BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61571.1

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939211 jgi|Araly1|939211|scaffold_503402.1                        159    4e-39


> Ahg939211 jgi|Araly1|939211|scaffold_503402.1
Length=419

 Score =  159 bits (86),  Expect = 4e-39
 Identities = 136/160 (85%), Gaps = 3/160 (2%)
 Strand=Plus/Plus

Query  6    CAGTTGGCCTATTTCCCAGTTTCTTCGCAGTGACATACCAAGTCGAATCTACAACTTCTT  65
            |||||||||||||||||||||||||||||| ||| | || |||  |||| ||||||||||
Sbjct  240  CAGTTGGCCTATTTCCCAGTTTCTTCGCAGCGACTTGCCCAGTAAAATCAACAACTTCTT  299

Query  66   CAAAAGTTTGCCGCTGACCAAGGCAGAGCTAGACTTTCCAAGTGAAATCAACAACTTCTT  125
            |||||| || || | |||||| | |||||| ||||| || ||| |||||||||||| |||
Sbjct  300  CAAAAGATTACCACCGACCAACGAAGAGCTCGACTTGCCCAGTAAAATCAACAACTACTT  359

Query  126  CACAA---TGCCTCCGACCATCGAAGAGCACATGTCCTGA  162
            |||||   |||| ||||||| |||||||| ||||||||||
Sbjct  360  CACAAGACTGCCGCCGACCAACGAAGAGCTCATGTCCTGA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5308168279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5