BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61540.1 Length=1689 Score E Sequences producing significant alignments: (Bits) Value Ahg486640 jgi|Araly1|486640|fgenesh2_kg.5__2632__AT3G61540.1 2551 0.0 Ahg928093 jgi|Araly1|928093|scaffold_300550.1 60.2 5e-08 > Ahg486640 jgi|Araly1|486640|fgenesh2_kg.5__2632__AT3G61540.1 Length=1700 Score = 2551 bits (1381), Expect = 0.0 Identities = 1603/1707 (94%), Gaps = 27/1707 (2%) Strand=Plus/Plus Query 3 GAATAAAAACGATGTTGGCGACTCACGCGCTGGTGACTCCGATTCCAAAGTTGACTGCTT 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAATAAAAACGATGTTGGCGACTCACGCGCTGGTGACTCCGATTCCAAAGTTGACTGCTT 60 Query 63 TCGTACTCTCTCTATCTACTACTCCATC-AAGATTGTCTGGTTCTGTTCCGGGTTTGATT 121 ||||||||||| |||||||||||||||| || || ||||||||| ||||||||||| || Sbjct 61 TCGTACTCTCTTTATCTACTACTCCATCGAA-ATCGTCTGGTTCAGTTCCGGGTTTTATC 119 Query 122 GATTTCTACCGTCGCCGGAGATTTTGTCGTGTAATCACCTCCATGGCTGAAGCGGGATCG 181 ||||||| ||||||||||||||||||||||||||||| |||||||||| ||| | |||| Sbjct 120 AATTTCTATCGTCGCCGGAGATTTTGTCGTGTAATCACTTCCATGGCTGGAGCAGAATCG 179 Query 182 GTTTACGTCGATG-TAGCTGGGGAATCGAAGTCGGAGCATGTTACTGGGAAGTGGTTTTC 240 || | |||||| | ||||||||||||||| |||||||||||| || |||||||||||||| Sbjct 180 GTCTCCGTCGA-GATAGCTGGGGAATCGAGGTCGGAGCATGTCACAGGGAAGTGGTTTTC 238 Query 241 GGTGCCGGAGCTCCGACTGCGTGACCACCGGTTCATAGTTCCTCTTG---A----TT--A 291 |||||||||||||||| |||||||||||||||||||||||||||||| | || | Sbjct 239 GGTGCCGGAGCTCCGATTGCGTGACCACCGGTTCATAGTTCCTCTTGATTATTCCTTCAA 298 Query 292 TTCCAAAAGTTCTCCCAAAATTACCGTCTTTGCTCGAGAGATCGTTGCGGTTGGGAAAGA 351 |||||||| |||||||||||| |||||||| |||||||| |||||||||| ||||||||| Sbjct 299 TTCCAAAACTTCTCCCAAAATCACCGTCTTCGCTCGAGAAATCGTTGCGGGTGGGAAAGA 358 Query 352 GGAGCAAGCAATGCCGTATTTATTGTATTTGCAAGGTGGTCCAGGATTTGAAGGTCCAAG 411 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 359 GGAACAAGCAATGCCGTATTTATTGTATTTACAAGGTGGTCCAGGATTTGAAGGTCCAAG 418 Query 412 GCCTAGTGAAGCTAGTGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGAGTGGTCTTACT 471 |||||||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 419 GCCTAGTGAAGCTAGTGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGCGTTATCCTACT 478 Query 472 CGATCAACGAGGAACAGGCTTGTCCACTCCTTTAACATGTTCCTCTATGCTTCAATTCAA 531 |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 479 TGATCAAAGAGGAACAGGCTTGTCAACTCCTTTAACATCTTCCTCTATGCTTCAATTCAA 538 Query 532 ATCAGCAAAGGAATTAGCTGATTATTTGGTTCACTTTCGAGCTGATAATATAGTTAAAGA 591 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 539 ATCAGCAAAGGATTTAGCTGATTATTTGGTTCACTTTCGAGCTGATAATATAGTTAAGGA 598 Query 592 TGCTGAGTTTATTAGAGTTCGTCTTGTTCCTAAGGCTGATCCTTGGACAATTTTGGGTCA 651 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 599 TGCTGAGTTTATTAGAGTTCGTCTTGTTCCTAATGCTGATCCGTGGACAATTTTGGGTCA 658 Query 652 GAGTTTCGGTGGCTTTTGTGCACTTACATATCTGAGTTTTGCACCCGAAGGACTCAAACA 711 |||||| ||||||||||| |||||||||||| |||| ||||| || |||||||| ||||| Sbjct 659 GAGTTTTGGTGGCTTTTGCGCACTTACATATTTGAGCTTTGCGCCAGAAGGACTTAAACA 718 Query 712 AGTGCTAATAACTGGAGGAATTCCACCAATTGGTAAAGCATGTACAGCAGATGATGTATA 771 ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || Sbjct 719 AGTGCTAATAACTGGAGGAATCCCACCAATTGGCAAAACATGTACAGCAGATGATGTGTA 778 Query 772 TGAAGCCGGTTTTGAACAAGTTGCTCGCCAAAATGAAAAATACTACAAGAGATTCCCTCA 831 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | Sbjct 779 TGAAGCCGGTTTTGAACAAGTTGCTCGCCAAAACGAGAAATACTACAAGAGATTCCCTGA 838 