BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61500.2
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486633 jgi|Araly1|486633|fgenesh2_kg.5__2625__AT3G61500.1 603 1e-171
> Ahg486633 jgi|Araly1|486633|fgenesh2_kg.5__2625__AT3G61500.1
Length=969
Score = 603 bits (326), Expect = 1e-171
Identities = 410/449 (91%), Gaps = 11/449 (2%)
Strand=Plus/Plus
Query 86 TATTGAACAACTTTGAGTCATCATTAACCGAGAGATTGAAGAAACTCATACCTCAAAATA 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 38 TATTGAACAACTTTGAGTCATCATTAACCGAGAGATTGAAGAAACTCATACCTCAAAACA 97
Query 146 CAGATGAGATTCTCACCTTACCTTGGATGATTCTAGCTATGGAATTACTTTATGATACAC 205
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 98 AAGATGAGATTCTCACCTTACCTTGGATGATTATTGCTATGGAATTACTTTATGATACAC 157
Query 206 ATAATGATATAAACATTC-TCATCACTGATCTCAAGCTTCATTATATGACTGATTCGGAG 264
|||||||||||||||| | | ||||||||||||||||||||| ||||||||||| ||||
Sbjct 158 ATAATGATATAAACAT-CATGATCACTGATCTCAAGCTTCATGATATGACTGATCCGGAT 216
Query 265 CATGGATATTGGTTTGAGAATT-ACATGAACATAAATACAAAATTGCTCGATCTGTGTAA 323
||||||| ||||| ||| | || ||||||| |||||| |||||| || ||||| | |||
Sbjct 217 CATGGATCTTGGTGTGA-AGTTTACATGAAAATAAATGTAAAATTTCTGGATCTTTTTAA 275
Query 324 CGCTTTTATG-TCCTTGCTTCGTCA-CATGAACCATGGCATTGTT-TGCTTAAAGTTCCT 380
|||||||| | |||||||| | | | |||||||||||||||| || ||||||||| ||||
Sbjct 276 CGCTTTTA-GCTCCTTGCT-CTTAAGCATGAACCATGGCATT-TTATGCTTAAAGCTCCT 332
Query 381 TAGGCATAAATTAGAAATGAAATCTGAGGATCTATGCACTGAGATTTGTTCCGCACTTGA 440
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 333 TAGGCATAAATTAGAAATGAAATCTGAGGATCAATGCACTGAGATTTGTTCCACACTTGA 392
Query 441 TAGTTGGAGGGAAAATATCACCGCGGAAATATCGAAATGCCGCGAAGTTCTTGGGAGATA 500
|||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 393 TAGTTGGAGGGAAAATATTACCGCGGAAATCTCTAAATGCCGCAAAGTTCTTGGGAGATA 452
Query 501 TGTTGAATCATTAAACTTTCATAAATGTC 529
|||| |||||||||||||||||||| |||
Sbjct 453 TGTTAAATCATTAAACTTTCATAAA-GTC 480
Score = 213 bits (115), Expect = 2e-54
Identities = 156/175 (89%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 629 AAGGTGATGATCTTGTTCAAGAGTCCTTTAAGGAATCTATTGAGGAATGCAAAGAAGAAG 688
|||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||
Sbjct 767 AAGGTGATGATCTTGTTCAAGAATTGTTTGAGGAATCTATTGTGGAATGCAAAGAAGAAG 826
Query 689 TCGAGAAACTGGAACAT-GGGTTAGATGAAATCTTCA-GGAAAATTGGCAACTTGTCT-G 745
||||||||||||| || |||| ||||||| ||| || ||||||||| |||||||||| |
Sbjct 827 TCGAGAAACTGGATCAAAGGGT-AGATGAACTCT-CAAGGAAAATTGACAACTTGTCTAG 884
Query 746 ATGTAACCTTTAAAGGACGTGAAATCATTCGTGACGGTTTATTTGATTCAATGAT 800
| ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 885 -TATAACCTTTAAAGGACGTCAAACCATTCGTGAAGGTTTATTTGATTCAATGAT 938
Score = 174 bits (94), Expect = 9e-43
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 526 TGTCTTTGTGATAGTTTTGTCGAATTCCGACAAAGATATTTTGCCTATATATGTCTGGAA 585
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 558 TGTGTTTGTGATAGTTTTGTCGAATTCCGACAAAGATATTTTGCCTATACATGTCTCGAA 617
Query 586 GCAATCATTGTGGAAAAAAGATTTCTTGGATTTGCAGACTATC 628
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GCAATCATTGTGGAAAAAAGATTTCTTGGATTTGCAGACTATC 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5