BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61590.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486646 jgi|Araly1|486646|fgenesh2_kg.5__2638__AT3G61590.1 2423 0.0
> Ahg486646 jgi|Araly1|486646|fgenesh2_kg.5__2638__AT3G61590.1
Length=1762
Score = 2423 bits (1312), Expect = 0.0
Identities = 1613/1748 (92%), Gaps = 61/1748 (3%)
Strand=Plus/Plus
Query 54 gtctctctatctgtctGTATCATTCATTCGTGTTTATTTACAATCGAACCACGAAACGtc 113
|||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 1 GTCTCTCTGTCTGTCTGTATCATTCATTC--G--TATTTACAATCGAGCCACGAAACGTC 56
Query 114 tcttcttctctataaaaaccagatttttctcaatctcaatctctctcgctctcgctctcG 173
||||| | |||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 57 TCTTC-T-TCTATAAAGACCAGATTTTTCTCAATCTCAA--TCTCT--CTCTCGCTCTCG 110
Query 174 TTTTCTTTGATGAACCCTTTTACTTCATTCTTACTCTTGATAAATCC-AAATTCCCGAGA 232
||||||||||||||||||||||| ||||| |||||| | ||||||| ||| | ||||||
Sbjct 111 TTTTCTTTGATGAACCCTTTTACCTCATTTTTACTC-T--TAAATCCAAAAAT-CCGAGA 166
Query 233 AACCCATTTCATTTCCTTCTTCTGTTTCTA-GAAAGA-C-C-TC--TTC--T-TT-TCGA 282
|||||||||||||||| |||||| |||||| |||| | | | || ||| | || || |
Sbjct 167 AACCCATTTCATTTCCATCTTCTATTTCTAGGAAA-ATCTCATCTTTTCGGTCTTCTCAA 225
Query 283 TAAACCGAGATCCACGAAACCCGCATTTCCTCTCGCTAATCTATTCTAAATTTCGATACt 342
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 226 TAAACCGAGATCCACGAAACCCGCATTTCCTCTCGCAAATCGATTAAAAATTTCGATAC- 284
Query 343 ttttttttttttttATCGGTTTGAATCTCGAGAATTCCGAAGATT--------CA-GAGT 393
|||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 285 ---------TTTTTATCGGTTTGAATCTCGAGAATTCGGAAGATTCAGAGACCCACGAGT 335
Query 394 CTCCATAGTCGAAGAGGCTCTTGAGAATGGAAGCAGAAACGTCTTGGACCAATTATCCGT 453
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 336 ATCCATAGTCGAAGTGGCTCTTGAGAATGGAAGCAGAAACGTCTTGGACTAATTATCCGT 395
Query 454 ACAGCTACATTACATATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGACGATGAAG 513
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 396 ACAGCTACATTACTTATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGATGATGAAG 455
Query 514 CCAAAGTCGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCC 573
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CCAAAGTTGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCC 515
Query 574 TCTCGTTTCTACCCATTGCAAGCATCTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACG 633
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 516 TCTCGTTTCTACCCATTGCAAGCATTTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACG 575
Query 634 AGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCGGTTTCCCAAAGGC 693
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 576 AGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCTGTTTCTCAAAGGC 635
Query 694 CTTGGTACTTCATGTTCACTACCACGGATGATCCATCTGGTTATGCTTATGACCCCATTA 753
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 636 CTTGGTACTTCATGTTCACTAGCACGGATGATCCATCGGGTTATGCTTATGACCCGATTA 695
Query 754 TCCGCAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCCAATTGGTTTGTTGCTT 813
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 696 TCCGGAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCGAATTGGTTTGTTGCTT 755
Query 814 CCTCTTGTGGATTGGTTTGCTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAA 873
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCTCTTGTGGATTGGTTTGTTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAA 815
