BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61660.1

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486654 jgi|Araly1|486654|fgenesh2_kg.5__2646__AT3G61660.1         466    5e-131


> Ahg486654 jgi|Araly1|486654|fgenesh2_kg.5__2646__AT3G61660.1
Length=368

 Score =  466 bits (252),  Expect = 5e-131
 Identities = 347/389 (89%), Gaps = 21/389 (5%)
 Strand=Plus/Plus

Query  1    ATGGTTGATGATGATGATCGTATACTATGGGATTGTGGAAGTCCACTCTATGATTCCTAC  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTTGTTGATGATGATCGTATACTATGGGATTGTGGAAGTCCACTCTATGATTCCTAC  60

Query  61   GAGCTCGTTTCTCTTACTCACATCATTGAACGCCATTTCATGTCTCTACCTTCTCTTGCT  120
            |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct  61   GAGCTCGTCTCTCTTACTCACATCATCGAACGCCATTTCATGTCTCTCCCTTCTCTTGCC  120

Query  121  GGCGCCGGAAAAGTTTGCTGCTCTCGAAGACCGTCTGATCTGGAAGAAAAGGCCAATCGT  180
            |||||||||||||||||||| ||||||  ||||||||||||||  ||||  |||||||| 
Sbjct  121  GGCGCCGGAAAAGTTTGCTGTTCTCGATCACCGTCTGATCTGGGGGAAATTGCCAATCGC  180

Query  181  GGGGCCAACACCGTCGTTGATCTGTGTTGTTCCTCTGATTCGACGACTGGTAAACTGTTG  240
            | ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  181  GCGGCCAGCACCGTCGTTGATCTGTGTTGTTCCTCTGATTCGACGACTGGTAAATTATTG  240

Query  241  TGCGGTGCTTTTGGAACCAAATGGTGGAAGAGAAAGCAAAACACCGAAGCTGTCGTCGAT  300
            |||||||||||||||||||||||||||||||||||| |||| ||  |  |   ||   | 
Sbjct  241  TGCGGTGCTTTTGGAACCAAATGGTGGAAGAGAAAG-AAAA-AC--A--C---CG---A-  287

Query  301  AATTACAACAACAAGAAGAAGAATATGTTTTGTCGGATCCTCTCTAAGATAAGGATTTCT  360
                 ||| || |||||||||| |  ||||||||||||| ||||||||||||||||| ||
Sbjct  288  -----CAAGAAGAAGAAGAAGA-T--GTTTTGTCGGATCTTCTCTAAGATAAGGATTCCT  339

Query  361  ACAACAAGATCTGGTTCTTCGAAGATGTG  389
            |||||||||||||||||||||||||||||
Sbjct  340  ACAACAAGATCTGGTTCTTCGAAGATGTG  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13964945574


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5