BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61570.1
Length=2527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939210 jgi|Araly1|939210|scaffold_503401.1 3417 0.0
Ahg483764 jgi|Araly1|483764|fgenesh2_kg.4__2824__AT2G46180.1 1574 0.0
Ahg939227 jgi|Araly1|939227|scaffold_503418.1 222 9e-57
> Ahg939210 jgi|Araly1|939210|scaffold_503401.1
Length=2174
Score = 3417 bits (1850), Expect = 0.0
Identities = 2066/2170 (95%), Gaps = 16/2170 (1%)
Strand=Plus/Plus
Query 187 AGAGCTATGTGGAGTTCAATTGAGAATATGAAGGCGAACTTGCACAAGATCGTTCTCGAT 246
||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct 16 AGAGCTATGTGGAGTTCAATTGAGAATTTCAAGGAGAACTTGCACAAGATCGCGCTCGAT 75
Query 247 GTGCATGAAGACGACGAAGAAGAAGACGATCTCCACAA-ATATGGTTCCGCCAATGGCGT 305
|||||||||||||| || || |||||||||||||| || || |||| ||||||||||||
Sbjct 76 GTGCATGAAGACGATGACGAGGAAGACGATCTCCA-AAGCTACGGTTACGCCAATGGCGT 134
Query 306 ATC-GAACTCTGATCGGAGGAATTCCAGTGGTTTTAGGTCCGTTTCGAGGTATTCGATCT 364
||| ||| |||||||||||||| ||| ||||||| |||||| || |||| ||||||
Sbjct 135 ATCGGAA-TCTGATCGGAGGAACTCCGGTGGTTTCAGGTCC---TCCAGGTCCGCGATCT 190
Query 365 CCAATGGAATTGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAGA 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CCAATGGAATCGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAGA 250
Query 425 AGCTTCAGGAATCAGAATCAGATATCAAAGCCTTATCTGTAAATTATGCAGCTCTCTTAA 484
||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 251 AGCTTCAGGAATCCGAATCAGATATCAAAGCCTTGTCAGTGAATTATGCAGCTCTATTAA 310
Query 485 GAGAGAAAGAGGATCAGATTTCCAGATTGAATCAGGAGAATGGCTCTTTGAAACAAAATC 544
|||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||| |||
Sbjct 311 GAGAGAAAGAGGATCAGATTTCAAGATTGAACCAGGACAATGGTTCATTGAAACAATATC 370
Query 545 TGACCTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGACATTTCCAGGGGATCAAACA 604
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGACGTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGACATTTCCAGGGGATCAAACA 430
Query 605 ACTATGCTATCAAGGGAAACAATGATCAGTCACCC---AATAGGCTACACAAATCTGTTT 661
|| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 431 ACCACGCTATCAAGGGAAACAATGATCAGTCACCCAATAATAGGCTACACAAATCTGTGT 490
Query 662 CGCATTTAAAAAGTCCAAACCATATGTCCAATGGAAAAGGGAAGGATACCGATTCGTTTA 721
| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 491 CATATTTAAAAAGTCCAAATCATATGTCAAATGGAAAAGGGAAGGATACCGATTCGTATA 550
Query 722 TAAAGGAAAAGGACCTTGCAGATATGCTAGAAGATAGAACCAAATCAATGGCAGCTGTTC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TAAAGGAAAAGGACCTTGCAGATATGCTAGAAGATAGAACCAAATCAATGGCAGCTGTTC 610
Query 782 AAGCTACGGAGCTTGCCAAAGAGCGTGAAAAATTAAGAGATTTTCAGCTATCTCTACAGG 841
|||||| ||| |||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 611 AAGCTATGGAACTTGCCAAAGAGCGTGAAAAATTAAGAGATCTGCAGCTATCTCTGCAGG 670
Query 842 AGGAGCGGAAAAGGAGTGAATCTTTCAAGGAAGAACTCGAGTCTATGAGGTTAGATAAAA 901