Query 832 AGACATTGAGATTGTTCGTGAACTCGTAAATTACTTGGCTGAATCTGAAGGTGGCGGGGT 891 |||||||||||||||||| ||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 839 AGACATTGAGATTGTTCGCGAAATAGTAAAATACTTGGTTGAATCTGAAGGTGGCGGGGT 898 Query 892 ACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGG 951 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 899 ACCTCTTCCATCAGGAGGCATTCTCACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGG 958 Query 952 TTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATGTTGGAGAGAGTATGGGATCC 1011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATGTTGGAGAGAGTATGGGATCC 1018 Query 1012 TATTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCTTTTGAGAG 1071 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1019 TATTTTAGTTACTGGAGCTCCAAAGCGTATTAGTCAGTTCTTCTTAAACGCTTTTGAGAG 1078 Query 1072 TTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGA 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACGAGGCCATATACTGTGA 1138 Query 1132 GGGTGCTTCATCAGGATGGTCTGCTCATAGATTACGGGATAAATATGAGTACAAATTCGA 1191 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1139 GGGTGCTTCATCAGGATGGTCTGCTCATAGATTACGAGATAAATATGAGTACAAATTCGA 1198 Query 1192 CGCAATGAAGGCAGTCAAAGAAAGTCAGCCTGTACTCTTCACAGGAGAGATGATATTTCC 1251 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1199 CGCAATGAAGGCAATCAAAGAAAGTCAGCCTGTACTTTTCACAGGAGAGATGATATTTCC 1258 Query 1252 ATGGATGTTTGATGAAATTCATGCCTTGAAGCCATTTAAAGCTGCCGCCGATCTTTTGGC 1311 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1259 ATGGATGTTTGATGAGATTCATGCCTTGAAGCCATTTAAAGCTGTCGCCGATCTTTTGGC 1318 Query 1312 CAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTGCAGAATAACAAGGTGCC 1371 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1319 CAAGAAAGAGGATTGGCCTCCATTATATGATGTTCCTAGATTACATAATAACAAGGTGCC 1378 Query 1372 TGTTGCTGCAGCGGTTTACTACGAAGATATGTATGTAAACTTCAAGCTGGTGACGGAAAC 1431 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1379 TGTTGCTGCAGCGGTATACTACGAAGATATGTATGTAAACTTCAAGCTAGTGACAGAAAC 1438 Query 1432 AGCTTCTCATATATCGGGTATCAGACTTTGGGTAACGAATGAGTTTATGCATTCGGGTCT 1491 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1439 AGCTTCTCAGATTTCGGGTATCAGGCTTTGGGTAACGAATGAGTTTATGCATTCGGGTCT 1498 Query 1492 TCGTGATGCTGGAAGACAAATTATTGATCATTTGTTGGGAATGATCAATGGGAAAAAGCC 1551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 TCGTGATGCTGGAAGACAAATTATTGATCATTTGTTGGGAATGATCAATGGGAAAAAGCC 1558 Query 1552 TCTCTTTTGA-TT------CCTTGTACTAGTCAGTA-CTTTGTGACTTGTGGTTTTCTTC 1603 |||||||||| || ||||||||||||| | | ||||||||||||||||||||||| Sbjct 1559 TCTCTTTTGAGTTTTGATTCCTTGTACTAGTC-GAAGCTTTGTGACTTGTGGTTTTCTTC 1617 Query 1604 GTTATACACTTTCTTTGAGAATTAAATGAGTAAAAAAGAAAGAGAATGAATAAAAGAAA- 1662 || ||| ||| ||||||||||||| |||||||||| |||||||||| |||||| |||| Sbjct 1618 TTTGTAC-CTT-CTTTGAGAATTAAGTGAGTAAAAA-GAAAGAGAATAAATAAA-GAAAA 1673 Query 1663 GTCTTTCAAGTTTTGACTTTCCTTTCC 1689 |||||||||||||||| |||||||||| Sbjct 1674 GTCTTTCAAGTTTTGAGTTTCCTTTCC 1700 > Ahg928093 jgi|Araly1|928093|scaffold_300550.1 Length=700 Score = 60.2 bits (32), Expect = 5e-08 Identities = 35/36 (97%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 427 TGGATGGATTCAAAGAGCTTGTGAAGAGTTTCGAGT 462 |||||||||||||||||||||||||||||||| ||| Sbjct 575 TGGATGGATTCAAAGAGCTTGTGAAGAGTTTC-AGT 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63344077435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5