BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61630.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486651 jgi|Araly1|486651|fgenesh2_kg.5__2643__AT3G61630.1 1624 0.0
> Ahg486651 jgi|Araly1|486651|fgenesh2_kg.5__2643__AT3G61630.1
Length=1306
Score = 1624 bits (879), Expect = 0.0
Identities = 1195/1335 (90%), Gaps = 72/1335 (5%)
Strand=Plus/Plus
Query 18 tctctctctctctGCAAATTCAAAACAGTGaaaaaaaCCTCTCTTCATTTTTTAACTCCc 77
||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 26 TCTCTTTCTCTCTGCAAATTCAAAACAGTGAAAAAAA---CTC-TC--TTTTTAA----- 74
Query 78 tctctctctctctctctATGGAGAGACGAACGAGACGAGTGAAGTTCACAGAGAATCGTA 137
||||||| | ||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 75 ---CTCTCTC-C-ATCTATGGAGAGACGAACGAGAAGAGTCAAGTTCACAGAGCATCGTA 129
Query 138 CGGTCACAAACGTAGCAGCTACACCATCTAACGGGTCTCCGAGACTGGTCCGTATCACTG 197
|||||||| |||||||||||| |||||| ||||| ||||| |||||||||||||||||||
Sbjct 130 CGGTCACACACGTAGCAGCTAAACCATCCAACGGCTCTCCAAGACTGGTCCGTATCACTG 189
Query 198 TTACTGATCCTTTCGCTACTGACTCGTCTAGCGACGACGACGACAACAACAACGTCACGG 257
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 190 TTACTGATCCTTTCGCTACTGACTCGTCTAGCGACGACGACG---ACAACAACGTCACGA 246
Query 258 TGGTTCCAAGAGTGAAACGATACGTGAAGGAGATTAGATTCTGCCAAGGTGAATCTTCTT 317
||| |||| ||||||||||||||||| |||||||||||||||| ||||||| | ||||
Sbjct 247 TGGCTCCACGAGTGAAACGATACGTGGAGGAGATTAGATTCTGTCAAGGTG-A--GTCTT 303
Query 318 CCTCCACCGCGGCGAGGAAAGGTAAGCACAAGGAGGAGGAAAGCGTAGTGGTTGAAGATG 377
| |||||||||||||| |||| ||||||||||| ||| |||||| ||||||| ||||
Sbjct 304 CGTCCACCGCGGCGAGAAAAGCTAAGCACAAGGCGGA-GAAAGC--CGTGGTTGTTGATG 360
Query 378 ACGTGTCGACGTCGGTGAAGCCTAAAAAGTACAGAGGCGTGAGACAGAGACCTTGGGGAA 437
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 ACGTGTCGACGTCGGTGAAGCCTAAGAAGTACAGAGGCGTGAGACAGAGACCTTGGGGAA 420
Query 438 AATTCGCGGCGGAGATTAGAGATCCGTCGAGCCGTACTCGGATTTGGCTTGGGACTTTTG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTCGCGGCGGAGATTAGAGATCCGTCGAGCCGTACTCGGATTTGGCTTGGGACTTTTG 480
Query 498 TCACGGCGGAGGAAGCTGCTATAGCGTACGATAGAGCCGCGATTCATCTCAAAGGACCTA 557
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 481 TCACGGCAGAGGAAGCTGCTATAGCTTACGATAGAGCCGCGATTCATCTCAAAGGACATA 540
Query 558 AAGCGCTCACGAATTTCCTAACTCCGCCGACG-C--C-A-----ACGCCGGTTATCGATC 608
|||| || |||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct 541 AAGCACTGACGAATTTTCTAACTCCGCCGACGACGACGACGCCGACGCCGGTTATCGATC 600
Query 609 TCCAAACGGTTTCCGCCTGCGATTACGGTAGAGATTCTCGGCAGAGCCTTCATTCACCGA 668
