BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61600.1
Length=2178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486647 jgi|Araly1|486647|fgenesh2_kg.5__2639__AT3G61600.1 3310 0.0
Ahg483774 jgi|Araly1|483774|fgenesh2_kg.4__2834__AT2G46260.1 1550 0.0
> Ahg486647 jgi|Araly1|486647|fgenesh2_kg.5__2639__AT3G61600.1
Length=2173
Score = 3310 bits (1792), Expect = 0.0
Identities = 2071/2197 (94%), Gaps = 53/2197 (2%)
Strand=Plus/Plus
Query 4 TTGGTCTCGTTGAGCCTTTCG--T-CTA---TCTCTCACCTG-AAAGAAAGACGTTCAGC 56
|||||||||| |||||||||| | ||| ||||||||||| ||||||||||||||| |
Sbjct 2 TTGGTCTCGTAGAGCCTTTCGTCTCCTACTCTCTCTCACCTGAAAAGAAAGACGTTCAAC 61
Query 57 TTTCTCTTTCCAAAATCAAAAGCTCTCCGATCAGTTTCTCCGGCTTAGGAAATTAATTGA 116
||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 62 TTTCTCTTTCCAAAACCAAAAGCTCTCCGATCAGTTTCTCCGGCTGAGGAAAATAGTTGA 121
Query 117 AGGAAGGTGATGAGAGGTACTACTGAGAATACGGATCTGTTCGATCCCAAAACCCAAATG 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 122 AGGAAGGTGATGAGAGGTACTAATGAGAATACGGATCTGTTCGATCCCAAAACCCAAATG 181
Query 177 GATCCTGACTTCACTCGTCATGGTTCTTCCTCCGACGGCGATTTTGGATTCGCTTTTAAC 236
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 182 GATCCTGATTTCACTCGTCATGGTTCTTCTTCCGACGGCGATTTTGGATTCGCTTTTAAC 241
Query 237 GACAGTAACTTCTCTGATCGTTTGCTTCGGATCGAGATCATGGGTGGACCTTCGGATTCT 296
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 242 GACAGTAACTTCTCTGATCGCTTGCTTCGGATCGAGATCATGGGTGGACCTTCTGATTCT 301
Query 297 CGGTCTGAAGTTGAAGGGTGTACGAGTATCGCTGATTGGGCTCGTCATCGCAAGAGAAGA 356
|||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 302 AGGTCCGATGTTGAAGGGTGTACGAGTATCGCTGATTGGGCTCGTCATCGGAAAAGAAGA 361
Query 357 AGAGAAGATATCAAGAAGGAATC---TGGTGTCACGATTTCAGACATTGTGGCATGTCCT 413
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 362 AGGGAAGATATCAAAAAGGAATCTGGTGGTGTCACGATTTCAGACATTGTGGCATGTCCT 421
Query 414 GAGGAGCAGATTTTAACTGATGAACAACCTGACATGGATGGATGTCCTGGTGGTGAGAAT 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 422 GAGGAGCAGATTTTAACTGATGAACAACCTGACATGGATGGATGTCCTGGTGGTGAAAAT 481
Query 474 CCTGATGATGAAGGAGGAGAGGCAATGGTTGAAGAAGCTTTATCAGGTGATGAAGAGGAA 533
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 482 CTTGATGATGAAGGAGGAGAGGCAATGGTTGAAGAAGCTTTATCTGGTGATGAAGAGGAA 541
