BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61530.1 Length=1358 Score E Sequences producing significant alignments: (Bits) Value Ahg486638 jgi|Araly1|486638|fgenesh2_kg.5__2630__AT3G61530.1 1925 0.0 Ahg935577 jgi|Araly1|935577|scaffold_403565.1 845 0.0 > Ahg486638 jgi|Araly1|486638|fgenesh2_kg.5__2630__AT3G61530.1 Length=1221 Score = 1925 bits (1042), Expect = 0.0 Identities = 1167/1225 (95%), Gaps = 18/1225 (1%) Strand=Plus/Plus Query 13 AATTCCAAAATCGCTTTCATCAGCAACAACAATGGCTGCTTCGCTCGTCAGGAGTTGTTG 72 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 AATTCCAAAATCGCTTTCATCAGCAACAACAATGGCTGCTTCGCTCGTCAGGA---GTTG 57 Query 73 CTCTCGTGCTTCGAGAGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGGACAC 132 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 58 CTCTCGTGCTTCGAGGGCCATCACCACCGTCCGGTTTATGAGCAACGTACCGGAGAACAC 117 Query 133 GGTTTACGGAGGACCGAAACCGCAGAACTCGAATCAGAGAGTGACTTTGACGCAATTGAG 192 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 118 GGTTTACGGAGGACCGAAATCGCAGAACCCGAATCAGAGAGTGACTTTGACGCAATTGAG 177 Query 193 ACAGAAGCATCGGAAAGGTGAGCCGATAACTATGGTCACCGCCTACGATTACCCTTCTGC 252 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| Sbjct 178 ACAGAAGCATCGGAAAGGTGAGCCGATTACTATGGTCACCGCCTATGATTATCCGTCTGC 237 Query 253 CGTTCACATCGATACAGCTGGAATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGT 312 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 238 CGTTCACATCGATACAGCCGGAATTGATGTTTGTCTCGTCGGAGATTCAGCTGCAATGGT 297 Query 313 TGTCCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCG 372 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TGTTCATGGCTATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCG 357 Query 373 CGCCGTTGCTCGCGGAGCCAAAAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTA 432 |||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 358 CGCCGTCGCTCGTGGAGCCAAAAGACCACTTCTTGTTGGCGATTTGCCATTTGGTACTTA 417 Query 433 TGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAAT 492 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 418 TGAATCTAGCACCAATCAGGCGGTTGATACTGCAGTAAGAGTGTTGAAAGAAGGAGGAAT 477 Query 493 GGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGT 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GGATGCTATTAAACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGT 537 Query 553 GGAAGCAGGGATTGCCGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCT 612 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GGAAGCAGGAATTGCTGTTATGGGACATGTTGGGTTGACTCCTCAAGCTATCAGTGTTCT 597 Query 613 TGGTGGTTTCAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGC 672 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TGGTGGTTTTAGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGC 657 Query 673 TATGGCTTTGCAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGT 732 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 658 AATGGCTTTACAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCGCCTCCTGT 717 Query 733 GGCTGCTGCTGCAACCTCTGCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTT 792 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 718 GGCTGCTGCTGCAACCTCTGCTCTTCATATTCCAACCATTGGCATAGGAGCTGGCCCTTT 777 Query 793 CTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCA 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CTGCAGTGGTCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCA 837 Query 853 CGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAA 912 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TGCTAAGGTTACTCCAAAGTTTTGCAAACAGTACGCTCAAGTAGGAGAAGTGATCAACAA 897 Query 913 AGCCCTCTTGGAGTATAAGGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAG 972 ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| || Sbjct 898 AGCCCTCTTAGAGTATAAGGAAGAAGTATCTAAACACTTGTTTCCAGGTCTTTCTCATAG 957 Query 973 CCCTTACAAGATCTCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAAT-TGG 1031 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 958 CCCTTACAAGATCGCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAA-TCTGG 1016 Query 1032 GATTAGATAAAGCTGCTTCTGATGCAGCAGCATCAGCTGAAAAGATGGATCATTCAGATT 1091 |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1017 GATTAGATAAGGCTGCTTCTGCTGCAGCAGCATCAGCTGAAAAGATGGAGCATTCAGATT 1076 Query 1092 CACCATCTTCTCAGTGACAAAGCTGTTGCAATTCTCGTAGCTCTTCATTTTGAGTAGG-- 1149 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1077 