Query 874 ATCCAATTACCAAACAATGGAGGACGCTTATTGAACCTCCTGGTCACAAATCGACAGATT 933
|||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 816 ATCCAATTACCAAACAATGGAGGAGGCTTATTGAACCTCCCGGTCACAGATCGACAGATT 875
Query 934 ACACGGCAATGTCTACCTCCGTAAACCGAG----CGAA-C---CA-AGCAGTAAAC-CGC 983
|||||||||||||||||||||| ||||||| | || | || |||||| ||| ||
Sbjct 876 ACACGGCAATGTCTACCTCCGTGAACCGAGCTAACCAATCAAACAGAGCAGT-AACACGT 934
Query 984 GCAAACCGGAGTTACTCAGTCTCGATAGTGAAATCGAAGCAAGTTCCAGGGAATTTCTTC 1043
| |||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 935 GGAAACCGGACTTACTCAGTCTCTATAGTGAAATCGAAGCAAGTTACTGGGAATTTCTTC 994
Query 1044 CAATGGGATCTCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATTAGTA 1103
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 995 CAATGGGATATCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATCAGTA 1054
Query 1104 AACGATGTCTTATCCGGATGGAGAGGAGGGAACGAGAGTGTGATCTGCAACAATGTTCTT 1163
| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1055 ACCGATGTCTTATCCGGATGGAGAGGAGGAAACGAGAGTGTGATCTGCAACGATGTTCTT 1114
Query 1164 TACTTCATGATATACTCAACGGGAGGCTCAGATCATCGCCACGGCTTGATCGCTTCGAAT 1223
||||||||||| ||| | |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1115 TACTTCATGATTTACCCCACGGGAGGCTCAGATCATCGACACGGCTTGATTGCTTCCAAT 1174
Query 1224 CTATCCTCGATAGGATCACCGTCAAGCGGAATCTTGATGAGGAGTTTCATTCCAATGCCG 1283
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1175 CTATCCTCGATTGGATCATCGTCAAGCGGCATCTTGATGAGGAGTTTCATTCCAATGCCG 1234
Query 1284 TGTTCTTTAACCTGCGGGAGATTGATGAATCTAAGAGAGAGGCTTGTGATTGTCGGAGGA 1343
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1235 TGTTCTTTAACCTGCGGAAGATTGATGAATCTAAGAGAGAGGCTTGTGATCGTTGGAGGA 1294
Query 1344 ATCGGGAAACATGATCGACCAGAGGTTATAAAAGGGATAGGGATTTGGGTTTTGAAAGGG 1403
||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1295 ATCGGGAAACACGATCGACCAGAGGTTATAAAAGGAATTGGGATTTGGGTTCTGAAAGGG 1354
Query 1404 AAGGAATGGGTAGAGATGGCGAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTC 1463
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1355 AAAGAATGGGTAGAAATGGCTAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTC 1414
Query 1464 GACGAGGTTTTCGCGAGTAGTGGCACGGATGATTTGGTTTACATTCAAAGCTATGGATCT 1523
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1415 GACGAGGTTTTCGCGAGTAGTGGCACTGATGATTTGGTTTACATTCAAAGCTATGGATCT 1474
Query 1524 CCCGCGCTTCTCACGTTCGACATGAATCTCAAGTATTGGAGATGGTCTCAGAAATGTCCT 1583
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1475 CCCGCGCTTCTCACTTTCGACATGAATCTCAAGTACTGGAGATGGTCTCAAAAATGTCCT 1534
Query 1584 GTTACTAAAAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAG 1643
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 GTTACTAAGAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAG 1594
Query 1644 ATTGCTCCTTAGTTGCAATGAAGAAGCAAATGGGTCTGTGAAAGTCTTGGTCTTTTGGAT 1703
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1595 ATTGCTCCGTAGTTGCAATGAAGAAGCAAATGGGTCTGCAAAAGTCTTAGTCTTTTGGAT 1654
Query 1704 TGTTTTTGCACAGAGAAATCGCCGGCGGCTTT-ATGAAGATGATGATACGGTAATGTTTT 1762
|||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||
Sbjct 1655 TGTTTTTGCACAGAGAAATCGCCGGCGG-TTTGATGAAGATGAT-A--CGGTAATGTTTT 1710
Query 1763 TAAATTTT 1770
||| ||||
Sbjct 1711 TAATTTTT 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5