|||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| || |
Sbjct 601 TCCAAACGGTTTCCGCATGCGATTCCGGTAGAGATTCTCGCCAGAGCCTTCATTCTCCAA 660
Query 669 CCTCTGTTCTAAGATTCAACGTCAACGAGGAAACAGAGCATGAGATTGAAGCGATCGAGC 728
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 CCTCTGTTCTAAGATTCAACGTCAACGAGGAAACAGAGCATGAGATTGAACCGATCGAGC 720
Query 729 TATCTCCGGAGAGAAAGTCGACGGTTATAAAAGAAGAAGAAGAATCGTCGGCGGGTTTGG 788
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 721 TATCTCCGGAGAGAAAGTCGACGGTTTTAAAAGAAGAAGAAGAAACGTCGGCGAGTTTGG 780
Query 789 TGTTCCCGGATCCGTATCTGTTACCGGATTTATCTCTCGCCGGCGAATGTTTTTGGGATA 848
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TGTTCCCGGATCCGTATCTGTTACCGGATTTATCTCTCGCCGGCGAGTGTTTTTGGGATA 840
Query 849 CCGAAATTGCCCCTGACCTTTTGTTTCTCGATGAAGAAACCAAAATCCAATCAACGTTGT 908
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 841 CCGAAATTGCCCCTGACCTTCTGTTTCTCGATGAAGAAATCAAAATCCAATCAACGTT-- 898
Query 909 TACCAAACACAGAGGTTTCGAAACAAGGAGAAAACGAAACTGAAGATTTCGAGTTTGGTT 968
| ||||||||||| |||| |||||||||||||||||| ||||||||||| |||| | |
Sbjct 899 -AGCAAACACAGAGATTTCAAAACAAGGAGAAAACGAATCTGAAGATTTCTCGTTTAGCT 957
Query 969 TGATTGATGATTTCGAGTCTTCTCCATGGGATGTGGATCATTTCTTCGACCATCATCATC 1028
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 958 TGATTGATGATTTCGAGTCTTCTTCATGGGATGTGGATAATTTCTTCGACCATCATCGTC 1017
Query 1029 ACTCTTTCGATTAAAAATCTCTTCTTTTTTGGGGAAATTTTTGTGTGGTGATGATGACGT 1088
| || | | | | || ||| || ||||| ||||| |||||||||||||||||
Sbjct 1018 A-TCAT-C-ACT------CT-TTCGATTAAGGGGA--TTTTT-TGTGGTGATGATGACGT 1064
Query 1089 GGATACATCGTGACCGTCGGCTTACCTTTTTTAGTCTGAATGACGTGGACTGTTCAGATC 1148
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1065 GGATGCATCGTGACCGTCGGCTTACCGTTTT-AGTCTGAATGACGTGGACTGTTCAGATC 1123
Query 1149 AACTGAAGCGCAAACCCaaaaaaaCTAGGGTTTTGTTTTATTAATTTGTGGGTAAATATT 1208
||||||| ||| || || |||| ||||||||||||| |||||||||||||||||
Sbjct 1124 AACTGAA----AAA---AATAA--CTAGAGTTTTGTTTTATTTATTTGTGGGTAAATATT 1174
Query 1209 TTAGTTAAGAAGAAGATAAGTATGTTAA-TGTTTATCAAGGTTTGGACCTTTC--G--TT 1263
||||||||||||| |||||||||||| ||||||||||||||| ||||||| | ||
Sbjct 1175 TTAGTTAAGAAGA---TAAGTATGTTAAATGTTTATCAAGGTTTTGACCTTTTAAGACTT 1231
Query 1264 --GTTTT--GGTTCCTCTCTCTGAGATTGTCTCAACGGTAGGAAGCAGTATATAAATGTG 1319
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TCGTTTTTTGGTTCCTCACTCTGAGATTGTCTCAACGGTAGGAAGCAGTATATAAATGTG 1291
Query 1320 TTTCTATGTCTATAA 1334
||||| |||||||||
Sbjct 1292 TTTCTGTGTCTATAA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5