BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61490.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486630 jgi|Araly1|486630|fgenesh2_kg.5__2622__AT3G61490.1 2527 0.0
Ahg897748 jgi|Araly1|897748|Al_scaffold_0005_1714 209 4e-53
Ahg323502 jgi|Araly1|323502|fgenesh1_pm.C_scaffold_5001046 104 2e-21
> Ahg486630 jgi|Araly1|486630|fgenesh2_kg.5__2622__AT3G61490.1
Length=1502
Score = 2527 bits (1368), Expect = 0.0
Identities = 1458/1502 (97%), Gaps = 3/1502 (0%)
Strand=Plus/Plus
Query 1 TCATCAAACCATTTAGCCTCTCCACACTCACAAAGGGCTCACAAGTCTCAAATACAAAAC 60
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 TCATCAAACCATTTAGCCTCCCCACATTCACAAAGGGCTCACAAGTCACAAATACAAAAC 60
Query 61 AATGAAGAACATACTAGCTTGCATAGTTACCATCATAACCCTCTCAAACCTCATAACCAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATGAAGAACATACTCGCTTGCATAGTTACCATCATAACCCTCTCAAACCTCATAACCAC 120
Query 121 TTCTCAAGGAAGAAGGGTATCACAGTCATTTGAAACATTTGAGTACACAGCAATTATTTG 180
|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||
Sbjct 121 TTCTCAAGGAAGAAGGGTATTACAGTCATTTGAGACATTCGAGTACACAGCAATTACTTG 180
Query 181 CAGATCCCACAGTGCCTCCATAACAGAGTACGGTGGTGTAGGAGACGGCAAGACGCTAAA 240
|||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 181 CAGATCACATAGTGCCTCTATAACAGAGTATGGTGGTGTCGGAGACGGCAAGACGCTAAA 240
Query 241 CACAAAGGCCTTCCAGAGCGCCGTTGATCATCTCAGCCAATACTCATCTGAAGGCGGAGC 300
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 241 CACAAAGGCCTTCCAGAGCGCCGTCGATCATCTCAGCCAATACTCATCTGACGGCGGATC 300
Query 301 ACAGCTCTTTGTACCCGCCGGGAAATGGCTCACCGGAAGTTTCAACCTCACAAGCCATTT 360
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 301 TCAGCTCTTTGTACCCGCCGGAAAATGGCTCACCGGTAGTTTCAACCTCACAAGCCATTT 360
Query 361 CACTCTGTTTCTTCACAAAGACGCAATTCTTCTCGCTGCTCAAGACTTAAACGAATACCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACTCTGTTTCTTCACAAAGACGCAATTCTTCTCGCTGCTCAAGACTTAAACGAATACCC 420
Query 421 AATTCTAAAGGCTTTGCCTTCGTACGGACGAGGACGTGACGCCGCCGGTGGAAGATTCGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTCTAAAGGCTTTGCCTTCGTACGGACGAGGACGTGACGCCGCCGGTGGAAGATTCGC 480
Query 481 TAGTCTCATCTTCGGCACTAATCTCTCCGACGTAATTATCACCGGGAACAACGGCACAAT 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 TAGTCTCATCTTCGGAACTAATCTCTCCGACGTAATTATCACCGGGAACAACGGTACAAT 540
Query 541 CGACGGTCAAGGATCGTTTTGGTGGCAAAAGTTCCACGGTGGCAAGCTAAAATACACTCG 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 CGACGGTCAAGGATCGTTTTGGTGGCAAAAATTCCACGGTGGCAAGCTAAAATACACTCG 600
Query 601 CCCGTACCTGATTGAGTTAATGTTCTCAGATACAATTCAGATTTCAAATCTAACGTTCCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCGTACCTGATTGAGTTAATGTTCTCAGATACAATTCAGATTTCAAATCTAACGTTCCT 660
Query 661 TGATTCTCCATCGTGGAACATCCACCCAGTGTATAGTAGCAATATCATCGTAAAAGGCGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TGATTCTCCATCGTGGAACATCCACCCAGTGTATAGTAGCAATATCATCGTGAAAGGCGT 720