Query 534 ACGTCTAGTGAGCCAAACTGGGGAATGGATTGTTCTACAGTTGTTAGGGTTAAAGAACTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ACGTCTAGTGAGCCAAACTGGGGAATGGATTGTTCTACAGTTGTTAGGGTTAAAGAACTT 601
Query 594 CATATTAGTTCTCCTATTTTAGCTGCCAAAAGCCCTTTCTTTTACAAGTTGTTCTCCAAT 653
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CATATCAGTTCTCCTATTTTAGCTGCCAAAAGCCCTTTCTTTTACAAGTTGTTCTCCAAT 661
Query 654 GGAATGAGGGAATCTGAGCAAAGGCATGTCACCCTTAGGATTAATGCATCAGAGGAAGCT 713
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 662 GGAATGAGGGAATCTGAGCAAAGGCATGTCACTCTTAGAATTAATGCATCAGAAGAAGCT 721
Query 714 GCTTTGATGGAGCTTTTAAACTTTATGTATAGCAATGCGGTATCTGTCACCACAGCACCT 773
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 722 GCTTTGATGGAGCTTTTAAACTTTATGTATAGCAATGCGGTCTCTGTCACCACAGCACCT 781
Query 774 GCCTTATTAGATGTGTTGATGGCTGCTGATAAGTTTGAAGTTGCCTCTTGTATGAGGTAC 833
|||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 782 GCCTTATTAGATGTCCTGATGGCTGCCGATAAGTTTGAAGTTGCCTCTTGCATGAGGTAC 841
Query 834 TGCAGTAGACTTCTCCGTAATATGCCTATGACTCCAGAGTCTGCCCTGCTCTATCTCGAG 893
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 842 TGTAGTAGACTTCTCCGTAATATGCCTATGACTCCAGAGTCTGCGCTGCTCTATCTCGAG 901
Query 894 CTTCCCTCTAGTGTTCTAATGGCCAAAGCTGTTCAGCCTTTAACTGATGCTGCAAAACAG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTTCCCTCTAGTGTTCTAATGGCCAAAGCTGTTCAGCCTTTAACTGATGCTGCAAAACAG 961
Query 954 TTCCTTGCAGCCCGCTACAAGGATATTACCAAGTTTCATGAGGAGGTAATGTCTCTACCT 1013
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 962 TTCCTTGCCGCCCGCTACAAGGATATTACCAAGTTTCATGAGGAGGTTATGGCTCTACCT 1021
Query 1014 TTGGCTGGAATTGAGGCAATTCTATCAAGCGATGAACTCCAAATTGCATCAGAGGATGCA 1073
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1022 TTAGCTGGAATTGAGGCAATTCTATCAAGCGATGATCTCCAAATCGCATCAGAGGATGCA 1081
Query 1074 GTTTATGATTTTATCTTGAAGTGGGCAAGGGCGCAATACCCTTGTTTGGAAGAGCGAAGA 1133
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1082 GTTTATGATTTTATCTTGAAGTGGGCAAGGGCACAATACCCTTGTTTGGAAGAGCGGAGA 1141
Query 1134 GAGATTCTCGGGTCACGCCTTGCACTCTCCATCCGCTTCCCATTCATGACATGCCGAAAG 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GAGATTCTCGGGTCACGCCTTGCACTCTCCATCCGCTTCCCATTCATGACATGCCGAAAG 1201
Query 1194 CTGAAGAAAGTGCTGACTTGCAGTGACTTTGAGCATGAAATAGCATCAAAGCTTGTTCTA 1253
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1202 CTGAAGAAAGTACTGACATGCAGTGACTTTGAGCATGAAATAGCATCCAAGCTTGTTCTA 1261
