BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61550.1
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939208 jgi|Araly1|939208|scaffold_503399.1 1086 0.0
> Ahg939208 jgi|Araly1|939208|scaffold_503399.1
Length=683
Score = 1086 bits (588), Expect = 0.0
Identities = 654/686 (95%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 22 TAACCTCTTTCTTCACCATCAAATGTCAACCGCCACCCTCGTCGTCTTCCCTCCTCCACC 81
|||||||||||||||||||||||||||||||| | | | || |||||| |||||||| ||
Sbjct 1 TAACCTCTTTCTTCACCATCAAATGTCAACCG-C-CGC-CGCCGTCTTTCCTCCTCCGCC 57
Query 82 TCCTGTCCCTATCCCTACCTATATAACTAGCCTCGGCCTTGGCTACTCCATAGCCATAGC 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 58 TCCTGTCCCTATCCCTACCTATATAACTAGCCTCGGCCTTGGCTACTCCATAGCTATAGC 117
Query 142 TCTAGGTTTCCTCGTTCTTATCTCCACAATCATTCTCTCTTCTTACATCTGTTGCCGCGC 201
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 118 TCTAGGTTTCCTCGTTCTTATCTCCACAATCATCCTCTCTTCTTACATCTGCTGCCGCGC 177
Query 202 CTCACGCCTCCGCTTCTCTGCCTCCGCCGCAAACGCAAACGCAAACGCATCGTTTAGCGA 261
||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||| ||
Sbjct 178 CTCACGCCTTCGCTTCTCTGCCTCCGCCACAACCGCTAACGCAAACGCATCGTTTAGAGA 237
Query 262 CCGTGGCGTTATCGTCCCAAGAATCATATTCGTAGCTGAAGACGACGATCTTGAGTCTGG 321
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCGTAGCGTAATCGTCCCAAGAATCATATTCGTAGCTGAAGACGACGATCTTGAGTCTGG 297
Query 322 AAACGTCGTCGTTGGAGGTCTTGATCATTCAGTCATCAACTCTTACCCTAAATTCCATTT 381
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 298 AAACGTCGTCGTTGGAGGACTTGATCATTCAATCATCAACTCTTACCCTAAATTCCATTT 357
Query 382 CACTAAAGATATCACCGCCGTAGTAAACGGTGATGGGTTTCACGACGGAGAAGGAAGAGA 441
||||||||||||||||||||| || |||| ||||| ||||||||||||||| || ||||
Sbjct 358 CACTAAAGATATCACCGCCGTCGTCGACGGAGATGGATTTCACGACGGAGAAAGAGGAGA 417
Query 442 GACGACGTGTTCGATCTGTTTATGTGAGTACATGGAAGAAGAGATGTTAAGGATGATGCC 501
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 418 TACGACGTGTTCCATCTGTCTATGTGAGTATATGGAAGAAGAGATGTTAAGGATGATGCC 477
Query 502 TGAGTGTAAACACTACTTCCATGTTTATTGTCTTGACGCTTGGCTTAAGCTCAATGGTTC 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGAGTGTAAACACTACTTCCATGTTTATTGTCTTGACGCTTGGCTTAAGCTCAATGGTTC 537
Query 562 TTGTCCCGTTTGTCGGAATTCTCCACTTCCGACGCCGCAATCTACGCCGCAGTCAACTCC 621
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGTCCCGTTTGCCGGAATTCTCCACTTCCGACGCCGCAATCTACGCCGCAGTCAACTCC 597
Query 622 TTTGTCGGAAGTTGTGCCGTTGTCTCAATACGCCGCCGATCGGAGGAGATCCAGAAGATA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTGTCGGAAGTTGTGCCGTTGTCTCAATACGCCGCCGATCGGAGGAGATCCAGAAGATA 657
Query 682 AAACATTTCtttttttt-GCTCCGTG 706
||||||||||||||||| ||||||||
Sbjct 658 AAACATTTCTTTTTTTTTGCTCCGTG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5