BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61530.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486638 jgi|Araly1|486638|fgenesh2_kg.5__2630__AT3G61530.1 1925 0.0
Ahg935577 jgi|Araly1|935577|scaffold_403565.1 845 0.0
> Ahg486638 jgi|Araly1|486638|fgenesh2_kg.5__2630__AT3G61530.1
Length=1221
Score = 1925 bits (1042), Expect = 0.0
Identities = 1167/1225 (95%), Gaps = 18/1225 (1%)
Strand=Plus/Plus
Query 13 AATTCCAAAATCGCTTTCATCAGCAACAACAATGGCTGCTTCGCTCGTCAGGAGTTGTTG 72
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AATTCCAAAATCGCTTTCATCAGCAACAACAATGGCTGCTTCGCTCGTCAGGA---GTTG 57
Query 73 CTCTCGTGCTTCGAGAGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGGACAC 132
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 CTCTCGTGCTTCGAGGGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGAACAC 117
Query 133 GGTTTACGGAGGACCGAAACCGCAGAACTCGAATCAGAGAGTGACTTTGACGCAATTGAG 192
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 118 GGTTTACGGAGGACCGAAATCGCAGAACCCGAATCAGAGAGTGACTTTGACGCAATTGAG 177
Query 193 ACAGAAGCATCGGAAAGGTGAGCCGATAACTATGGTCACCGCCTACGATTACCCTTCTGC 252
||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 178 ACAGAAGCATCGGAAAGGTGAGCCGATTACTATGGTCACCGCCTATGATTATCCGTCTGC 237
Query 253 CGTTCACATCGATACAGCTGGAATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGT 312
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 238 CGTTCACATCGATACAGCCGGAATTGATGTTTGTCTCGTCGGAGATTCAGCTGCAATGGT 297
Query 313 TGTCCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCG 372
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGTTCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCG 357
Query 373 CGCCGTTGCTCGCGGAGCCAAAAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTA 432
|||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 358 CGCCGTCGCTCGTGGAGCCAAAAGACCACTTCTTGTTGGCGATTTGCCATTTGGTACTTA 417
Query 433 TGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAAT 492
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 418 TGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTAAGAGTGTTGAAAGAAGGAGGAAT 477
Query 493 GGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGT 537
Query 553 GGAAGCAGGGATTGCCGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCT 612
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAAGCAGGAATTGCTGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCT 597
Query 613 TGGTGGTTTCAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGC 672
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGTGGTTTTAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGC 657
Query 673 TATGGCTTTGCAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGT 732
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 AATGGCTTTACAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCGCCTCCTGT 717
Query 733 GGCTGCTGCTGCAACCTCTGCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTT 792
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 GGCTGCTGCTGCAACCTCTGCTCTTCATATTCCAACCATTGGCATAGGAGCTGGCCCTTT 777
Query 793 CTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCA 837
Query 853 CGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAA 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAA 897
Query 913 AGCCCTCTTGGAGTATAAGGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAG 972
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 898 AGCCCTCTTAGAGTATAAGGAAGAAGTATCTAAACACTTGTTTCCAGGTCTTTCTCATAG 957
Query 973 CCCTTACAAGATCTCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAAT-TGG 1031
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 958 CCCTTACAAGATCGCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAA-TCTGG 1016
Query 1032 GATTAGATAAAGCTGCTTCTGATGCAGCAGCATCAGCTGAAAAGATGGATCATTCAGATT 1091
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1017 GATTAGATAAGGCTGCTTCTGCTGCAGCAGCATCAGCTGAAAAGATGGAGCATTCAGATT 1076
Query 1092 CACCATCTTCTCAGTGACAAAGCTGTTGCAATTCTCGTAGCTCTTCATTTTGAGTAGG-- 1149
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1077 CACCATCTTCTCAGTGACAAAGCTGTACCAATTCTCTTAGCTCTTCATTTTGAGTAGGCA 1136
Query 1150 ------T-TG----AAGAAATAAAAATCCTTTAATAGGATAGTTATTAGCGGGTAAAACT 1198