Query 1254 GAAGCTCTTTTCTTCAAAGCAGAAGCCCCACACAGACAACGTAGCCTAGCCTCCGAAGAA 1313
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1262 GAAGCTCTTTTCTTCAAAGCAGAAGCCCCGCACAGACAACGTAGCCTAGCCTCCGAAGAA 1321
Query 1314 TCTGCATCCCTGAACCGCCGCCTGATAGAGAGGGCTTACAAATACAGACCCGTCAAAGTG 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TCTGCATCCCTGAACCGCCGCCTGATAGAGAGGGCTTACAAATACAGACCCGTCAAAGTA 1381
Query 1374 GTCGAGTTTGAGCTTCCTAGACCGCAGTGTGTAGTCTACCTAGACTTGAAAAGAGAAGAA 1433
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1382 GTCGAGTTTGAGCTTCCAAGACCGCAGTGCGTAGTCTACCTAGACCTGAAAAGAGAAGAA 1441
Query 1434 TGTGGGGGACTGTTCCCGTCGGGTAGAGTGTATTCGCAGGCCTTTCACTTGGGAGGTCAA 1493
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TGTGGGGGATTGTTCCCGTCGGGTAGAGTGTATTCGCAGGCCTTTCACTTGGGAGGTCAA 1501
Query 1494 GGGTTTTTCCTGTCAGCTCACTGCAACATGGACCAACAGAGCTCGTTCCACTGTTTCGGG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 GGGTTTTTCCTGTCAGCTCACTGCAACATGGACCAACAGAGCTCGTTCCACTGTTTCGGG 1561
Query 1554 CTGTTCCTAGGGATGCAGGAGAAAGGGTCGGTGAGTTTCGGAGTGGACTATGAATTCTCG 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 CTGTTCCTAGGGATGCAGGAGAAAGGGTCGGTGAGTTTCGGAGTGGACTATGAATTCTCG 1621
Query 1614 GCAAGGTCAAAGCCCGCAGAGGATTTCATAAGCAAATACAAAGGGAACTACACATTCACA 1673
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 GCGAGGTCAAAGCCAGCGGAGGATTTCATAAGCAAATACAAAGGGAACTACACATTCACA 1681
Query 1674 GGAGGGAAAGCAGTAGGTTACAGAAACCTGTTTGGGGTCCCATGGACGTCTTTTATAGCG 1733
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1682 GGAGGGAAAGCAGTAGGTTACAGAAACCTGTTTGGGGTACCATGGACGTCTTTTATAGCA 1741
Query 1734 GAAGATAGTCAATACTTCATCAATGGCATTCTCCATCTCAGAGCAGAGCTTACCATCAAA 1793
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 GAGGATAGTCAATACTTCATCAATGGCATTCTCCATCTCAGAGCAGAGCTTACCATCAAA 1801
Query 1794 AGGTCTACAGATCCTTAGTGACCGTTTACTTCT-CAATTGTCACTGTCTCTCT-TT-CCT 1850
||||||||||||||||||||||||||| ||| | |||| | |||||||||||| || |||
Sbjct 1802 AGGTCTACAGATCCTTAGTGACCGTTTCCTTGTTCAAT-GCCACTGTCTCTCTCTTTCCT 1860
Query 1851 TTACCTGCTGCTAAATCTCTCGCTCTCTCT------AACTTGCCtttttttt-cttttct 1903
||||||||||||| ||||||| |||||||| |||||| ||||||||| ||| |||
Sbjct 1861 TTACCTGCTGCTAGATCTCTCTCTCTCTCTCCCTCTAACTTGTCTTTTTTTTTCTTCTCT 1920
Query 1904 tttATAAGGCTTGAAGAAGACTAATAAAGCTTATAAAAGTAAGGTTAAAAACGTTTCGAC 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TTTATAAGGCTTGAAGAAGACTAATAAAGCTTATAAAAGTAAGGTTAAAAACGTTTCGAC 1980
