BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61670.1
Length=2873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486655 jgi|Araly1|486655|fgenesh2_kg.5__2647__AT3G61670.1 3711 0.0
Ahg939228 jgi|Araly1|939228|scaffold_503419.1 994 0.0
Ahg483793 jgi|Araly1|483793|fgenesh2_kg.4__2853__AT2G46380.1 444 2e-123
> Ahg486655 jgi|Araly1|486655|fgenesh2_kg.5__2647__AT3G61670.1
Length=2615
Score = 3711 bits (2009), Expect = 0.0
Identities = 2366/2528 (94%), Gaps = 65/2528 (3%)
Strand=Plus/Plus
Query 175 CAGACAGCGTTTTCCTCTGTCCTTT-GCTCTTTGTGGGTTTACTCCTTCTTCCGGTTTGG 233
|||| ||| ||||||||||| |||| |||||||||| || |||||| |||||||||||
Sbjct 119 CAGATAGCATTTTCCTCTGT-CTTTGGCTCTTTGTGAACTT-CTCCTTATTCCGGTTTGG 176
Query 234 ATATCCCGAG-----CTAG-T-----AAAGAAGGGATCCAGTAGCAGAAGCTGAAGCTAA 282
| ||||||| |||| | ||||||||||||||||||||||| | |||||
Sbjct 177 GTTTCCCGAGAAAATCTAGCTAGAAAAAAGAAGGGATCCAGTAGCAGAACCAGAAGC--- 233
Query 283 TAAACCCAATCATAGAGAAAGCTCTCTG-AACAAAAGACATTTTCTGGGTTTGTTTTAAT 341
|||||||||||| ||||||||||||||| ||| |||| ||||||||||| | ||||||
Sbjct 234 TAAACCCAATCAAAGAGAAAGCTCTCTGAAAC-TCAGACGTTTTCTGGGTTCG-TTTAAT 291
Query 342 TAAAAAGAAATGGCCGATTCGACCAAAGTAAGGCTAGTTCGTTGCCCAAAATGCGAGAAT 401
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGAAAAGAAATGGCTGATTCAACCAAAGTAAGGCTAGTTCGTTGCCCAAAATGCGAGAAT 351
Query 402 CTCTTATCAGAGCCTGAAGATTCTCCCTTTTTCCAGTGCGGTGGCTGCTTCACCGTTCTT 461
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 352 CTCTTATCAGAGCCTGAAGATTCCCCCTTTTTCCAGTGTGGTGGCTGCTTCACCGTTCTT 411
Query 462 CGTGCCAAAACCAAGGAGCGTGAAGCAGATTCTGTTTCAGTCAAGTCCGTTGAAGATACA 521
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 412 CGTGCCAAAATCAAGGAGCGTGAAGCAGATTCTGTTTCAGTCAAGTCCGTTGAAGATAAA 471
Query 522 GCCAAACCGGTTTCAG---------CTAGTTCCCCAGAGAAAGCAATAT-TGGATTCTAG 571
|||||||| |||||| |||||||||||||||||||||| | ||||||||||
Sbjct 472 GCCAAACCAATTTCAGCTAACTCTACTAGTTCCCCAGAGAAAGCAAT-TGTGGATTCTAG 530
Query 572 TGAAACTTCATCTGACTCTGATGTTCCATCTTTGAGACACCACCATAATGTTGTTCCTGT 631
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 531 TGAAACTTCATCTGACTCTGATGTTCCATCTTTGAGACACCACCAAAATGTTGTTCCTGT 590
Query 632 TGATGTTGAGAGTGATCCTTGTTCAAAACCTTCTTCTCTTGAACAAGGTAACAGATCTAT 691
||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 591 TGATGTTGAGAGTGATCCTGGTTCAAAA------------GAACAAGGTAACAGATC--T 636
Query 692 ATTATTAGGGGATAAAGATGACCTTAAATCTCAATCAGGGAGACAACAAGATTCGGGTTG 751
| |||||||||||||||||||||||||||||||||| ||| || |||||| || ||||