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 671 AGGAGCGGAAAAGGAGTGAATCTTTCAAGGAGGAACTCGAGTCAATGAGGTTAGATAAAA 730
Query 902 ACAAAACCTCCATGGAGATTAGCAAAATGCGTAGTGAATTGGATGCAAAATTACTTGAAA 961
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ACAAAACCTTCATGGAAATTAGCAAAATGCGTAGTGAATTGGATGCAAAATTACTTGAAA 790
Query 962 TCAAACACCTGCAGATGAAGTTGACTGGTCAGGAAAGCCATGCTATTGGACCTGGCATGG 1021
|||||||| ||||||||||||||| ||||| ||||||||||||||||||| || |||||
Sbjct 791 TCAAACACTTGCAGATGAAGTTGAATGGTCGGGAAAGCCATGCTATTGGAAATGCCATGG 850
Query 1022 AACATCTGAAAGAAGTTAACAAAGCTCTGGAGAAGGAAAACAACGAGCTTAAGTTGAAAC 1081
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 851 AACATCTAAAAGAAGTTAACAAAGCTCTGGAGAATGAAAACAACGAGCTTAAGTTGAAAC 910
Query 1082 GAAGTGAGCTAGAAGCTGCTTTAGAAGAAAGCAGGAAGCTAACCAATAGCAAAGTCTTCC 1141
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 911 GAAGTGAGCTAGAAGCTGCTTTAGAAGAAAGCAGGAAGCCAACCAGTAGCAAAGTCTTCC 970
Query 1142 CGGACGCCACAGAGTCTCTGACTAGGCATCCTAGTACTTTGGACAAGGAGAAGCCTGAAA 1201
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CGGACGCCACAGAGACTCTGACTAGGCATCCTAGTACTTTGGACAAGGAGAAGCCTGAAA 1030
Query 1202 GCTTTCCTGGAAAAGAAGAAATGGAGCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GCTTTCCTGGAAAAGAAGAAATGGAGCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGG 1090
Query 1262 AAACACAAAGAGAAAGAGATAAGGCACGGCAAGAATTAAAACGACTCAAACAGCACTTGC 1321
|||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1091 AAACACGACGAGAAAGAGATAAGGCACGGCAAGAATTAAAACGGCTCAAACAGCACTTGC 1150
Query 1322 TAGAAAAGGAAACAGAGGAGTCTGAGAAAATGGATGAAGATAGCCGACTGATTGAAGAAC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TAGAAAAGGAAACAGAGGAGTCTGAGAAAATGGATGAAGATAGCCGACTGATTGAAGAAC 1210
Query 1382 TCCGCCAGACTAATGAATATCAAAGGTCTCAGATATCACACTTGGAGAAAAGTCTTAAGC 1441
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1211 TCCGCCAGACTAATGAATATCAAAGGTCTCAGATATCACAGTTGGAGAAAAGTCTTAAGC 1270
Query 1442 AGGCCATCTCGAATCAGGAGGATAACAGATTGAGCAATGACAACCAAATCCGAAAATTAA 1501
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1271 AGGCCATCGCGAATCAGGAGGATAACAGATTGAGCAATGACAACCAAATCCGAAAGTTAA 1330
Query 1502 AGGACACAGTTGATGACCTAAATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCA 1561
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AGGAGACAGTTGAAGACCTAAATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCA 1390
Query 1562 AGAATGTTGAACTTTTAAATCTTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAG 1621
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 AGAATGTTGAAATTTTAAATCTTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAG 1450
Query 1622 CTAAGGAGCATTTTGAACGAGAGCTTGCGATGGCTAAAGACGAGTTGATGAAGCTTTCTG 1681
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1451 CTAAGGAGCATTTTGAACGAGAGCTCGTGATGGCTAAAGACGAGTTGATGAAGCTTTCTG 1510