Query 1964 GACAACGTTATAAGAAGAATGTAAATGCGTTCtttttttCTATCTAC-C-CTTA-CTCTT 2020
|||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||
Sbjct 1981 AACAACGTTATAAGAAGAATGTAAATGCGTTCTTTTTTTCTATCTACTCTCTTGGCT-TT 2039
Query 2021 --TTGGCTTTGGATTATAAGTTTAACTCTTCAATGAAATTCTTAGCGTAGAGATTCTTGT 2078
|||| ||| | |||||||| ||||||||||||||||||||||| | |
Sbjct 2040 GGTTGG-TTTATAGTATAAGTT-AACTCTTCAATGAAATTCTTAGC--A----T------ 2085
Query 2079 ATTATGAACGAAGTTGTGAACAGAAAAGAA-CGAACGTAACT-CTCTCGTCTCATTTAAC 2136
| || ||||||||||||||||| ||| | | | |||| | ||||||||||||||
Sbjct 2086 A----GA--GAAGTTGTGAACAGAAA-GAATCTATCAAAACTACA-TCGTCTCATTTAAC 2137
Query 2137 TAATTTATCT-AGTTGGATTGAAATAGACATGACTTT 2172
||| ||| || ||||||||||||||||||||||||||
Sbjct 2138 TAAATTA-CTTAGTTGGATTGAAATAGACATGACTTT 2173
> Ahg483774 jgi|Araly1|483774|fgenesh2_kg.4__2834__AT2G46260.1
Length=1919
Score = 1550 bits (839), Expect = 0.0
Identities = 1364/1616 (84%), Gaps = 42/1616 (3%)
Strand=Plus/Plus
Query 195 CATGGTTCTTCCTCCGACGGCGATTTTGGATTCGCTTTTAACGACAGTAACTTCTCTGAT 254
||||||||||||||||| || |||||||| |||||||| || |||||||||||||| |||
Sbjct 209 CATGGTTCTTCCTCCGAAGGTGATTTTGGTTTCGCTTTCAATGACAGTAACTTCTCCGAT 268
Query 255 CGTTTGCTTCGGATCGAGATCATGGGTGGACCTTCGGATTCTCGGTCTGAAGTTGAAGGG 314
|||||||| |||||||||||| ||||||| |||||||||||| ||||||| | ||||||
Sbjct 269 CGTTTGCTCCGGATCGAGATCTTGGGTGGGCCTTCGGATTCTAGGTCTGATGGTGAAGGA 328
Query 315 TGTACGAGTATCGCTGATTGGGCTCGTCATCGCAAGAGAAGAAGAGAAGATATCAAGAAG 374
||||||||||| || |||||||||||||| ||||||||||||||||| || | |||||||
Sbjct 329 TGTACGAGTATTGCCGATTGGGCTCGTCACCGCAAGAGAAGAAGAGAGGACAACAAGAAG 388
Query 375 GA-ATCTGGTGTCACGATTTCAGACATTGTGGCATGTCCTGAGGAGCAGATTTTAACTGA 433
|| | |||||| ||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 389 GACA-ATGGTGTTGCGATTTCAGACATTGTGGCATGTGCTGAAGAACAGATTTTAACCGA 447
Query 434 T--GAA-CAACCTGACATGGATGGAT-GTCCTGGTGGTGAGAATCCTGATGATGAAGGAG 489
| || |||||||| |||||| ||| ||||||||||||| |||| ||| |||| | ||
Sbjct 448 TAACAACCAACCTGATATGGAT-GATGGTCCTGGTGGTGATAATCTTGACGATG-A--AG 503
Query 490 GAGAGGCAATGGTTGAAGAAGCTTTATCAGGTGATGAAGAGGAAACGTCTAGTGAGCCAA 549
||||||| ||||| ||||| ||||||||||||||||| || | | ||||| |||||||
Sbjct 504 GAGAGGCTATGGTCGAAGAGGCTTTATCAGGTGATGACGATG---CATCTAGCGAGCCAA 560
