BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61640.1

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939220 jgi|Araly1|939220|scaffold_503411.1                        303    7e-82


> Ahg939220 jgi|Araly1|939220|scaffold_503411.1
Length=241

 Score =  303 bits (164),  Expect = 7e-82
 Identities = 183/192 (95%), Gaps = 1/192 (1%)
 Strand=Plus/Plus

Query  134  TCCGTTGCCGTAATCGCTTTATTCGCTTTCGTTTTCGCCGTCATCTCTCCATTCGCCGGC  193
            ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct  27   TCCGTTGCCGTAATCGCCTTCTTCGCTTTCGTTTTCGCCGCCATCTCTCCATTCGCCGGC  86

Query  194  GCTCAATCCTTAGCTCCTGCTCCTTCCCCCACTAGCGACGGAACATCGATTGATCAAGGA  253
            |||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct  87   GCTCAATCCTCAGCTCCTGCTCCTTCTCCCGCAAGCGACGGAACATCGATTGATCAAGGA  146

Query  254  ATCGCGTATTTGCTAATGGTGGTGGCGTTGGTGCTGACGTATCTCATTCATCCTCTTGAT  313
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  147  ATCGCGTATTTGCTAATGGTGGTGGCGTTGGTGCTGACGTATCTCATCCATCCTCTTGAT  206

Query  314  GCATC-TTCTTC  324
            ||||| ||||||
Sbjct  207  GCATCCTTCTTC  218



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21405285429


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5