Query 1682 CTCGTTTGAAAGATTCTGATGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCA 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CTCGTTTGAAAGATTCTGATGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCA 1570
Query 1742 CATCCAAATTATTGCATGCGGAAAAAGTTGCAGCGGAATGGAAAAACAGAGTAACCAAGG 1801
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1571 CATCCAAATTGTTGCATGCGGAAAAAGTTGCAGCGGAATGGAAAAACAGAGTAAGCAAGG 1630
Query 1802 TTGAAGAAGACAATGCAAAAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 TTGAAGAAGACAATGCAAAAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATA 1690
Query 1862 GAATGTCAATGGAGTCTGATTATCTTGTTGATAGGCGAATCGTTATTAAATTGCTGGTTA 1921
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1691 GAATGTCAATGGAGTCGGATTATCTTGTTGATAGGCGAATCGTTATCAAATTGCTGGTGA 1750
Query 1922 CATACTTCCAGAAGAATCATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGAT 1981
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 CATATTTCCAGAAGAATCATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGAT 1810
Query 1982 TTTCAGAGGAAGATAAAGAGCGGATTGGAGCGGCAAAACAAGGAGGAGGTAAAGGAGTTG 2041
| ||||||||||||||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 1811 TCTCAGAGGAAGATAAAGAGCGGATTGGAGCGGCA---CAAGGTGG---TAAAGGTGTTG 1864
Query 2042 TTAGAGGCGTATTGGGCTTTCCGGGCCGCTTTGTCGGAGGAATTTTGGGTGGGAAATCTG 2101
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1865 TTAGAGGCGTATTGGGCTTTCCGGGTCGCTTTGTCGGCGGAATTTTGGGTGGGAAATCTG 1924
Query 2102 CAGAGTTACATGCTAATGCAGCTTCTGATAACCAGTCTTTTGCGGATCTATGGGTCGATT 2161
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1925 CAGAGTCACATGCTAATGCGGCTTCTGATAACCAGTCTTTTGCGGATCTATGGGTTGATT 1984
Query 2162 TCTTACTCAaagacgcggaagagcgagagagaagagaagcagaagaagcagcagcgagta 2221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1985 TCTTACTCAAAGACGCGGAAGAGCGAGAGAGAAGAGAAGCAGAAGAAGCAGCAGCGACTA 2044
Query 2222 aagccaagcaagattcggagagGACGAGACAAGAGGCGGCTTTGCATGATTCAGAGTTCT 2281
||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 2045 AAGCCAAGCAAGATTCGGAGAGGACAAGACAAGATGCGGCTTTGTATGATTCAGAGTTCT 2104
Query 2282 CTACTGTGCCTCTCAGATCATCTGAGAGTAATCAACGACTCTCGAGATAACTTCCTTAAA 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 CTACTGTGCCTCTCAGATCATCTGAGAGTAATCAACGACTCTCGAGATAACTTCCTTAAA 2164
Query 2342 AGATGGTACA 2351
||||||||||
Sbjct 2165 AGATGGTACA 2174
> Ahg483764 jgi|Araly1|483764|fgenesh2_kg.4__2824__AT2G46180.1
Length=2386
Score = 1574 bits (852), Expect = 0.0
Identities = 1700/2096 (81%), Gaps = 111/2096 (5%)
Strand=Plus/Plus
Query 188 GAGCTATGTGGAGTTCAATTGAGAATATGAAGGCGAACTTGCACAAGATCGTTCTCGATG 247
|||||||||||||||| ||| ||| |||||| ||| ||| ||||||||| | |||||
Sbjct 89 GAGCTATGTGGAGTTCGGTTGCCAATTTGAAGGAGAATTTGAACAAGATCGCCCACGATG 148
Query 248 TGCATGAAGACGACGAAGA--A-GAAGACGATCTCCA-CAAATATGGTTCCGCCAATGGC 303
|||| || ||||||||||| | || || ||||| || || ||||| ||| ||||||||
