BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61620.1 Length=988 Score E Sequences producing significant alignments: (Bits) Value Ahg486650 jgi|Araly1|486650|fgenesh2_kg.5__2642__AT3G61620.1 1533 0.0 > Ahg486650 jgi|Araly1|486650|fgenesh2_kg.5__2642__AT3G61620.1 Length=927 Score = 1533 bits (830), Expect = 0.0 Identities = 898/930 (97%), Gaps = 7/930 (1%) Strand=Plus/Plus Query 1 CCTAATCTTTATGTTGTCGACACTC-TTTCAGTTCTCTCGACGCCGTCCATCGCCCTCCG 59 ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1 CCTAATCTTTAGGTTGTCGACACTCTTTTCAGTTCTCTCGACGCCGTCCATCACCCTCCG 60 Query 60 TCATATCGCCGCCGCTAAAGTACTGGC--AGAGAGTTCACAACAATGGAGTACGTAAACC 117 ||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 61 TCATATCGCCGCCGC--AAGTACAGACAGAGAGAGTTCACAACAATGGAGTACGTAAACC 118 Query 118 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 178 Query 178 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 238 Query 238 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 298 Query 298 ATGCAGTGGTGTTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 357 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 ATGCAGTGGTGCTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 358 Query 358 AGAAATTCGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 417 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AGAAATTTGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 418 Query 418 GCATATTAACCGAATTGATGCCTCACTCTCAGATCGATATTTTCCTTCAGGTTCTACAAG 477 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 419 GCATATTAACCGAATTGATGCCTCATTCTCAGATTGACATTTTCCTTCAGGTTCTACAAG 478 Query 478 CTGATGGAGGAACAAGATCAGCTTGTATCAATGCCGCGACTCTAGCTCTAGCAGATGCTG 537 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 479 CTGATGGAGGAACAAGATCAGCATGTATCAATGCCGCGACTCTAGCTCTCGCAGATGCTG 538 Query 538 GAATTCCAATGCGTGATCTCGCTGTTTCCTGTAGTGCTGGATATTTAAACAGTACTCCTC 597 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 539 GAATTCCAATGCGTGATCTTGCTGTTTCATGTAGTGCTGGGTATTTAAACAGTACTCCTC 598 Query 598 TTCTTGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACCGTCGGTATTC 657 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 599 TTCTGGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACAGTCGGTATTC 658 Query 658 TACCTAAATTAGACAAAGTGTCACTCCTTCAGATGGATGCCAAGTTACCGATGGAAACAT 717 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 659 TACCTAAATTAGACAAAGTGACACTCCTTCAGATGGATGCGAAGTTACCGATGGAAACAT 718 Query 718 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGCAAGGCAATTGCAGAGAGAATACGCG 777 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 719 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGTAAGGCAATTGCAGAGAGAATACGCG 778 Query 778 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 838 Query 838 TAGAGaaaaaaaCGTAAA-GCTCCAAGATTTTTGTTAATTAGATTTTGCTGTTGTTTGTG 896 ||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||| || Sbjct 839 TAGAGAAAAAA-CATAAAAGCTCCAAGATTTTTGTTAATTAGATATTGCTGTTGTTTTTG 897 Query 897 GAAGTTGAGGATAAAAAGCTAGTAGTGCAA 926 |||||||||||| ||||||||| | ||||| Sbjct 898 GAAGTTGAGGATCAAAAGCTAGAAATGCAA 927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36712369071 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5