Sbjct 637 A-TATTAGGGGATAAAGATGACCTTAAATCTCAATC-GGG-GA-GACAAGACTCTGGTTT 692
Query 752 GGATCGGTTTAGGAAAAGAACAACCAAGAGATGTGATTCTCAAAGTGTCATCAACAGATT 811
||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 693 GGATCGGTTAAGGAAAAGAACAACTAAGAGATGTGATTCTGAAAGTGTCATCAACAGATT 752
Query 812 ATCCACTTCTAGGCATCCTTGTGATGAAGGCACTTCTTCTTCAGCAAACTACTTTCCAGA 871
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 753 ATCCACTTCAAGGCATCCTTGTGATGAAGGCACTTCTTCTTCAGCTAACTACTTTCCAGA 812
Query 872 TTCACTCCTTGAATTCCAGAAACACTTGAAAGATCAGAGCAACGAAGCAATTGAGCAAGA 931
|||||||| ||| ||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 813 TTCACTCCATGAGTTCCAGAAACATTTGAAAGACCAGAGCAATGAAGCAATCGAGCAAGA 872
Query 932 CCGAGCTGGACTTCTGAGACAGTTAGAAAAGATCAAAGAACAGCTTGTTCAGTCTTGCAA 991
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 873 CCGAGCTGGACTTCTGAGACAGTTAGAAAAGATCAAAGAACAGCTTGTTCTGTCTTGCAA 932
Query 992 TGTGGCAACTGACAAGTCTAAAGAACAGGCTCCTAGTTCTTCGTCCGCCTCGGGGTTGAA 1051
|||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 933 TGTGGCGACTGACAAGTCTAAAGAACAGGTTTCTAGTTTTTCGTCCGCCTCGGGGTTGAA 992
Query 1052 CAAGGCGCCTCCAATGCGGTTTCACAGTACAGGAAATCACGCTGTTGGAGGTCCTTCTTA 1111
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 993 CAAGGCGCCTCCAATGCAGTTTCACAGTACGGGAAATCACGCTGTTGGAGGTCCTTCTTA 1052
Query 1112 TTACCATC-A-A-CC---A---CAGTTTCCTTACAACAACAACAACATCAATGAAGCCCC 1162
|||||||| | | || | ||||||||||||||||||||| | | |||||||| |||
Sbjct 1053 TTACCATCAACATCCTGAACCGCAGTTTCCTTACAACAACAAC-A-A-CAATGAAGTCCC 1109
Query 1163 TATGCACCACAGTCTGATGCATCCCTCTTATGGAGACCCTCATAGGTTCCCGATACACGG 1222
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1110 TATGCACCATAGTCTGATGCATCCCTCTTATGGAGACACTCATAGGTTCCCTATACACGG 1169
Query 1223 AAGAGGTCCTCATCCCTACTTCTCGGGACAATATGTTGGTAATAATAACAACGGTCATGA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 AAGAGGTCCTCATCCCTACTTCTCGGGACAATATGTTGGTAATAATAACAACGGTCATGA 1229
Query 1283 TCTCTTTGACGCATACCCGCAGCAAAACGGGCATTTTCATCACTCATCTTGCTCTTGTTA 1342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CCTCTTTGACGCATACCCGCAGCAAAACGGGCATTTTCATCACTCATCTTGCTCTTGTTA 1289
Query 1343 CCACTGTTATGATAATAAATACTGGCGAGGTTCAGCACCGGTGGTCCCTGATGCACCCTA 1402
||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1290 CCAGTGTTATGATAATAAATACTGGCGAGGTCCAGCACCGGTGATCCCTGATGCACCCTA 1349
Query 1403 TAATGCTGGTTTTTATCCTCATGAGAGCGTTATGGGTTTTGCTCCACCGCATAATCCTAG 1462
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1350 TAACGCCGGTTTTTATCCTCATGAGAGCGTTATGGGTTTTGCTCCACCGCATAATCCAAG 1409
