BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61610.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486649 jgi|Araly1|486649|fgenesh2_kg.5__2641__AT3G61610.1 1707 0.0
Ahg945943 jgi|Araly1|945943|scaffold_702172.1 422 5e-117
Ahg890798 jgi|Araly1|890798|Al_scaffold_0007_2784 399 2e-110
Ahg951842 jgi|Araly1|951842|scaffold_2000002.1 211 1e-53
> Ahg486649 jgi|Araly1|486649|fgenesh2_kg.5__2641__AT3G61610.1
Length=1495
Score = 1707 bits (924), Expect = 0.0
Identities = 1063/1129 (94%), Gaps = 14/1129 (1%)
Strand=Plus/Plus
Query 450 GAAAATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGA 509
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GAAAATGGGTCATTACGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGA 429
Query 510 TTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATAAG 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 430 TTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATTAG 489
Query 570 TTTACATGGAGGACAAGTGATTTCATGGAGGAATGAACTAGGCGAAGAGCTTCTTTTCAC 629
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 490 TTTACATGGAGGACAAGTGGTTTCATGGAGGAATGAACAAGGAGAAGAGCTTCTTTTCAC 549
Query 630 TAGCAATAAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTA 689
||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 550 CAGCAACAAGGCTTTATTCAAACCTCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTA 609
Query 690 TCCGCAGTTTGGGGATTGTGGATCACTGGATCAACATGGGTTTGCAAGGAACAAAATTTG 749
||| |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 610 TCCTCAGTTTGGTGATTGTGGATTACTGGATCTACATGGGTTTGCAAGGAACAAAATTTG 669
Query 750 GGTAATCGATGAGAACCCACCTCCACTTAACTCAAACGAATCCT-TAGGAAAATCCTTTG 808
||| ||||||||||| |||||||||||| |||||||||||||| | |||||||||||||
Sbjct 670 GGTTATCGATGAGAATCCACCTCCACTTTACTCAAACGAATCCACT-GGAAAATCCTTTG 728
Query 809 TTGATCTTCTTTTGAAACCATCAGAAGATGACTTAAAGCAATGGCCTCATAGTTTCGAGT 868
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 729 TTGATCTTCTTTTGAAATCATCAGAAGATGACTTAAAGCTATGGCCTCATAGTTTCGAGT 788
Query 869 TCCGTCTTAGGGTTTCGCTTGCTGTAGATGGCGACTTAACATTGACTT-CTCGGATTAGA 927
||||||| |||||||||||||||||||||||||||||||| || | || || ||||||||
Sbjct 789 TCCGTCTCAGGGTTTCGCTTGCTGTAGATGGCGACTTAACGTT-AGTTTCTAGGATTAGA 847
Query 928 AACATCAATGGCAAGCCTTTTAGCTTCTCATTTGCATATCACACCTACCTCTCTGTCTCT 987
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 848 AACATCAATGGCAAGCCCTTTAGCTTCTCATTTGCATATCACACTTACCTCTCTGTCTCT 907
Query 988 GACATAAGTGAAGTGAGAATTGAAGGGTTGGAGACATTGGACTACTTAGACAACCTCAGC 1047
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 908 GACATAAGTGAAGTGAGAATTGAAGGGTTGGAAACATTGGACTACTTAGACAACCTCAGC 967
Query 1048 CAAAGACAGCTTTTGACTGAACAAGGCGATGCAATAACCTTTGAATCCGAGATGGACCGG 1107
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AAAAGAGAGCTTTTGACAGAACAAGGCGATGCAATAACCTTTGAATCCGAGATGGACCGG 1027
Query 1108 ACATACCTTAGATCACCAAAGGTGGTTGCAGTTCTTGATCATGAACGGAAAAGAACATAT 1167
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 ACTTACCTTAGATCACCAAAGGTGGTTGCAGTTCTTGATCATGAACGGAAAAGAACATAT 1087
Query 1168 GTTATCGGAAAGGAAGGACTTCCAGACACCGTGGTGTGGAATCCATGGGAGAAGAAATCG 1227
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1088 GTTATCGGAAAAGAAGGTCTTCCAGACACTGTGGTGTGGAATCCATGGGAGAAGAAATCG 1147
Query 1228 AAAACAATGGCGGATTTTGGTGATGAAGAGTACAAAAGCATGCTTTGTGTGGATGGTGCA 1287
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 1148 AAAACAATGGCGGATTTTGGGGATGATGAGTACAAAACCATGCTTTGTGTGGATGGTGCA 1207
Query 1288 GCAGTGGAGAGACCGATCACTTTGAAGCCAGGAGAAGAATGGACCGGCCGGCTAATATTG 1347
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1208 GCAGTTGAGAGACCGATCACTTTGAAGCCAGGAGAAGAATGGACCGGCCGGCTAATGTTG 1267
Query 1348 ACCGCTGTTAAATCCAGTTTCTGCTTCGATCAACTCGAACTACAGAGCAAGGGATTCTGA 1407
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1268 ACAGCTGTTAAATCCAGTTTCTGCTTCGATCAACTCGAACTACAGAGCAAAGGATTCTGA 1327
Query 1408 CTCTA----G---TTTCTGTATGCAACATTGGAAGAGCAGAGCCACCGTTTCTTTTA-T- 1458
||||| | |||||| |||||||| ||||||||||||| |||||||||| ||| |