Sbjct 149 TGCACGACGACGACGAAGATGATGATGAAGATCT-CACCATTTATGGGTCCACCAATGGC 207
Query 304 GTATCGAACTCTGATCGGAGGAATTCCAGTGGTTTTAGGTCCGTTTCGAGGTATTCGATC 363
| | | |||||||||||||||| | ||| ||||||| |||||||| | | ||
Sbjct 208 G----G--CGCTGATCGGAGGAATTCTAATGGATTTAGGT---ATTCGAGGTCTCCAATG 258
Query 364 TCCAATGGAATTGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAG 423
||||||| | ||||||||| | |||||||||||||| | ||||| || ||||| ||
Sbjct 259 GCCAATGGTGTCGAATCGCCTATTAATCATGAGATTGAGAGATATAAAGCGGAGATCAAC 318
Query 424 AAGCTTCAGGAATCAGAATCAGATATCAAAGCCT-TATCTGTAAATTATGCAGCTCTCTT 482
|||||||| ||||||||| |||| ||||||| || | || ||||||||||| ||||| ||
Sbjct 319 AAGCTTCAAGAATCAGAAGCAGAAATCAAAG-CTCTCTCAGTAAATTATGCGGCTCTTTT 377
Query 483 AAGAGAGAAAGAGGATCAGATTTCCAGATTGAATCAGGAGAATGGCTCTTTGAAACAAAA 542
|| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 378 AAAAGAAAAAGAGGATCAGATTTCCAGATTGAACCAGGAGAATGGCTCGTTGAAACAGAA 437
Query 543 TCTGACCTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGA-CATTTCCAGGGGATCAA 601
| |||| ||||||| |||||||||||||||| |||||| || | ||||||||| |||||
Sbjct 438 TTTGACTTCAACTAATGCCGCTCTTAAAGAGTCTAGAATGGATC-TTTCCAGGGCATCAA 496
Query 602 ACAACT-ATGCTATCAAGGGAAACAATGATCAGTCACCCAATAGGCT-ACACAAATCTGT 659
|||| | ||||||||||||||||| |||||| |||||||| ||| | ||| ||||||
Sbjct 497 ACAA-TAATGCTATCAAGGGAAACGGTGATCATTCACCCAACAGG-TCACAAAAATCTCC 554
Query 660 TTCGCATTTAAAAAGTCC-AAACCATATGTCCAAT-G----G---------AAAA-GGGA 703
| ||| ||||| || |||||| |||| |||| | | |||| ||||
Sbjct 555 GACTAATTGGAAAAG-CCGAAACCAAATGTACAATGGCATTGCCTCAAAACAAAACGGGA 613
Query 704 -AG-G-AT-A--CCGATTCGTTTATAAAGGAAAAGGACCTTGCAGATATGCTAGAAGATA 757
|| | || | |||| ||| || ||| |||||||| ||||||||||||| ||||| |
Sbjct 614 CAGAGAATGATTCCGAGTCGCATAAAAAAGAAAAGGAGTTTGCAGATATGCTTGAAGAGA 673
Query 758 GAACCAAATCAATGGCAGCTGTTCAAGCTACG-GAGCTTGCCAAAGAGCGTGAAAAATTA 816
|||||| ||||||||| ||| ||| |||| | || |||| |||||||| |||||| |
Sbjct 674 GAACCAGGTCAATGGCATCTGCTCAGGCTA-GAGAACTTGAGAAAGAGCGAGAAAAA-TC 731
Query 817 AG-AGATTTTCAGCTATCTCTACAGGAGGAGCGGAAA-AGGAGTGAATCTTTCAAGGAAG 874
|| | || | ||| | || |||||||||||||||||| | | ||| ||||||||||| |
Sbjct 732 AGCAAATCTGCAGATTTCACTACAGGAGGAGCGGAAACA-AAATGACTCTTTCAAGGAGG 790
Query 875 AACTCGAGTCTATGAGGTTAGATAA-AAACAAAAC-CTCCATGGAGATTAGCAAAATGCG 932
||||| ||| | ||||||||||||| || ||||| || |||||||| || |||| | ||
Sbjct 791 AACTCCAGTTTCTGAGGTTAGATAAGGAA-AAAACACT-CATGGAGAGTAACAAAGTACG 848
Query 933 T-AGTGAATTGGATGCAAAATT-ACTTGAAATCAAACACCTGCAGATGAAGTTGACTGGT 990
| | |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||
Sbjct 849 TCA-TGAATTGGATGCAAAATTGGC-TGAAATCAAACAACTGCAGATGAAGTTGAATGGT 906
Query 991 CAGGAAAGCCATGC-TATTGGACCTGGCATGGAACATCTGAAAGAAGTTAACAAAGCTCT 1049
|| || || || | ||||| | ||| ||| |||| ||||| ||||||||||||||
Sbjct 907 --GGGGAG-CA-GCATGTTGGAATTTCCATAGAAAATCTAAAAGAGGTTAACAAAGCTCT 962
