCAACCAAAGGAATGGGTGGAGCTGTTAAGAAAGCTTATGAACT 446
Query 675 CCTTGATAGTACTCCTGATGCTTTCATG-TGTCAACAGTTTGCTAATCCTGCAAACACTC 733
|||||| | ||||||||||||||| ||| || ||||||||| |||||| ||||||||||
Sbjct 447 CCTTGAGACTACTCCTGATGCTTTTATGTTG-CAACAGTTTAATAATCCAGCAAACACTC 505
Query 734 AGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACTTGGAAATGTTGATA 793
|| |||||| |||||| |||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 506 AGGTTCATTATGATACGACTGGTCCTGAGATTTGGGAAGATACACATGGGAATGTCGATA 565
Query 794 TATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGGCCGATACCTTAAAT 853
|||| |||||||||||||||| |||||| |||||| |||||||||| |||| |||||||
Sbjct 566 TATTCGTGATGGGAATTGGCACTGGAGGTACAGTCACTGGTGTTGGGAGATATCTTAAAT 625
Query 854 CTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACG 913
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTAAAAACCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACG 685
Query 914 GTGGCAAACCAG--GTCCACAT-GC-T-A--TC-ACA-G-G--CA----A--TGGTGTTG 955
|||||||||||| || || | | | | || ||| | | || | ||| ||||
Sbjct 686 GTGGCAAACCAGTTGTGAACTTTGAGTTAGGTCCACATGAGATCACGGGAAATGGGGTTG 745
Query 956 GATTCAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTG 1015
|||| ||||| || ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 746 GATTTAAACCGGATATCTTGGATATGGATGTTATGGACAAAGTTCTTGAGGTTAGTAGTG 805
Query 1016 AGGATGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATAT 1075
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 806 AGGATGCTGTAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGACTCATGGTTGGGATAT 865
Query 1076 CGTCGGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCA 1135
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 866 CGTCGGGAGCTAACACCGTGGCAGCCATTAGACTGGCGAAAATGCCAGAGAATAAAGGCA 925
Query 1136 AACTCATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTG 1195
||||||||||||| |||||| | ||||| ||||| |||||| ||||||||||||||||||
Sbjct 926 AACTCATTGTGACGATTCATCCAAGCTTTGGAGAGAGATATTTGTCGTCTGTTCTGTTTG 985
Query 1196 ATGAGCTGAGGAAAGAAGCAG-AGGAGATGAAGCCAGTTTCAGTGGATTGA 1245
||||||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct 986 ATGAGCTGAGGAAAGAAGCAGCAGAA-ATGAAGCCAGTTTCAGTGGACTGA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5