BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61510.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899116 jgi|Araly1|899116|Al_scaffold_0005_3082 2159 0.0
> Ahg899116 jgi|Araly1|899116|Al_scaffold_0005_3082
Length=1458
Score = 2159 bits (1169), Expect = 0.0
Identities = 1365/1458 (94%), Gaps = 19/1458 (1%)
Strand=Plus/Plus
Query 24 TCAACTTCTATCCAAATTAG-CTTTGAGTGACAAACATGGAGAAGCTTCGCCGTACTTCC 82
||| || ||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 6 TCAGCTACTATCCAAATTAGCCTCT-AGTGACAAACACGGAGAAGCTTCGCCGTACTTTG 64
Query 83 ATGGCTGGAAAGCTTACGACAATAATCCTTTTCATCCAACTCATAATCCACAAGGAGTTA 142
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 65 ATGGTTGGAAAGCTTACGACAATAATCCTTATCATCCAACTCATAATCCACATGGTGTTA 124
Query 143 TTCAAATGGGTCTCGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGATAAAGG 202
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 125 TTCAAATGGGTCTTGCCGAAAATCAACTTTGTTCAGATTTGATCAAAGAATGGAT-AAGG 183
Query 203 -AAAATCCACAGGCATCTATTTGTACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCT 261
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 184 AAAAATCCACAAGCATCTATTTGCACGGCGGAGGGAATTGACTCTTTCTCCGACATTGCT 243
Query 262 GTTTTTCAAGATTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGACGTTTATggag 321
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 244 GTTTTTCAAGACTATCACGGTCTCAAACAATTTAGACAGGCGATTGCGGCGTTTATGGAG 303
Query 322 agagcgagaggcgggcgggtgaggtttgaggcggagagggtggtgatgagcggaggagCC 381
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 304 AGAGCGAGAGGCGGACGGGTGAGTTTTGAGGCGGAGAGGGTGGTGATGAGCGGAGGAGCC 363
Query 382 ACCGGAGCAAATGAGACGATCATGTTCTGTCTTGCTGATCCCGGCGACGCTTTTCTCGTC 441
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 364 ACCGGAGCAAATGAGACGCTCATGTTCTGTCTTGCTGATCCCGGCGATGCTTTTCTCGTC 423
Query 442 CCTACTCCTTATTATGCTGCATTCGATAGAGACTTAAGGTGGAGAACTGGAGTTAGAATA 501
|||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 424 CCTACTCCATATTATGCAGCATTCGACAGAGACTTAAGGTGGAGAACTGGAATTAGAATA 483
Query 502 ATCCCTGTGGAGTGTAGCAGCTCAAACAATTTCCAGATTACAAAACAAGCCCTAGAATCA 561
||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 484 ATCCCTGTGGAATGTAACAGCTCAAACAATTTCCAGGTTACAAAACAAGCCCTAGAATCA 543
Query 562 GCGTACCTTAAGGCCCAAGAAACCGGTATCAAGATCAAAGGCCTG---AT--C--A-TC- 612
|||| ||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 544 ACGTATCTTAAGGCCCAAGAAACCGGTATCAAGATCAAAGGCCTGATAATCGCAAACCCA 603
Query 613 TCAAACCCTCTTGGAACATCTCTCGATCGAGAAACTCTTGAAAGCCTTGTCAGCTTCATC 672
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 604 TCAAACCCTCTTGGAACATCTCTTGATCGAGAAACTCTTGAAAGCCTTGTCAGCTTCATC 663
Query 673 AACGACAAGCAAATTCACTTAGTATGCGACGAAATATACGCAGCAACGGTTTTTGCGGAA 732