CACCATCTTCTCAGTGACAAAGCTGTACCAATTCTCTTAGCTCTTCATTTTGAGTAGGCA 1136 Query 1150 ------T-TG----AAGAAATAAAAATCCTTTAATAGGATAGTTATTAGCGGGTAAAACT 1198 | || |||||||||||||||||||||||||||||| || |||||||||| | Sbjct 1137 GGCAGATCTGGTTCAAGAAATAAAAATCCTTTAATAGGATAGTTTTTTGCGGGTAAAATT 1196 Query 1199 AGTGTAATCCATAGGAGCTATTTCA 1223 ||||||||||||||||||||||||| Sbjct 1197 AGTGTAATCCATAGGAGCTATTTCA 1221 > Ahg935577 jgi|Araly1|935577|scaffold_403565.1 Length=1084 Score = 845 bits (457), Expect = 0.0 Identities = 823/999 (82%), Gaps = 27/999 (3%) Strand=Plus/Plus Query 101 GTCCGGTTT-ATGAGCAACGTACCGGAGGACACGGTTTACGGAGGACCGAAA-CCGCAGA 158 |||| |||| ||||| ||| |||||||| |||| || ||||||||||| ||| ||||| | Sbjct 74 GTCC-GTTTCATGAGTAACCTACCGGAGAACACCGTCTACGGAGGACC-AAAGCCGCAAA 131 Query 159 ACTCGAATCAGAGAGTGACTTTGACGCAAT-TGAGACAGAAGCATCGGAAAGGTGAGCCG 217 || | || || |||||||| | |||| || | ||||| || || |||||||| || ||| Sbjct 132 ACCCAAACCAAAGAGTGACGCTAACGC-ATCTCAGACAAAAACACCGGAAAGGAGAACCG 190 Query 218 ATAACTATGGTCACCGCCTACGATTACCCTTCTGCCGTTCACATCGATACA---GCTGGA 274 || || | || || |||||||||||||| || |||||||| | || ||| ||||| Sbjct 191 ATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACACAGCTGCTGGT 250 Query 275 ATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGTTGTCCATGGCT-ATGACACCAC 333 |||||||||||||| || || || |||||| |||||||||| ||||| | | ||||| || Sbjct 251 ATCGATGTTTGTCTTGTTGGTGACTCAGCTTCCATGGTTGTTCATGG-TCACGACACAAC 309 Query 334 TCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCGCGCCGTTGCTCGCGGAGCCAA 393 ||||||||||||||||| ||||||||||| || ||||| ||||||||||| || || || Sbjct 310 ACTTCCTATCTCCTTAGACGAGATGCTTGTCCATTGTCGAGCCGTTGCTCGAGGCGCTAA 369 Query 394 AAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTATGAATCTAGCACCAATCAGGC 453 | | || || || || || || ||||| |||||||| || || || ||| | | | || Sbjct 370 ACGGCCTCTCCTAGTTGGTGACTTGCC-TTTGGTACCTACGAGTCAAGC-TC--T-A-GC 423 Query 454 GGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAATGGATGCTATTAAACTTGAAGG 513 ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 424 GGTTGATACTGTTGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAAGCTCGAAGG 483 Query 514 AGGATCAC-CTTCAAGGATCACTGCTGCAAAATCCATTGTGGAAGCAGGGATTGCCGTTA 572 |||||| | |||| |||||||||||||||||| |||| || |||||||| ||||| |||| Sbjct 484 AGGATC-CGCTTCTAGGATCACTGCTGCAAAAGCCATAGTTGAAGCAGGAATTGCGGTTA 542 Query 573 TGGGACATGTTGGGT-TGACTCCTCAAGCTATCAGTGTTCTTGGTGGTTTCAGGCCACAG 631 | || |||| ||||| | |||||||| || ||||| ||||||||||||||||| || || Sbjct 543 TCGGTCATG-TGGGTCTAACTCCTCAGGCGATCAGCGTTCTTGGTGGTTTCAGACCCCAA 601 Query 632 GGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGCTATGGCTTTGCAAGAAGCT 691 |||| |||||| |||||||||||||| ||||| || ||||| |||||||| ||||||||| Sbjct 602 GGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACAAGAAGCT 661 Query 692 GGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGTGGCTGCTGCTGCAACCTCT 751 ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 662 GGATGTTTTTCTGTTGTTTTGGAATGCATTCCACCTCCTGTGGCTGCTGCTGCAACCTCT 721 Query 752 GCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGGTTTTA 811 || || || || |||||||||||||| || ||||| || ||||||||||| ||||| || Sbjct 722 GCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCATTCTGCAGTGGACAGGTGCTA 781 Query 812 GTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGGTTACTCCAAAG 871 || |||||||||||||| || |||||||| ||||||||||| || ||||||||||||||| Sbjct 782 GTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTACTCCAAAG 841 Query 872 TTTTGCAAACAGTACGCTCAA-GTAGGAGAAGTGATCAACAAAGCCCTCTTGGAGTATAA 930 |||||||| ||||||||| || |||||||||||||| ||||||||| | |||| || || Sbjct 842 TTTTGCAAGCAGTACGCT-AATGTAGGAGAAGTGATTAACAAAGCCTTAATGGAATACAA 900 Query 931 GGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAGCCCTTACAAGATCTCCTC 990 |||||||| || ||| | |||||||||||||||||||||| |||||||||||| | | Sbjct 901 AGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGATCACAGC 960 Query 991 AAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAA-TTGGGATTAGATAAAGCTGCTT 1049 |||||| || || || ||||||| |||||| ||||| |||| || || || || | || Sbjct 961 AAGCGAGCTCGATGGGTTCTTAACCGAGTTGCAGAATCTTGGCTTT-GACAAGGCCGTTT 1019 Query 1050 CTG-ATGCAGCAGCATCAGCTGAAAAGATGGATCATTCA 1087 ||| | ||||| || || |||| || ||||| | |||| Sbjct 1020 CTGCA-GCAGCTTCAGCAACTGAGAACATGGAGCCTTCA 1057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50817848361 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5