BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61450.2
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324578 jgi|Araly1|324578|fgenesh1_pm.C_scaffold_5002122 1238 0.0
> Ahg324578 jgi|Araly1|324578|fgenesh1_pm.C_scaffold_5002122
Length=807
Score = 1238 bits (670), Expect = 0.0
Identities = 771/817 (94%), Gaps = 17/817 (2%)
Strand=Plus/Plus
Query 103 ATGGGCGTAATTGATTTGATCACTAGGGTTGATTCCATCTGTAAAAAGTACGAAAAGTAT 162
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGCGTAGTTGATTTGATCACTAGGGTTGATTCCATCTGTAAGAAGTACGAAAAGTAT 60
Query 163 GATATCAATAGACAGAGAGACGCTAATGTCTCCGGCGACGATGCTTTCTCCCGCCTTTAC 222
|||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GATATCGATAAACAGAGAGAAGCTAATGTCTCCGGCGACGACGCTTTCTCCCGCCTTTAC 120
Query 223 TCCGCCGTCGAATATGCTCTCGAAACTGTTCTTCAGAAAACAGAGGATTTGTCGTCTGAG 282
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TCCGCCGTCGAATCTGCGCTCGAAACTGTTCTTCAGAAAACAGAGGATTTATCGTCTGAG 180
Query 283 ACAAACAAAGCGAAAGCTGTGGCGATGAACGCAGAGATTCGAAGAACTAAAGCTCGATTG 342
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACGAACAAAGCGAAAGCTGTGGCGATGAACGCAGAGATTCGAAGAACGAAAGCTCGATTG 240
Query 343 CTTGAAGGAATTCCAAAACTTCAGAGGCTTTCTCTCAAAAAGGTCAAAGGACTTTCAAAG 402
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 241 CTTGAAGGAATTCCAAAACTTCAGAGACTTGCTCTCAAAAAGGTCAAAGGGCTTTCAAAG 300
Query 403 GAGGAGCTTGATGCTAGGAATGATTTGGTTTTGTCATTGAGAGATAAGATTGAGGCCATA 462
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGAGCTTGATGTTAGGAATGATTTGGTTTTGTCATTGAGAGATAAGATTGAGGCCATA 360
Query 463 CCAGAAAGCTCTGCTCCTGTTGTAGGTGGTTGGGAAGCTTCAACATCGTACTCGAATATC 522
||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 361 CCAGAAACCTCTGCTCCTGTTGTAGGTCGTTGGGAAGCTTCAACATCGTATTCGAATATC 420
Query 523 AGATTCGATACTAATGTCTCGGATGACAGAATTGGTAGTGAATATTTCCAGCCAACCGGA 582
|||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||
Sbjct 421 AGATTCGATACTAATGTCTCAGATCACAGAATTGGTAGTGGATATTTCGAGCCAACCGGA 480
Query 583 GAGTCTGATCAGTTTAAGCAAGAGTATGAGATGAAAAGAAT-AAA-A--C-AG-GATCAA 636
||||||||||||||||| |||||||||||||| |||||||| ||| | | || ||||||
Sbjct 481 GAGTCTGATCAGTTTAAACAAGAGTATGAGATTAAAAGAATAAAACAGGCAAGTGATCAA 540
Query 637 GGATTGGATTACATAGCTGAAGGACTGGATACACTCAAGAATATGGCTCAGGACATCAAT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGATTGGATTACATAGCTGAAGGACTGGATACACTCAAGAATATGGCTCAGGACATCAAT 600
Query 697 GAGGAACTTGATAGGCAAGAACCACTCATGGATGAAATAGATACAAAGATTGACAAGGCA 756
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGGAACTTGATAGACAAGAACCACTCATGGATGAAATAGATACAAAGATTGACAAGGCA 660
Query 757 GCTACTGACTTGAAAAGCACCAATGTGAGGCTCAAGGATACTGTAACAAAGTTGAGATCC 816
||||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 661 GCTACTGACCTGAAAAGCACCAATGTGAGGCTTAAGGATACTGTAACAAAG-------CC 713
Query 817 AGCCGCAACTTCTGCATAGACATCATCCTCTTATGCATACTCCTGGGAATCGCTGCCTTC 876
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 -GC---AACTTCTGCATAGACATCATCCTCTTATGCATACTCCTGGGAATCGCTGCCTTC 769
Query 877 ATATACAACTCTGTGAAGTGAAAGCTGGTGATGCCTG 913
||||||||||| |||||||||||||||||||||||||
Sbjct 770 ATATACAACTCGGTGAAGTGAAAGCTGGTGATGCCTG 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5