BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61470.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486624 jgi|Araly1|486624|fgenesh2_kg.5__2616__AT3G61470.1 1629 0.0
> Ahg486624 jgi|Araly1|486624|fgenesh2_kg.5__2616__AT3G61470.1
Length=1019
Score = 1629 bits (882), Expect = 0.0
Identities = 983/1029 (96%), Gaps = 18/1029 (2%)
Strand=Plus/Plus
Query 1 CTTTTATAGATTACACAACACACGTTCGTTTCTTTCTTCTTCTAACACACTCTGAGTCTT 60
|||||||||||||||| | || ||| ||| |||||||||||||||||| ||||||||
Sbjct 1 CTTTTATAGATTACAC-A-TCA--TTC-CTTCGTTCTTCTTCTAACACACTTTGAGTCTT 55
Query 61 GAAGGTCAACAACGTCGAGAATAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 56 GAAGGTCAACAACGTCGAGAAAAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 115
Query 121 CCATTTCTTCTCCAAGTTTCTTGGGTGGTAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 116 CCATTTCTTCTCCAAGTTTCTTGGGTGGGAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 175
Query 181 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 235
Query 241 CAATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTAGACGGTAGCCTCCCTGGTGACT 300
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 236 CGATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTCGACGGTAGCCTCCCCGGTGACT 295
Query 301 TCGGATTTGATCCTCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCGGATTTGATCCCCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 355
Query 361 CCGAGATAGTCCACTGCCGATGGGCTATGCTAGGAGCCGCCGGGATATTCATCCCAGAGT 420
| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 356 CAGAGCTAGTCCACTGCCGGTGGGCGATGCTAGGAGCCGCCGGGATATTCATCCCGGAGT 415
Query 421 TCCTAACGAAGATCGGAATCCTCAACACTCCGTCATGGTACACGGCGGGAGAGCAAGAGT 480
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 416 TCCTAACGAAGATTGGAATCCTCAACACTCCATCGTGGTACACGGCGGGAGAGCAAGAGT 475
Query 481 ATTTCACGGACAAAACCACACTCTTTGTCGTTGAGCTCATTTTGATCGGATGGGCAGAAG 540
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 476 ATTTCACGGACAAAACCACACTCTTCGTCGTTGAGCTCATCTTGATCGGATGGGCCGAAG 535
Query 541 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 595
Query 601 ACAACAAACTGACGGGCACAGACGTTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGG 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 ACAACAAACTGACGGGCACAGACGTTGGTTACCCGGGTGGGTTATGGTTCGACCCGTTGG 655
Query 661 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 715
Query 721 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 775
Query 781 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 835
Query 841 CTTTCACACCCAAGTGAGACAACGAAAAA-GGGTTATGGGGAGGTG-A-A-TGCGTTTGT 896
|||||||||||||||||||| | |||||| |||||||||||||| | | | |||||||||
Sbjct 836 CTTTCACACCCAAGTGAGACGA-GAAAAAAGGGTTATGGGGAGGAGGAGAATGCGTTTGT 894
Query 897 GTGTGATCATGTTTGTACAAATATCATTTTGAACTTAAAATTATT-ATGTACTTTATATA 955
||| |||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||
Sbjct 895 GTG--ATCATGTTTGTACAAATATCGTTTTGAACTTAAAAATATTTATGTA-TTTATATA 951
Query 956 AATTGTGGTCGAATGCAAATTAAGG-TTCCCCGTAACACTCT-TTT-CCTAACTCAATGA 1012
|||||||||||||||||||||| || ||| || ||||||||| ||| |||||||||||||
Sbjct 952 AATTGTGGTCGAATGCAAATTA-GGATTCACCTTAACACTCTCTTTTCCTAACTCAATGA 1010
Query 1013 TCATAAGAT 1021
|||||||||
Sbjct 1011 TCATAAGAT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5