BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61540.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486640 jgi|Araly1|486640|fgenesh2_kg.5__2632__AT3G61540.1 2551 0.0
Ahg928093 jgi|Araly1|928093|scaffold_300550.1 60.2 5e-08
> Ahg486640 jgi|Araly1|486640|fgenesh2_kg.5__2632__AT3G61540.1
Length=1700
Score = 2551 bits (1381), Expect = 0.0
Identities = 1603/1707 (94%), Gaps = 27/1707 (2%)
Strand=Plus/Plus
Query 3 GAATAAAAACGATGTTGGCGACTCACGCGCTGGTGACTCCGATTCCAAAGTTGACTGCTT 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATAAAAACGATGTTGGCGACTCACGCGCTGGTGACTCCGATTCCAAAGTTGACTGCTT 60
Query 63 TCGTACTCTCTCTATCTACTACTCCATC-AAGATTGTCTGGTTCTGTTCCGGGTTTGATT 121
||||||||||| |||||||||||||||| || || ||||||||| ||||||||||| ||
Sbjct 61 TCGTACTCTCTTTATCTACTACTCCATCGAA-ATCGTCTGGTTCAGTTCCGGGTTTTATC 119
Query 122 GATTTCTACCGTCGCCGGAGATTTTGTCGTGTAATCACCTCCATGGCTGAAGCGGGATCG 181
||||||| ||||||||||||||||||||||||||||| |||||||||| ||| | ||||
Sbjct 120 AATTTCTATCGTCGCCGGAGATTTTGTCGTGTAATCACTTCCATGGCTGGAGCAGAATCG 179
Query 182 GTTTACGTCGATG-TAGCTGGGGAATCGAAGTCGGAGCATGTTACTGGGAAGTGGTTTTC 240
|| | |||||| | ||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 180 GTCTCCGTCGA-GATAGCTGGGGAATCGAGGTCGGAGCATGTCACAGGGAAGTGGTTTTC 238
Query 241 GGTGCCGGAGCTCCGACTGCGTGACCACCGGTTCATAGTTCCTCTTG---A----TT--A 291
|||||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 239 GGTGCCGGAGCTCCGATTGCGTGACCACCGGTTCATAGTTCCTCTTGATTATTCCTTCAA 298
Query 292 TTCCAAAAGTTCTCCCAAAATTACCGTCTTTGCTCGAGAGATCGTTGCGGTTGGGAAAGA 351
|||||||| |||||||||||| |||||||| |||||||| |||||||||| |||||||||
Sbjct 299 TTCCAAAACTTCTCCCAAAATCACCGTCTTCGCTCGAGAAATCGTTGCGGGTGGGAAAGA 358
Query 352 GGAGCAAGCAATGCCGTATTTATTGTATTTGCAAGGTGGTCCAGGATTTGAAGGTCCAAG 411
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 GGAACAAGCAATGCCGTATTTATTGTATTTACAAGGTGGTCCAGGATTTGAAGGTCCAAG 418
Query 412 GCCTAGTGAAGCTAGTGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGAGTGGTCTTACT 471
|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 419 GCCTAGTGAAGCTAGTGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGCGTTATCCTACT 478
Query 472 CGATCAACGAGGAACAGGCTTGTCCACTCCTTTAACATGTTCCTCTATGCTTCAATTCAA 531
|||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 479 TGATCAAAGAGGAACAGGCTTGTCAACTCCTTTAACATCTTCCTCTATGCTTCAATTCAA 538
Query 532 ATCAGCAAAGGAATTAGCTGATTATTTGGTTCACTTTCGAGCTGATAATATAGTTAAAGA 591
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 ATCAGCAAAGGATTTAGCTGATTATTTGGTTCACTTTCGAGCTGATAATATAGTTAAGGA 598
Query 592 TGCTGAGTTTATTAGAGTTCGTCTTGTTCCTAAGGCTGATCCTTGGACAATTTTGGGTCA 651
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 599 TGCTGAGTTTATTAGAGTTCGTCTTGTTCCTAATGCTGATCCGTGGACAATTTTGGGTCA 658
Query 652 GAGTTTCGGTGGCTTTTGTGCACTTACATATCTGAGTTTTGCACCCGAAGGACTCAAACA 711
|||||| ||||||||||| |||||||||||| |||| ||||| || |||||||| |||||
Sbjct 659 GAGTTTTGGTGGCTTTTGCGCACTTACATATTTGAGCTTTGCGCCAGAAGGACTTAAACA 718
Query 712 AGTGCTAATAACTGGAGGAATTCCACCAATTGGTAAAGCATGTACAGCAGATGATGTATA 771
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||
Sbjct 719 AGTGCTAATAACTGGAGGAATCCCACCAATTGGCAAAACATGTACAGCAGATGATGTGTA 778
Query 772 TGAAGCCGGTTTTGAACAAGTTGCTCGCCAAAATGAAAAATACTACAAGAGATTCCCTCA 831
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 779 TGAAGCCGGTTTTGAACAAGTTGCTCGCCAAAACGAGAAATACTACAAGAGATTCCCTGA 838