Query 550 ACTGGGGAATGGATTGTTCTACAGTTGTTAGGGTTAAAGAACTTCATATTAGTTCTCCTA 609
| ||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 561 ATTGGGGTATTGATTGTTCTACTGTTGTTAGAGTTAAAGAACTGCATATTAGTTCCCCTA 620
Query 610 TTTTAGCTGCCAAAAG-CCCTTTCTTTTACAAGTTGTTCTCCAATGGAATGAGGGAATCT 668
| || ||||| ||||| |||||| || ||||||||||| || |||||||||||||||||
Sbjct 621 TCTTGGCTGCTAAAAGCCCCTTT-TTCTACAAGTTGTTTTCTAATGGAATGAGGGAATCA 679
Query 669 GAGCAAAGGCATGTCACCCTTAGGATTAATGCATC-AGAGGAAGCTGCTTTGATGGAGCT 727
|| ||||| ||||| |||||||| |||| |||| | |||||||| |||||||||||||||
Sbjct 680 GAACAAAGACATGTAACCCTTAGAATTAGTGCA-CAAGAGGAAGGTGCTTTGATGGAGCT 738
Query 728 TTTAAACTTTATGTATAGCAA-TGCGGTATCTGTCACCACAGCACCTGCCTTATTAGATG 786
||||||||||||||||||||| | | || |||||| ||||||||||| ||||||||||
Sbjct 739 TTTAAACTTTATGTATAGCAACT-CTCTAAGTGTCACAACAGCACCTGCTTTATTAGATG 797
Query 787 TG-TTGATGGCTGCTGATAAGTTTGAAGTTGCCTCTTGTATGAGGTACTGCAGTAGACTT 845
|| || ||||||||||| |||||||| ||||| || || |||||||| || ||||||||
Sbjct 798 TGCTT-ATGGCTGCTGACAAGTTTGAGGTTGCTTCCTGCATGAGGTATTGTAGTAGACTA 856
Query 846 CTCCGTAATATGCCTATGACTCCAGAGTCTGCCCTGCTCTATCTCGAGCTTCCCTCTAGT 905
|| || |||||||| ||||| || || || || ||||||||||||||||||||||||||
Sbjct 857 CTGCGCAATATGCCCATGACCCCTGATTCCGCTTTGCTCTATCTCGAGCTTCCCTCTAGT 916
Query 906 GTTCTAATGGCCAAAGCTGTTCAGCCTTTAACTGATGCTGCAAAACAGTTCCTTGCAGCC 965
||| ||||||| |||| || || ||| |||| ||||| ||||| ||||||||||| ||
Sbjct 917 GTTTTAATGGCTGAAGCAGTCCAACCTCTAACCGATGCAGCAAAGCAGTTCCTTGCCTCC 976
Query 966 CGCTACAAGGATATTACCAAGTTTCATGAGGAGGTAATGTCTCT-ACCTTTGGCTGGAAT 1024
|||||||||||||||||||| |||||||| ||||| ||| | || ||| |||||||||||
Sbjct 977 CGCTACAAGGATATTACCAAATTTCATGATGAGGTTATGGC-CTTACCATTGGCTGGAAT 1035
Query 1025 TGAGGCAATTCTATCAAGCGATGAACTCCAAATTGCATCAGAGGATGCAGTTTATGATTT 1084
|||||| || || || |||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 1036 TGAGGCGATACTGTCGAGCGATGATCTCCAAATTGCTTCTGAGGATGCTGTTTATGATTT 1095
Query 1085 TATCTTGAAGTGGGCAAGGGCG-CAATACCCTTGTTTGGAAGAGCGAAGAGAGATTCTCG 1143
| | ||||| |||||||||| | || ||| || |||||||| || ||||||||||| |
Sbjct 1096 TGTTTTGAAATGGGCAAGGG-GACAGTACAGTTCATTGGAAGACCGTAGAGAGATTCT-G 1153
Query 1144 GGT-CACGCCTTGCACTCTCCATCCGCTTCCCATTCATGACATGCCGAAAGCTGAAGAAA 1202
||| |||||||||| |||| |||||||||||||| ||||||||| ||||||||||| |||