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 664 AACGACAAACAAATTCATTTAGTATGCGACGAAATCTACGCAGCAACGGTTTTTGCAGAA 723
Query 733 CCGGGATTCATCAGTGTTGCAGAGATCATCCAAGAGAT-GTATTATGTTAACCGTGATCT 791
||| |||||||||||||||||||||||||| |||||| || | ||||||||||||||||
Sbjct 724 CCGAAATTCATCAGTGTTGCAGAGATCATCCTAGAGATGGT-TCATGTTAACCGTGATCT 782
Query 792 GATTCATATCGTCTACAGTCTTTCAAAGGACATGGGTCTTCCCGGTTTCCGGGTTGGAGT 851
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 783 GATCCATATCGTTTACAGTCTTTCAAAGGACATGGGTCTCCCCGGTTTCCGGGTTGGAGT 842
Query 852 GGTTTACTCTTACAACGATGTTGTTGTGTCCTGCGCAAGGAGGATGTCGAGTTTTGGATT 911
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 843 GGTTTACTCTTACAACGATGTTGTTGTGTCCTGCGCAAGGAAGATGTCGAGTTTTGGATT 902
Query 912 GGTCTCGTCGCAGACACAAAGTTTTCTAGCTGCTATGTTGTCTGATCAGAGTTTTGTCGA 971
|||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 903 GGTCTCGTCGCAGATACAAAGTTTTGTAGCTGCTATGTTGTCTGATCAAAGGTTTGTCGA 962
Query 972 TAACTTTCTTGTTGAGGTTTCGAAA-AGAGTAGCGAAGAGACACCATATGTTCACGGAAG 1030
|||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 963 TAACATTCTTGTTGAGGTTTC-AAAGAGAGTAGCAAAGAGACACCATATGTTCACGGAAG 1021
Query 1031 GGCTTGAAGAGATGGGGATTTCTTGCTTGAGAAGCAACGCGGGTTTATTCGTTTTGATGG 1090
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1022 GGCTTGAAGAGATGGGGATTTCTTGCTTGAGAAGCAACGCAGGTTTATACGTCTTGATGG 1081
Query 1091 ATTTGAGGCATATGCTTAAGGATCAGACATTTGATTCCGAAATGGCGCTTTGGCGAGTTA 1150
|||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1082 ATTTAAGGCAGATGCTTAAGGATCAGACATTTGAGTCCGAAATAGCGCTTTGGCGAGTGA 1141
Query 1151 TTATCAATAAGGTCAAGATTAATGTCTCTCCTGGCTCGTCGTTTCACTGCTCTGAGCCTG 1210
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1142 TTATCAATAAGGTCAAGATTAATATCTCTCCTGGCTCGTCGTTTCACTGCTCTGAGCCAG 1201
Query 1211 GTTGGTTCCGAGTCTGCTTTGCTAATATGGACGAAGACACACTCCAAATTGCACTTGA-A 1269
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1202 GTTGGTTCCGAGTTTGCTTTGCTAATATGGACGAAGACACACTCCAAATTGGACTTGAGA 1261
Query 1270 CGAATCAAAGACTTTGTGGTTGGAGACAGAGCCAACAAGAACAAGAACTGTAACTGCATT 1329
|||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1262 -GAATCAAAGACTTTGTACTTGGAGACAAAGCCTCCAAGAACAAGAATTGTAACTGCATT 1320
Query 1330 TGCAACAACAAAAGGGAGAACAAGAAACGTAAGAGTTTTCAAAAGAATCTCAAGCTGAGT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 TGCAACAACAAAAGGGAGAACAAGAAACGTAAGAGTTTTCAAAAGAATCTCAAACTGAGT 1380
Query 1390 TTATCTTCGATGAGGTACGAGGAACATGTTAGGTCACCAAAGTTGATGTCTCCTCATTCA 1449
|| |||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 TTCTCTTCGATGATGTATGATGAACATGTTAGGTCACCAAAGTTGATGTCCCCTCATTCA 1440
Query 1450 CCATTGCTTCGAGCTTAA 1467
|| ||||| |||||||||
Sbjct 1441 CCGTTGCTCCGAGCTTAA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5