Query 721 TACGATCATCGCCCCGGTAAAATCTCCGAACACCGACGGAATCAATCCAGATTCTTGCAC 780
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACGATCATCGCTCCGGTGAAATCTCCGAACACCGACGGAATCAATCCAGATTCTTGCAC 780
Query 781 GAACACGAGGATCGAAGACTGTTACATCATATCCGGCGACGATTGCATCGCCGTGAAAAG 840
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 781 GAACACGAGGATCGAAGACTGTTACATAATCTCCGGGGACGATTGCATCGCCGTGAAAAG 840
Query 841 CGGATGGGACGAATACGGAATCTCATTCGGAATGCCGACGAAGCACCTCGTGATCCGTAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGATGGGACGAATACGGAATCTCATTCGGAATGCCGACGAAGCACCTCGTGATCCGTAG 900
Query 901 ATTAACCTGTATCTCACCGTACAGCGCCGCGATCGCTCTCGGAAGCGAAATGTCCGGCGG 960
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATTAACCTGTATCTCACCTTACAGCGCCGCGATCGCTCTCGGAAGCGAAATGTCCGGCGG 960
Query 961 AATCGAAGACGTGAGAGCGGAAGATATCACCGCATACCAAACAGAATCCGGCGTACGGAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATCGAAGACGTGAGAGCGGAAGATATCACCGCATACCAAACAGAATCCGGCGTACGGAT 1020
Query 1021 AAAAACCGCCGTAGGAAGAGGAGCTTTCGTGAAGAACATATACGTAAAAGGAATGAATCT 1080
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 AAAAACCGCCGTGGGAAGAGGAGCTTTCGTGAAGAACATATACGTTAAAGGAATGAATCT 1080
Query 1081 ACACACGATGAAATGGGTTTTTTGGATGACCGGAAATTACAAAGCTCATGCTGATTCTCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACACACGATGAAATGGGTTTTTTGGATGACCGGAAATTACAAAGCTCATGCTGATTCTCA 1140
Query 1141 TTACGATCCTCACGCTCTACCGGAGATAACCGGGATTAATTACAGAGATATTGTAGCTGA 1200
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTATGATCCTCACGCTCTACCGGAGATAACCGGGATTAATTACAGAGATATTGTAGCTGA 1200
Query 1201 GAATGTTTCTATGGCTGGAAGGTTAGAGGGAATCTCTGGAGATCCTTTTACTGGGATTTG 1260
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 GAATGTTTCTATGGCGGGAAGGTTAGAGGGAATCTCTGGAGATCCGTTTACTGGGATTTG 1260
Query 1261 TATTTCGAATGCAACGATTTCTATGGCGGCTAAGCATAAGAAAGCGATTTGGATGTGTAG 1320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1261 TATTTCGAATGCAACGATTTCTATGGCGGCTAAACATAAGAAAGCGATTTGGATGTGTAG 1320
Query 1321 TGATGTTGAAGGAGTTACGAGTGGTGTTGATCCTAAGCCTTGTGATTTGCTTGATGGACA 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TGATGTTGAAGGTGTTACGAGTGGTGTTGATCCTAAGCCTTGTGATTTGCTTGATGGACA 1380
Query 1381 AGAATCAGAGACGACGAAGAAGAAGATGATTGACGGTGGATGTGATTTTCCTACTGATGT 1440
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 AGAATC-G-GA-GACGAAGAAGAAGATGATTGACGGTGGATGTGATTTTCCGACTGATGT 1437
Query 1441 GTTGGAGATTGATAATGTTGAGCTTAAGACTTGTAGTTATCAAATGAGTTAGCAAAGTTG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1438 GTTGGAGATTGATAATGTTGAGCTTAAGACTTGTAGTTATCAAATGAGTTAGCAATCTTG 1497
Query 1501 TA 1502
||
Sbjct 1498 TA 1499
> Ahg897748 jgi|Araly1|897748|Al_scaffold_0005_1714