Query 1050 GGAGAAGGAAAACAACGAGCTTAAGTTGAAACGAAGTGAGCTAGAAGCTGCTTTAGAAGA 1109
|||||| ||||| || ||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 963 GGAGAAAGAAAATAATGAGCTTAAGTTGAAACGAAGTGAATTAGAGGCTGCTTTGGAAGC 1022
Query 1110 AAG-CAGGAAGCT-AACCAA-TAGCAAAGTCTTCCCGGACGCCACAGAGTCTCTGACTAG 1166
||| || | || | || ||| ||| ||| ||||||| || | |||||| |||| | |||
Sbjct 1023 AAGCCA-G-AGGTCAA-CAAGTAGGAAACTCTTCCCAGAGGGAACAGAGGCTCTTAGTAG 1079
Query 1167 GCATCCTAGTACTTTGGACAAGGAGAAGCCTGAAAGCTTTCCTGGAAAAGAAGAAATGGA 1226
|||| ||||| |||||||||||| ||||| |||||||| ||||| |||||||| ||||
Sbjct 1080 ACATCGTAGTAGTTTGGACAAGGAAAAGCCCGAAAGCTTCCCTGGGAAAGAAGATTTGGA 1139
Query 1227 GCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGGAAACACAAAGAG-AAAGAGATAAGG 1285
| |||| |||||||| |||||| ||| ||| ||||| ||| ||||| |||| |||||||
Sbjct 1140 GAAATCTTTGCAGAGGCTGGAAAGGGAGTTGGAGGAAGCACGAAGAGAAAAG-GATAAGG 1198
Query 1286 CACGGCAAGAATTAAAACGACTCAAACAGCACTTGCTAGAAAAGGAAACAGAGGAGTCTG 1345
||||||||||| ||||||| |||||||| ||| || ||||||||||||| ||||||||||
Sbjct 1199 CACGGCAAGAACTAAAACGGCTCAAACAACACCTGTTAGAAAAGGAAACTGAGGAGTCTG 1258
Query 1346 AGAAAATGGATGAAGATAGCCGACTGATTGAAGAACTCCGCCAGACTAATGAATATCAAA 1405
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| |
Sbjct 1259 AGAAAATGGATGAAGATAGTAGATTGATTGAAGAACTCCGCCAGACGAATGAATATCAGA 1318
Query 1406 GGTCTCAGATA-TCACACTTGGAGAAAAG-TCTTAAGCAGGCCATCTCGAATCAGGAGGA 1463
||||||||||| | | || || ||||| ||||| |||| | || | |||||||||||
Sbjct 1319 GGTCTCAGATACT-AGGTTTAGA-AAAAGCTCTTAGGCAGACAATGGCTAATCAGGAGGA 1376
Query 1464 --TAACAGAT-TGAGCAATGACAACCAAATCCGAAAATTAAAGGACACAGTTGATGACCT 1520
||| || | | ||||| ||| ||||||| || | |||| | | |||| ||| |
Sbjct 1377 AATAA-AG-TCT-AGCAACGACCTTGAAATCCGGAAGTCCAAGGGTATAATTGAAGACTT 1433
Query 1521 AAATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCAAGAATGTTGAACTTTTAAA 1580
||||||||| ||| | ||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 1434 AAATCAAAAGCTTGCGAATTGTTTGAGAACAATAGATTCCAAAAATGTGGAACTTTTAAA 1493
Query 1581 TCTTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAGCTAAGGAGCATTTTGAACG 1640
||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1494 TCTTCAAACTGCTCTTGGCCAGTACTACGCTGAAATTGAAGCTAAGGAACATTTTGAACG 1553
Query 1641 AGAGCTTGC-GATGGCTAAAGACGAGTTGATGAAGCTTTCTGCTCGTTTGAAAGAT-TCT 1698
||||||||| | |||||||||| ||| ||||| || || ||||||||||||||| | |
Sbjct 1554 AGAGCTTGCAG-TGGCTAAAGAAGAGGCAATGAAACTCTCAGCTCGTTTGAAAGATGT-T 1611
Query 1699 GATGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCACATCCAAATTATTGCAT 1758
||||| ||||||||||||||||| ||||||||||| || ||||||| || | |||||
Sbjct 1612 GATGAACGGTTAGAGTCATCAAAGAAAGAAAAGGAGGAAATCACATCGAAGCTGTTGCAC 1671
Query 1759 GCGGAAAA-AGTTGCAGCGGAATGGAAAAACAGAGTAACCAAGGTTGAAGAAGACAATGC 1817
|| ||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1672 GCAGAAAATA-TTGCAGCAGAATGGAAAAACAGAGTAAGCAAGGTTGAAGAAGACAATGC 1730