Sbjct 1328 CTCTACTCTGCAGTTTCTGCATGCAACAGTGGAAGAGCAGAGGCACCGTTTCTATTAATT 1387
Query 1459 CTCTTTCTTTTTGTTGATTCTTGTTTTATCACATTAGAGCTTATGACCTGGTGATTTCTC 1518
|||||| |||| ||||||||| ||||| ||||| |||||||||||| |||||||||||||
Sbjct 1388 CTCTTTATTTT-GTTGATTCTCGTTTTCTCACAGTAGAGCTTATGAGCTGGTGATTTCTC 1446
Query 1519 AGACCAGTCTTGTGATGTAGTGACAGAAAAAGCCTCTGGTCtttttttt 1567
|||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1447 AGACCAGTCTCGTGATGTAGTGACAGTAAAAGCCTCTGGTCTTTTTTTT 1495
Score = 185 bits (100), Expect = 7e-46
Identities = 119/128 (93%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1 CTTAAATTCAACAAGTATTTAATCTCTTCCTTTAAATATAAACTCTCAAGTTCATCAAAC 60
|||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CTTAAATTCACCAATTAATTAATCTCTTCCTTTAAAGATAAACTCTCAAGTTCATCAAAC 60
Query 61 TGTTTCCATAAGAACTAGTTT-TTCTTTTCTTCAGATCCAATTTTATAAAGCAAACCTGA 119
||||||||||| ||||||||| ||||||| ||||||||| |||| |||||||||||||||
Sbjct 61 TGTTTCCATAATAACTAGTTTATTCTTTTGTTCAGATCCCATTTAATAAAGCAAACCTGA 120
Query 120 GATTTTTA 127
||||||||
Sbjct 121 GATTTTTA 128
> Ahg945943 jgi|Araly1|945943|scaffold_702172.1
Length=299
Score = 422 bits (228), Expect = 5e-117
Identities = 244/252 (97%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 445 AAATTGAAAATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATC 504
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 22 AAATTGAAAATGGGTCATTACGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATC 81
Query 505 AAAGATTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 AAAGATTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAG 141
Query 565 ATAAGTTTACATGGAGGACAAGTGATTTCATGGAGGAATGAACTAGGCGAAGAGCTTCTT 624
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 142 ATTAGTTTACATGGAGGACAAGTGATTTCATGGAGGAATGAACAAGGCGAAGAGCTTCTT 201
Query 625 TTCACTAGCAATAAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATT 684
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 202 TTCACTAGCAACAAGGCTATATTCAAACCTCCTAAATCAATGCGTGGAGGGATTCAGATT 261
Query 685 TGTTATCCGCAG 696
|||||||| |||
Sbjct 262 TGTTATCCTCAG 273
> Ahg890798 jgi|Araly1|890798|Al_scaffold_0007_2784
Length=249
Score = 399 bits (216), Expect = 2e-110
Identities = 234/243 (96%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 454 ATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGATTGG 513
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCATTACGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATCAAAGATTGG 60
Query 514 AATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAGATAAGTTTA 573
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 AATGGCGTTGACCAAGTCCTTCTCAGGAACCCACATGGTGCTTCTGCCAAGATTAGTTTA 120
Query 574 CATGGAGGACAAGTGATTTCATGGAGGAATGAACTAGGCGAAGAGCTTCTTTTCACTAGC 633
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CATGGAGGACAAGTGATTTCATGGAGGAATGAACAAGGCGAAGAGCTTCTTTTCACTAGC 180
Query 634 AATAAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCG 693
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 181 AACAAGGCTATATTCAAACCTCCTAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCT 240
Query 694 CAG 696
|||
Sbjct 241 CAG 243
> Ahg951842 jgi|Araly1|951842|scaffold_2000002.1
Length=225
Score = 211 bits (114), Expect = 1e-53
Identities = 118/120 (98%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 445 AAATTGAAAATGGGTCAATATGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATC 504
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 23 AAATTGAAAATGGGTCATTACGCAACAGTGTGGGATCAAAAAGAAGCAAGTGAGATAATC 82
Query 505 AAAGATTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AAAGATTGGAATGGCGTTGACCAAGTCCTTCTCAGAAACCCACATGGTGCTTCTGCCAAG 142
Score = 95.3 bits (51), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 637 AAGGCTATATTCAAACCCCCAAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCGCAG 696
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 140 AAGGCTATATTCAAACCTCCTAAATCAATGCGTGGAGGGATTCAGATTTGTTATCCTCAG 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5