Length=1410
Score = 209 bits (113), Expect = 4e-53
Identities = 369/489 (75%), Gaps = 32/489 (7%)
Strand=Plus/Plus
Query 662 GATTCTCCATCGTGGAACATCCA-CCCAGTGTATAGTAGCAATATCATCGTAAAAGGCGT 720
||||| ||||||||||| || || ||| || ||| ||| || |||| || ||| |||
Sbjct 604 GATTCACCATCGTGGAATATTCATCCC-GTCTATTGTAATAACGTCATTGTCAAATCCGT 662
Query 721 TA-CGATCATCGC-CCCGGTAAAAT-CTCCGAACACCGACGGAATCAATCCAGATTCTTG 777
| || || | || ||| || | | ||| |||||||||||||||||||||||||||||
Sbjct 663 CACCGTTC-TTGCTCCC-GT-CACTGTTCCCAACACCGACGGAATCAATCCAGATTCTTG 719
Query 778 CACGAACACGAG-GATCGAAGACTGTTACATCA-TATCCGGCGACGATTGCATCGCCGTG 835
||| ||||| | |||||||||||| ||||| | | ||||||||||| |||||||| ||
Sbjct 720 CACAAACAC-ATTGATCGAAGACTGCTACAT-AGTCTCCGGCGACGACTGCATCGCGGTA 777
Query 836 AAAAGCGGATGGGACGAATACGGAATCTCATTCGGAATGCCGACGAAGCACCTCGTG-AT 894
|||||||| |||||| ||||||||||| |||||||||||| ||| |||| ||| | ||
Sbjct 778 AAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCAACGCAGCAACTC-TCCAT 836
Query 895 CCGTA-GATTAACCTGTATCTCACCGTACAGCGCCGCGA-TCGCTCTC-GGAAGCGAAAT 951
||| | | | || || ||||| || | || || | || | || || ||||| |||||
Sbjct 837 CCG-ACGGCTCACATGCATCTCCCCAAAGAGTGCAG-GAGTAGC-CTTAGGAAGTGAAAT 893
Query 952 GTCCGGCGGAATCGAAGACGTGAGAGCGGAAGATATCACCGCATA-CCAA-ACAGAATCC 1009
|||||| |||||| ||||||| ||| ||||| | || | || |||| || ||||||
Sbjct 894 GTCCGGAGGAATCAAAGACGTTAGAATTGAAGACGTGACT-C-TAACCAACACCGAATCC 951
Query 1010 GGCG-TACGGATAAAAACCGCCGTAGGAAGAGGAGCTTTCGTGAAGAACATATACG-TAA 1067
| | | || || ||||| || | ||| | ||||||| ||| ||| |||| | || ||
Sbjct 952 G-CAATCCGAATCAAAACTGCGGCGGGACGTGGAGCTTACGTCAAGGACATTTTCGCTAG 1010
Query 1068 AAGGA-ATGAATCTACACACGATGAAATGGGTTTTTTGGATGACCGGAAATTACAA-AGC 1125
|||| | ||| | | |||||||||| ||||| ||||||| ||||| ||||| ||
Sbjct 1011 GAGGATAACAATG-A-AGACGATGAAATACGTTTTCTGGATGAGTGGAAACTACAATAG- 1067
Query 1126 TCATGCTGA 1134
|||| ||||
Sbjct 1068 TCATCCTGA 1076
> Ahg323502 jgi|Araly1|323502|fgenesh1_pm.C_scaffold_5001046
Length=3339
Score = 104 bits (56), Expect = 2e-21
Identities = 133/169 (79%), Gaps = 9/169 (5%)
Strand=Plus/Plus
Query 289 TGAAGGCGGAG-CACAGCTCTTTGTACCCGCC-GGGAAATGGCTCACCGGAAGTTTCAAC 346
||| || |||| | || ||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 2646 TGACGGTGGAGTC-CAACTCATTGTA-CCGCCGGGGAATTGGCTCACCGGAAGTTTCAAC 2703
Query 347 CTCACAAGCCATTTCACTCTGTTTCTTCA-CAAAGACGCAATTCTTCTCGCTGCTCAAGA 405
|||||||||||||| ||| ||||| |||| ||| | |||| | |||| ||| |||| ||
Sbjct 2704 CTCACAAGCCATTTTACTTTGTTTATTCAGCAAGGT-GCAACTATTCTTGCTTCTCAGGA 2762
Query 406 CTTAAAC-GAATACCCAATTCTAAAGGCTTTGCCTTCGTACGGACGAGG 453
| || | ||||| || || | | ||||||| || |||||| ||||
Sbjct 2763 -TGAATCTGAATATCCTATGATTCCGCCTTTGCCGTCATACGGA-GAGG 2809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5