Query 1818 AAAAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATAGAATGTCAATGGAGTC 1877
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1731 AAAAGTAAGGCGTGTTCTTGAGCAGAGCATGACTAGGCTCAATAGAATGTCAATGGACTC 1790
Query 1878 TGATTATCTTGTTGATAGGCGAATCGTTATTAAATTGCTGGTTACATACTTCCAGAAG-A 1936
|||| ||||||||||||||| || ||||| || || |||||||| |||||||| ||| |
Sbjct 1791 CGATTTTCTTGTTGATAGGCGTATTGTTATCAAGTTACTGGTTACGTACTTCCA-AAGGA 1849
Query 1937 ATCATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGATTTTCAGAGGAAGATA 1996
|||| | || |||||| ||||| || |||||||| ||||| ||||| ||||||||||| |
Sbjct 1850 ATCACAGCAGAGAGGTGTTGGAGCTAATGGTTCGAATGCTTGGATTCTCAGAGGAAGACA 1909
Query 1997 AAGAGCGGATTGGAGCGGCAAAACAAGGAG--G-AGGTAAAGGAGTTGTTAGAGGCGTAT 2053
|| |||| || ||| |||| | ||||||| | ||||||||| ||||||||||| || |
Sbjct 1910 AACAGCGAATAGGATTGGCACAGCAAGGAGCTGCAGGTAAAGGTGTTGTTAGAGGTGTGT 1969
Query 2054 TGGGCTTTCCGGGCCGCTTTGTCGGAGGAATTTT-GG-G-TGG-GAAA-TC-TG---CA- 2103
||||||| ||||| ||||| ||||| || || || || | ||| | | || ||
Sbjct 1970 TGGGCTTCCCGGGTCGCTTAGTCGGTGGCATCTTAGGCGGTGGTGGTGGTGGTGGTACAC 2029
Query 2104 -G-AGT-TACATGCTAATGCAGCTTCTGATAACCAGTCTTTTGCGGATC-TATGGGTCGA 2159
| | | | ||| | ||| || || ||||| |||||||| || || | | ||||||||
Sbjct 2030 CGGATTCT-CATCCAAATATTGCGTCAGATAATCAGTCTTTCGCAGA-CATGTGGGTCGA 2087
Query 2160 TTT-CTTACTCAaagacgcggaagagcgagagagaagagaagcagaagaagcagca 2214
||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2088 TTTTCT-ACTTAAAGACGCGGAAGAGCGAGAGAGAAGAGAAGCAGAAGATGCAGCA 2142
> Ahg939227 jgi|Araly1|939227|scaffold_503418.1
Length=1031
Score = 222 bits (120), Expect = 9e-57
Identities = 144/156 (92%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 848 GGAAAAGGAGTGAATCTTTCAAGGAAGAACTCGAGTCTATGAGGTTAGATAAAAACAAAA 907
|||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||| ||
Sbjct 419 GGAAAAGGAGTGAATCTTTCGAGGAGGAACTCGAGTCTCTGAGGTTAGATAAGAACAGAA 478
Query 908 CCTCCATGGAGATTAGCAAAATGCGTAGTGAATTGGATGCAAAATTACTTGAAATCAAAC 967
|||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CCTCCATGGAAATTAGCCAAATGCGTAGTGAATTGGATGCAAAATTACTTGAATTCAAAC 538
Query 968 ACCTGCAGATGAAGTTGACTGGTCAGGAAAGCCATG 1003
|| ||||||||||||||| ||||| ||| |||||||
Sbjct 539 ACTTGCAGATGAAGTTGAATGGTCGGGACAGCCATG 574
Score = 89.8 bits (48), Expect = 9e-17
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 750 AGAAGATAGAACCAAATCAATGGCAGCTGTTCAAGCTACGGAGCTTGCCAAAGA 803
||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 AGAAGATAGAAGCAAATCAATGGCAGCTGTTCAAGCTACGGAGCTTGCAAAAGA 409
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 568 AAAGAGGCTAGAACCGACATTTCCAGGGGATCA 600
|||||||||||||||||||||||||||||||||
Sbjct 301 AAAGAGGCTAGAACCGACATTTCCAGGGGATCA 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95263702745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5