| || |||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 1137 GGCAGATCTGGTTCAAGAAATAAAAATCCTTTAATAGGATAGTTTTTTGCGGGTAAAATT 1196
Query 1199 AGTGTAATCCATAGGAGCTATTTCA 1223
|||||||||||||||||||||||||
Sbjct 1197 AGTGTAATCCATAGGAGCTATTTCA 1221
> Ahg935577 jgi|Araly1|935577|scaffold_403565.1
Length=1084
Score = 845 bits (457), Expect = 0.0
Identities = 823/999 (82%), Gaps = 27/999 (3%)
Strand=Plus/Plus
Query 101 GTCCGGTTT-ATGAGCAACGTACCGGAGGACACGGTTTACGGAGGACCGAAA-CCGCAGA 158
|||| |||| ||||| ||| |||||||| |||| || ||||||||||| ||| ||||| |
Sbjct 74 GTCC-GTTTCATGAGTAACCTACCGGAGAACACCGTCTACGGAGGACC-AAAGCCGCAAA 131
Query 159 ACTCGAATCAGAGAGTGACTTTGACGCAAT-TGAGACAGAAGCATCGGAAAGGTGAGCCG 217
|| | || || |||||||| | |||| || | ||||| || || |||||||| || |||
Sbjct 132 ACCCAAACCAAAGAGTGACGCTAACGC-ATCTCAGACAAAAACACCGGAAAGGAGAACCG 190
Query 218 ATAACTATGGTCACCGCCTACGATTACCCTTCTGCCGTTCACATCGATACA---GCTGGA 274
|| || | || || |||||||||||||| || |||||||| | || ||| |||||
Sbjct 191 ATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACACAGCTGCTGGT 250
Query 275 ATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGTTGTCCATGGCT-ATGACACCAC 333
|||||||||||||| || || || |||||| |||||||||| ||||| | | ||||| ||
Sbjct 251 ATCGATGTTTGTCTTGTTGGTGACTCAGCTTCCATGGTTGTTCATGG-TCACGACACAAC 309
Query 334 TCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCGCGCCGTTGCTCGCGGAGCCAA 393
||||||||||||||||| ||||||||||| || ||||| ||||||||||| || || ||
Sbjct 310 ACTTCCTATCTCCTTAGACGAGATGCTTGTCCATTGTCGAGCCGTTGCTCGAGGCGCTAA 369
Query 394 AAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTATGAATCTAGCACCAATCAGGC 453
| | || || || || || || ||||| |||||||| || || || ||| | | | ||
Sbjct 370 ACGGCCTCTCCTAGTTGGTGACTTGCC-TTTGGTACCTACGAGTCAAGC-TC--T-A-GC 423
Query 454 GGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAATGGATGCTATTAAACTTGAAGG 513
||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 424 GGTTGATACTGTTGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAAGCTCGAAGG 483
Query 514 AGGATCAC-CTTCAAGGATCACTGCTGCAAAATCCATTGTGGAAGCAGGGATTGCCGTTA 572
|||||| | |||| |||||||||||||||||| |||| || |||||||| ||||| ||||
Sbjct 484 AGGATC-CGCTTCTAGGATCACTGCTGCAAAAGCCATAGTTGAAGCAGGAATTGCGGTTA 542
Query 573 TGGGACATGTTGGGT-TGACTCCTCAAGCTATCAGTGTTCTTGGTGGTTTCAGGCCACAG 631
| || |||| ||||| | |||||||| || ||||| ||||||||||||||||| || ||
Sbjct 543 TCGGTCATG-TGGGTCTAACTCCTCAGGCGATCAGCGTTCTTGGTGGTTTCAGACCCCAA 601
Query 632 GGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGCTATGGCTTTGCAAGAAGCT 691
|||| |||||| |||||||||||||| ||||| || ||||| |||||||| |||||||||
Sbjct 602 GGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACAAGAAGCT 661
Query 692 GGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGTGGCTGCTGCTGCAACCTCT 751
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 662 GGATGTTTTTCTGTTGTTTTGGAATGCATTCCACCTCCTGTGGCTGCTGCTGCAACCTCT 721
Query 752 GCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGGTTTTA 811
|| || || || |||||||||||||| || ||||| || ||||||||||| ||||| ||
Sbjct 722 GCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCATTCTGCAGTGGACAGGTGCTA 781
Query 812 GTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGGTTACTCCAAAG 871
|| |||||||||||||| || |||||||| ||||||||||| || |||||||||||||||
Sbjct 782 GTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTACTCCAAAG 841
Query 872 TTTTGCAAACAGTACGCTCAA-GTAGGAGAAGTGATCAACAAAGCCCTCTTGGAGTATAA 930
|||||||| ||||||||| || |||||||||||||| ||||||||| | |||| || ||
Sbjct 842 TTTTGCAAGCAGTACGCT-AATGTAGGAGAAGTGATTAACAAAGCCTTAATGGAATACAA 900
Query 931 GGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAGCCCTTACAAGATCTCCTC 990
|||||||| || ||| | |||||||||||||||||||||| |||||||||||| | |
Sbjct 901 AGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGATCACAGC 960
Query 991 AAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAA-TTGGGATTAGATAAAGCTGCTT 1049
|||||| || || || ||||||| |||||| ||||| |||| || || || || | ||
Sbjct 961 AAGCGAGCTCGATGGGTTCTTAACCGAGTTGCAGAATCTTGGCTTT-GACAAGGCCGTTT 1019
Query 1050 CTG-ATGCAGCAGCATCAGCTGAAAAGATGGATCATTCA 1087
||| | ||||| || || |||| || ||||| | ||||
Sbjct 1020 CTGCA-GCAGCTTCAGCAACTGAGAACATGGAGCCTTCA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5