Query 1463 AACTTATGGTTCTCGTGGTCTACAGCCTCATGGAAGATGGCCTAGTAACTTCAGTGATGC 1522
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1410 AACTTATGGTTCTCGTGGTCTACAGCCTCATGGCAGATGGCCTAGTAACTTCAGTGATGC 1469
Query 1523 TCAAATGGA-TGCTCTTTCTCGGATTCGTCCTCCTAAAGTTGTATTATCAGGCGGATCTC 1581
||||||||| | ||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1470 TCAAATGGACT-CTCTTTCGCGGATACGTCCTCCTAAAGTTGTATTATCAGGTGGATCTC 1528
Query 1582 GTCATATCCGCCCTTTGGCAGGTGGTGCACCGTTTATAACCTGTCAAAACTGCTTTGAGC 1641
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1529 GTCATATCCGCCCTTTGGCAGGTGGTGCTCCGTTTATAACCTGTCAAAACTGTTTTGAGC 1588
Query 1642 TTCTACAATTGCCAAAGAAACCAGAGGCTGGTACAAAGAAACAACAGAAAGTGCGGTGTG 1701
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1589 TTCTACAATTGCCAAAGAAACCAGAGGCTGGTACAAAAAAACAGCAGAAAGTGCGATGTG 1648
Query 1702 GAGCATGTTCCTGTTTGATAGATTTATCTGTTGTTAATAACAAATTCGTTCTCTCGACAA 1761
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 GAGCATGCTCTTGTTTGATAGATTTATCTGTTGTTAATAACAAATTCGTTCTCTCGACAA 1708
Query 1762 ACACAGCTTCAACGAGACAAGGAGAAGCCCGTGTAGCTGCTGATTACACTTCTGATGACT 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 ACACAGCTTCAACGAGACAAGGAGAAGCCCGTGTAGCTGCTGATTACACTTCTGATGACT 1768
Query 1822 ATGATCTTCTTGGTTATGTATTTCACTCGTTGGATGATGAACCAAGAGATCTTCCGGGAT 1881
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1769 ATGATCTTCTTGGTTATGTGTTTCATTCGTTGGATGATGAACCAAGAGATCTTCCAGGAT 1828
Query 1882 TGATTTCAGACAAGTCTCAAGATATGCAACACGTTCATTCTCATTCCGCCAGCCTTTCCG 1941
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1829 TGATTTCAGACAAGTCTCAAGATATGCAGCACGTTCATTCTCATTCCGCTAGCCTTTCCG 1888
Query 1942 AGGGA-GAGCTAAGCTCAGACAGTCTAACCGCTAAGCCACTAGCTGAAGCTCACGAAAAC 2000
||| | ||||||||||||||||||||||| ||||||||||||||| ||||||| || |||
Sbjct 1889 AGG-ACGAGCTAAGCTCAGACAGTCTAACAGCTAAGCCACTAGCTCAAGCTCAAGATAAC 1947
Query 2001 TTTGTTGATTACTCTTCGATCAATCATGACCGGTCTGGAGCAGGCAGCCGTAGCTCTCGT 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 TTTGTTGATTACTCTTCGATCAATCATGACCGGTCTGGAGCAGGCAGCCGTAGCTCTCGT 2007
Query 2061 TCAGAACACGACAAGGTCACACTGAGCAAGGCAACAGCCATGAGACAGAACTCCATGAAA 2120
|| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 2008 TCGGAACACGACAAGGTCACACTGAGCAAGACGACAGCTATGAGACAGAACTCCATGAAA 2067
Query 2121 GAGGTTTCACTTGCAAGTGAGATGGAAGTTAACTTCAACGACTACTCTCATCGTAACAGT 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 GAGGTTTCACTTGCAAGTGAGATGGAAGTTAACTTCAACGACTACTCTCATCGTAACAGT 2127
Query 2181 GGAGTATCTAAAGATCAGCAGCAAAGAGCTAAGAAGAGCGGATTCGCGAGCATTGTGAAG 2240
