BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61460.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486623 jgi|Araly1|486623|fgenesh2_kg.5__2615__AT3G61460.1 1057 0.0
> Ahg486623 jgi|Araly1|486623|fgenesh2_kg.5__2615__AT3G61460.1
Length=693
Score = 1057 bits (572), Expect = 0.0
Identities = 670/713 (94%), Gaps = 23/713 (3%)
Strand=Plus/Plus
Query 47 CTCTCTAAAAACCCTAGCTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 106
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTAAAAACCCTAACTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 60
Query 107 ACCGAAGCTTTTCGTACAAACGCTTTCGATTCTCGGATTCATCAGAACCATCGTCTTCTC 166
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 61 ACCGAAGCTTTTCGTACAAACACTTTCGATTCTTGGTTTCATCAGAACCATCGTCTTCTC 120
Query 167 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGATTA 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGACTA 180
Query 227 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCTTTCTCCGCACTCCTAATTAG 286
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 181 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCCTTCTCCGCACTCCTAATCAG 240
Query 287 AGAGATCCTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 346
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGATCTTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 300
Query 347 AAACTGCGCCGTTTGTCTATACGAATTCGAAGGAGAACAAGAGATCCGGTGGCTGAGAAA 406
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 AAACTGCGCCGTTTGTTTATACGAATTCGAAGGAGAGCAAGAGATCCGGTGGCTGAGAAA 360
Query 407 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 420
Query 467 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 480
Query 527 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 540
Query 587 GAAGCCACGcttttctatctttttctgtgtcccttatgttctttttt--gttttgacttt 644
||| |||| | | ||||||||| ||||||||||| |||||||||||
Sbjct 541 GAA-------TTTT-T-T--------GTGTCCCTTGTGTTCTTTTTTTTGTTTTGACTTT 583
Query 645 -cacccctctacttttgatgttgcttttttCACCCCTCTTACTGACATTTAGACTTGCCA 703
||||||| |||||||||| || |||||| |||||| |||||||||| ||||| ||||||
Sbjct 584 TCACCCCTGTACTTTTGATTTTACTTTTTCCACCCC-CTTACTGACAATTAGATTTGCCA 642
Query 704 CGCTTTTATGTGTGTATATACTCCTTACATATGAATGAGAGATGAGCAATAAA 756
||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 643 CGCTTTTATGTGTGTATATTTTG-T-ACATATGAATGAGAGATGAGCAATAAA 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5