BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61620.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486650 jgi|Araly1|486650|fgenesh2_kg.5__2642__AT3G61620.1 1533 0.0
> Ahg486650 jgi|Araly1|486650|fgenesh2_kg.5__2642__AT3G61620.1
Length=927
Score = 1533 bits (830), Expect = 0.0
Identities = 898/930 (97%), Gaps = 7/930 (1%)
Strand=Plus/Plus
Query 1 CCTAATCTTTATGTTGTCGACACTC-TTTCAGTTCTCTCGACGCCGTCCATCGCCCTCCG 59
||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 CCTAATCTTTAGGTTGTCGACACTCTTTTCAGTTCTCTCGACGCCGTCCATCACCCTCCG 60
Query 60 TCATATCGCCGCCGCTAAAGTACTGGC--AGAGAGTTCACAACAATGGAGTACGTAAACC 117
||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 61 TCATATCGCCGCCGC--AAGTACAGACAGAGAGAGTTCACAACAATGGAGTACGTAAACC 118
Query 118 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTGAAGGTCTTCGATTAGATGGTCGCCGATTCAACGAGATGAGGCAAATCGTAGCTGAAG 178
Query 178 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGGAGTTGTTTCTAAGGCTGACGGTTCTGCTGTCTTCGAGATGGGTAATACCAAAGTAA 238
Query 238 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGCAGCTGTTTATGGTCCAAGAGAGATTCAAAACAAGAGCCAGCAAAAGAAGAACGACC 298
Query 298 ATGCAGTGGTGTTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGCAGTGGTGCTGTGTGAGTATAGTATGGCTCAGTTTAGTACTGGTGATCGTAGAAGAC 358
Query 358 AGAAATTCGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAAATTTGACAGGCGATCAACAGAGCTATCTCTTGTCATCCGTCAGACAATGGAAGCTT 418
Query 418 GCATATTAACCGAATTGATGCCTCACTCTCAGATCGATATTTTCCTTCAGGTTCTACAAG 477
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 419 GCATATTAACCGAATTGATGCCTCATTCTCAGATTGACATTTTCCTTCAGGTTCTACAAG 478
Query 478 CTGATGGAGGAACAAGATCAGCTTGTATCAATGCCGCGACTCTAGCTCTAGCAGATGCTG 537
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 CTGATGGAGGAACAAGATCAGCATGTATCAATGCCGCGACTCTAGCTCTCGCAGATGCTG 538
Query 538 GAATTCCAATGCGTGATCTCGCTGTTTCCTGTAGTGCTGGATATTTAAACAGTACTCCTC 597
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 539 GAATTCCAATGCGTGATCTTGCTGTTTCATGTAGTGCTGGGTATTTAAACAGTACTCCTC 598
Query 598 TTCTTGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACCGTCGGTATTC 657
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 TTCTGGATCTGAACTATGTTGAAGACAGTGCTGGAGGAGCTGATGTAACAGTCGGTATTC 658
Query 658 TACCTAAATTAGACAAAGTGTCACTCCTTCAGATGGATGCCAAGTTACCGATGGAAACAT 717
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 659 TACCTAAATTAGACAAAGTGACACTCCTTCAGATGGATGCGAAGTTACCGATGGAAACAT 718
Query 718 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGCAAGGCAATTGCAGAGAGAATACGCG 777
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TTGAGACAGTGTTTGCATTGGCTTCTGAAGGTTGTAAGGCAATTGCAGAGAGAATACGCG 778
Query 778 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGTACTTCAAGAAAACACCAAACAGCTAGAGTATCGCCGAGCTGCATAAACTTTAGAGT 838
Query 838 TAGAGaaaaaaaCGTAAA-GCTCCAAGATTTTTGTTAATTAGATTTTGCTGTTGTTTGTG 896
||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 839 TAGAGAAAAAA-CATAAAAGCTCCAAGATTTTTGTTAATTAGATATTGCTGTTGTTTTTG 897
Query 897 GAAGTTGAGGATAAAAAGCTAGTAGTGCAA 926
|||||||||||| ||||||||| | |||||
Sbjct 898 GAAGTTGAGGATCAAAAGCTAGAAATGCAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5