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 2128 GGAGTATCTAAAGATCAGCAGCAAAGAGCCAAGAAGAGCGGATTTGCAAGCATTGTGAAG 2187
Query 2241 AAAAGCTTCAAAGATCTGACAAAATCTATTCAGAATGATGAAGGGAACAAAAGCAATGTT 2300
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2188 AAAAGCTTCAAGGATCTGACAAAATCTATTCAGAATGATGAAGGGAATAAAAGCAATGTT 2247
Query 2301 TCGATAAATGGACATCCTTTAACCGAACGTCTGCTGAGAAAAGCAGAGAAGCAAGCCGGA 2360
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2248 TCGATAAATGGACATCCTTTAACAGAACGTCTGCTGAGAAAAGCTGAGAAGCAAGCCGGA 2307
Query 2361 GTCATTCAGCCAGGAAACTACTGGTATGATTACAGAGCTGGATTCTGGGGAGTAATGGGA 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 GTCATTCAGCCAGGAAACTACTGGTATGATTACAGAGCTGGATTCTGGGGAGTAATGGGA 2367
Query 2421 GGTCCAGGTCTTGGAATATTACCGCCATTCATAGAAGAGCTTAATTACCCAATGCCAGAG 2480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2368 GGTCCAGGTCTTGGAATATTACCGCCATTCATAGAAGAGCTTAACTACCCAATGCCAGAG 2427
Query 2481 AACTGCTCAGGTGGAACAACGGGAGTGTTTGTGAACGGAAGAGAGCTTCACCGGAAAGAT 2540
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2428 AACTGCTCAGGTGGAACCACGGGAGTGTTTGTCAACGGGAGAGAGCTTCACCGGAAAGAT 2487
Query 2541 TTGGACTTGCTTGCGGGTAGAGGACTTCCTCCGGACAGAGATAGATCCTACATTGTTGAC 2600
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2488 TTGGACTTGCTTGCGGGTAGAGGACTTCCTCCAGACAGAGATAGATCATACATTGTTGAC 2547
Query 2601 ATAACGGGTAGAGTCATAGATGAAGACACCGGTGAAGAGCTCGATTGCCTCGGGAAACTA 2660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2548 ATCACGGGTAGAGTCATAGATGAAGACACCGGTGAAGAGCTCGATTGCCTCGGGAAACTA 2607
Query 2661 GCCCCAAC 2668
||||||||
Sbjct 2608 GCCCCAAC 2615
Score = 152 bits (82), Expect = 1e-35
Identities = 111/124 (90%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 3 AAAGGAGCGAAATTTGCAGAAGAAACAAAGCATAACCCCCCAGAGAAAGAGAGAGAGTTT 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAGGAGCGAAATTTGCAGAAGAAACAAAGCATAACCCCCCAGAGAAAGAT------TTT 54
Query 63 CTCCCAACAAGATCAAACTTCGAACTCTACGAGAACTACTATTATCCAAAACGCGAAATA 122
|||||||||||| |||||||||||||| ||||||||||| |||| ||||||| ||||||
Sbjct 55 CTCCCAACAAGACCAAACTTCGAACTCCACGAGAACTACCATTAACCAAAACTAGAAATA 114
Query 123 GAGA 126
||||
Sbjct 115 GAGA 118
> Ahg939228 jgi|Araly1|939228|scaffold_503419.1
Length=932
Score = 994 bits (538), Expect = 0.0
Identities = 617/652 (95%), Gaps = 18/652 (3%)
Strand=Plus/Plus
Query 1811 TTCTGATGACTATGATCTTCTTGGTTATGTATTTCACTCGTTGGATGATGAACCAAGAGA 1870
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 245 TTCTGATGACTATGATCTTCTTGGTTATGTGTTTCATTCGTTGGATGATGAACCAAGAGA 304