Query 832 AGACATTGAGATTGTTCGTGAACTCGTAAATTACTTGGCTGAATCTGAAGGTGGCGGGGT 891
|||||||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||
Sbjct 839 AGACATTGAGATTGTTCGCGAAATAGTAAAATACTTGGTTGAATCTGAAGGTGGCGGGGT 898
Query 892 ACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGG 951
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 ACCTCTTCCATCAGGAGGCATTCTCACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGG 958
Query 952 TTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATGTTGGAGAGAGTATGGGATCC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATGTTGGAGAGAGTATGGGATCC 1018
Query 1012 TATTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCTTTTGAGAG 1071
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 TATTTTAGTTACTGGAGCTCCAAAGCGTATTAGTCAGTTCTTCTTAAACGCTTTTGAGAG 1078
Query 1072 TTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGA 1138
Query 1132 GGGTGCTTCATCAGGATGGTCTGCTCATAGATTACGGGATAAATATGAGTACAAATTCGA 1191
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 GGGTGCTTCATCAGGATGGTCTGCTCATAGATTACGAGATAAATATGAGTACAAATTCGA 1198
Query 1192 CGCAATGAAGGCAGTCAAAGAAAGTCAGCCTGTACTCTTCACAGGAGAGATGATATTTCC 1251
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1199 CGCAATGAAGGCAATCAAAGAAAGTCAGCCTGTACTTTTCACAGGAGAGATGATATTTCC 1258
Query 1252 ATGGATGTTTGATGAAATTCATGCCTTGAAGCCATTTAAAGCTGCCGCCGATCTTTTGGC 1311
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1259 ATGGATGTTTGATGAGATTCATGCCTTGAAGCCATTTAAAGCTGTCGCCGATCTTTTGGC 1318
Query 1312 CAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGGTGCC 1371
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1319 CAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTACATAATAACAAGGTGCC 1378
Query 1372 TGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAGCTGGTGACGGAAAC 1431
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1379 TGTTGCTGCAGCGGTATACTACGAAGATATGTATGTAAACTTCAAGCTAGTGACAGAAAC 1438
Query 1432 AGCTTCTCATATATCGGGTATCAGACTTTGGGTAACGAATGAGTTTATGCATTCGGGTCT 1491
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1439 AGCTTCTCAGATTTCGGGTATCAGGCTTTGGGTAACGAATGAGTTTATGCATTCGGGTCT 1498
Query 1492 TCGTGATGCTGGAAGACAAATTATTGATCATTTGTTGGGAATGATCAATGGGAAAAAGCC 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TCGTGATGCTGGAAGACAAATTATTGATCATTTGTTGGGAATGATCAATGGGAAAAAGCC 1558
Query 1552 TCTCTTTTGA-TT------CCTTGTACTAGTCAGTA-CTTTGTGACTTGTGGTTTTCTTC 1603
|||||||||| || ||||||||||||| | | |||||||||||||||||||||||
Sbjct 1559 TCTCTTTTGAGTTTTGATTCCTTGTACTAGTC-GAAGCTTTGTGACTTGTGGTTTTCTTC 1617
Query 1604 GTTATACACTTTCTTTGAGAATTAAATGAGTAAAAAAGAAAGAGAATGAATAAAAGAAA- 1662
|| ||| ||| ||||||||||||| |||||||||| |||||||||| |||||| ||||
Sbjct 1618 TTTGTAC-CTT-CTTTGAGAATTAAGTGAGTAAAAA-GAAAGAGAATAAATAAA-GAAAA 1673
Query 1663 GTCTTTCAAGTTTTGACTTTCCTTTCC 1689
|||||||||||||||| ||||||||||
Sbjct 1674 GTCTTTCAAGTTTTGAGTTTCCTTTCC 1700
> Ahg928093 jgi|Araly1|928093|scaffold_300550.1
Length=700
Score = 60.2 bits (32), Expect = 5e-08
Identities = 35/36 (97%), Gaps = 1/36 (3%)
Strand=Plus/Plus
Query 427 TGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGAGT 462
|||||||||||||||||||||||||||||||| |||
Sbjct 575 TGGATGGATTCAAAGAGCTTGTGAAGAGTTTC-AGT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5