Sbjct 1154 GGTTCACGCCTTGCGCTCTACATCCGCTTCCCATACATGACATGTCGAAAGCTGAA-AAA 1212
Query 1203 G-TGCTGACTTGCAGTGACTTTGAGCATGAAATAGCATCAAAGCTTGT-TCTAGAAGCTC 1260
| | || || || || || |||||||||||| |||||||||||| || | ||||||| |
Sbjct 1213 GGTACTAACGTGTAGCGATTTTGAGCATGAAGTAGCATCAAAGCAAGTAT-TAGAAGCGC 1271
Query 1261 TTTTCTTCAAAGCAGAAGCCCCACACAGACAACGTAGCCTAGCCTCCGAAGAATCTG-CA 1319
| |||||||||||||||||||||||||| ||||| | ||| || | |||| ||| | |
Sbjct 1272 TCTTCTTCAAAGCAGAAGCCCCACACAGGCAACGCATCCTCGCAGCTGAAGGATCAGAC- 1330
Query 1320 TCCCTGAACCGCCGCCTGATAGAGAGGGCTTACAAATACAGACCCGTCAAAGTGGTCGAG 1379
||| |||| ||||| | ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1331 TCCTTGAATCGCCGTTTCATAGAGAGGGCTTACAAATACAGACCCGTAAAAGTGGTGGAG 1390
Query 1380 TTTGAGCTTCCTAGACCGCAGTGTGTAGTCTACCTAGACTTGAAAAGAGAAGAATGTGGG 1439
|||||||||||| | ||||| |||||||| ||| | |||||||| |||| ||||| |
Sbjct 1391 TTTGAGCTTCCTCGGCCGCAATGTGTAGTGTACTTGGACTTGAAGCGAGAGGAATGCGCA 1450
Query 1440 GGACTGTTCCCGTCGGGTAGAGTGTATTCGCAGGCCTTTCACTTGGGAGGTCAAGGGTT- 1498
||| ||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 1451 GGATTGTTCCCTTCGGGAAGAGTCTATTCTCAGGCCTTCCACTTAGGAGGTCAAGGGTTC 1510
Query 1499 TTTCCTGTCAGCTCACTGCAACATGGACCAACAGAGCTCGTTCCACTG-TTTCGGGCTGT 1557
|||| | || || ||||||||||||||||| || |||||||||||||| ||| ||||| |
Sbjct 1511 TTTC-TCTCGGCACACTGCAACATGGACCAGCAAAGCTCGTTCCACTGCTTT-GGGCTAT 1568
Query 1558 TCCTAGGGATGCAGGAGAAAGG-GTCGGTGAGTTTCGGAGTGGACTATGAATTCTCGGCA 1616
|||| |||||||| || ||||| | | |||||||| || |||||||| |||||| |||||
Sbjct 1569 TCCTCGGGATGCAAGAAAAAGGAG-CTGTGAGTTTTGGTGTGGACTACGAATTCGCGGCA 1627
Query 1617 AG-G-TCAAAGCCCG-CAGAGGATTTCATAAGCAAATACAAAGGGAACTACACATTCACA 1673
|| | | ||| | | || || | | |||||||||||||||| |||||||||||||||
Sbjct 1628 AGAGATAAAAAATCATCCGAAGAATACGTAAGCAAATACAAAGGAAACTACACATTCACA 1687
Query 1674 GGAGGGAAAGCAGTAGGTTACAGAAACCTGTTTGGGGTCCCATGGACGTCTTTTATAGCG 1733
|| ||||||||||| ||||||||||| || |||||| | || ||||| || || || ||
Sbjct 1688 GGGGGGAAAGCAGTTGGTTACAGAAATCTTTTTGGGATTCCGTGGACTTCGTTCATTGCT 1747
Query 1734 GAAGATAGTCAATACTTCATCAATGGCATTCTCCATCTCAGAGCAGAGCTTACCAT 1789
|| || ||||| | ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1748 GATGACAGTCAGCATTTCATCAATGGCATTCTCCATCTCAGAGCCGAGCTCACCAT 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81970207240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5