Query 1871 TCTTCCGGGATTGATTTCAGACAAGTCTCAAGATATGCAACACGTTCATTCTCATTCCGC 1930
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 305 TCTTCCGGGATTGATTTCAGACAAGTCTCAAGATATGCAACACGTTCATTCTCATTTCGC 364
Query 1931 CAGCCTTTCCGAGGGAGAGCTAAGCTCAGACAGTCTAACCGCTAAGCCACTAGCTGAAGC 1990
|||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 365 CAGCCTTTCCAAGGGCGAGCTAAGCTCAGACAGTCTAACAGCTAAGCCACTAGCTCAAGC 424
Query 1991 TC---A--CG--------A-A-AACTTTGTTGATTACTCTTCGATCAATCATGACCGGTC 2035
|| | || | | ||||||||||||||||||||||||||||| ||||||||
Sbjct 425 TCAAGATTCGCCTCTTCAAGATAACTTTGTTGATTACTCTTCGATCAATCACGACCGGTC 484
Query 2036 TGGAGCAGGCAGCCGTAGCTCTCGTTCAGAACACGACAAGGTCACACTGAGCAAGGCAAC 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 485 TGGAGCAGGCAGCCGTAGCTCTCGTTCAGAACACGACAAGGTCACACTGAGCAAGACGAC 544
Query 2096 AGCCATGAGACAGAA---CTCCATGAAAGAGGTTTCACTTGCAAGTGAGATGGAAGTTAA 2152
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 545 AGCTATGAGACAGAACTCCTCCATAAAAGAGGTTTCACTTGCAAGTGAGATGGAAGTTAA 604
Query 2153 CTTCAACGACTACTCTCATCGTAACAGTGGAGTATCTAAAGATCAGCAGCAAAGAGCTAA 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 605 CTTCAACGACTACTCTCATCGTAACAGTGGAGTATCTAAAGATCAGCAGCAAAGAGCCAA 664
Query 2213 GAAGAGCGGATTCGCGAGCATTGTGAAGAAAAGCTTCAAAGATCTGACAAAATCTATTCA 2272
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 665 GAAGAGCGGATTCGCAAGCATTGTGAAGAAAAGCTTCAAGGATCTGACAAAATCTATTCA 724
Query 2273 GAATGATGAAGGGAACAAAAGCAATGTTTCGATAAATGGACATCCTTTAACCGAACGTCT 2332
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 725 GAATGATGAAGGGAACAAAAGCAAGGTTTCGATAAATGGACATCCTTTAACAGAACGTCT 784
Query 2333 GCTGAGAAAAGCAGAGAAGCAAGCCGGAGTCATTCAGCCAGGAAACTACTGGTATGATTA 2392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GCTGAGAAAAGCAGAGAAGCAAGCCGGAGTCATTCAGCCAGGAAACTACTGGTATGATTA 844
Query 2393 CAGAGCTGGATTCTGGGGAGTAATGGGAGGTCCAGGTCTTGGAATATTACCG 2444
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CAGAGCTGGATTCTGGGGAGTAATGGGAGGTCCAGGTCTTGGAATATTACCG 896
> Ahg483793 jgi|Araly1|483793|fgenesh2_kg.4__2853__AT2G46380.1
Length=2570
Score = 444 bits (240), Expect = 2e-123
Identities = 590/752 (78%), Gaps = 51/752 (7%)
Strand=Plus/Plus
Query 2005 TTGATTACTCTTCGATCAA--TCA-TGACCGGTCTGGAG-C-AGGCAGCCGTAGCTCTCG 2059
|||| |||||||||||||| | | ||||||||||| | | ||| ||||| ||||||||
Sbjct 1680 TTGAATACTCTTCGATCAATGTAAGGGACCGGTCTGG-GCCAAGG-AGCCGAAGCTCTCG 1737
Query 2060 TTCAGAACACGACAAGGTCACACTGAGCAAGGCAACAGCCATGAGACAGAACTCCATGAA 2119
|||||||| |||| ||||||||||||||| |||| |||||||||||||||| |||||
Sbjct 1738 TTCAGAACGGGACAGGGTCACACTGAGCAA---AACATCCATGAGACAGAACTCTATGAA 1794
Query 2120 AGAGGTTTCACTTGCAAGTGAGATGGAAGTTAACTTCAACGACTACTCTCATC-GT-AAC 2177
||| | |||| |||||| ||||||||| ||||| | || ||| ||| || | | ||
Sbjct 1795 AGAAGCTTCAGTTGCAATTGAGATGGACGTTAA--T-GACTACT-CTCACAACAATGAAG 1850
Query 2178 AGT-GGAGTA-TCT--AAA-G---AT-CAGCA-G--C-A--AAGAGCTAAGAAGAGCGGA 2222
|| || | ||| ||| | || ||| | | | | |||| | |||||| || ||
Sbjct 1851 TGTCTCAGGATTCTGCAAATGACTATACAG-ATGATCAAGGAAGAACCAAGAAGGGCAGA 1909
Query 2223 TTCGCGAGCATTGTGAAGAAAAGCTTCAAAGATCTGACA-AAATCTATTCAGAATGATGA 2281
|| ||||| || |||||||| |||||||| ||||||| | ||||| || ||| | | ||
Sbjct 1910 TTTGCGAGTATCGTGAAGAATAGCTTCAAGGATCTGA-AGAAATCCATACAG-A--ACGA 1965
Query 2282 AGGGAACAAAAGCAATGTTTCGATAAATGGACATCCTTTAACCGAACGTCTGCTGAGAAA 2341
| || || ||| |||| || |||||||| |||||| || | |||||||| ||| |||
Sbjct 1966 A-GG--CAGAAGTGATGTCTCAATAAATGGGCATCCTGTAGCTGAACGTCTTATGA-AAA 2021
Query 2342 -AGCAGAGAAGCAAGCCGGAGTCATTCAG-CCAGGAAACTACTGGTATGATTACAGAGCT 2399
||||||||||| || ||| || || | ||||||||||||||||| || |||||||||
Sbjct 2022 TGGCAGAGAAGCAGGCTGGA-CCAATCCGACCAGGAAACTACTGGTACGACTACAGAGCT 2080
Query 2400 GGATTCTGGGGAGTAATGGGAGGTCCAG-GTCTTGGAATATTACCGCCATTCATAGAAGA 2458
||||||||||||||||||||| ||| | | ||||||||||||||||| ||||| |||||
Sbjct 2081 GGATTCTGGGGAGTAATGGGAAGTC-ATTGCCTTGGAATATTACCGCCTTTCATTGAAGA 2139
Query 2459 GCTTAATTACCCAATGCCAGAGAACTGCTCAGGTGGAACAACG-GGAGTGTTTGTGAACG 2517
||| |||||||||||||||||||| ||| | || ||||| || || || ||||||||||
Sbjct 2140 GCTCAATTACCCAATGCCAGAGAATTGCGCTGGCGGAACCACAAGG-GTCTTTGTGAACG 2198
Query 2518 GAAGAGAGCTTCACCGGAAAGATTTG-GACTTGCTTGCGGGTAGAGGACTTCCTCCGGAC 2576
||||||||||||||| |||||| || | || ||| | | ||||| || || | |||
Sbjct 2199 GAAGAGAGCTTCACCAGAAAGACCTGCGCCT-GCTCACTGCCAGAGGTCTCCCACGGGAT 2257
Query 2577 AGAGATAGATCCTACATTGTTGACATAACGGGTAGAGTCATAGATGAAGACACCGGTGAA 2636
||||| |||| || | |||| |||| | |||||||||||||| ||||| |||||||||
Sbjct 2258 GGAGATCGATCGTATACTGTTTACATCTCAGGTAGAGTCATAGACGAAGATACCGGTGAA 2317
Query 2637 GAGCTCGATTGCCTCGGGAAACTAGCCCCAACGATTGAGAAATTGAAGCGTGGGTTTGGG 2696
||||| ||| | || || ||||| ||||||||| | || || | |||||||||||||||
Sbjct 2318 GAGCTAGATAGTCTTGGCAAACTCGCCCCAACGGTCGATAAGCTAAAGCGTGGGTTTGGG 2377
Query 2697 ATGAGACTTCCAAAGAGAACTACGTGAAAGAA 2728
|||||| |||| | |||| || | |||| |||
Sbjct 2378 ATGAGAGTTCCGAGGAGAGCTGCATGAA-GAA 2408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108442927515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5