BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61680.1
Length=2374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486656 jgi|Araly1|486656|fgenesh2_kg.5__2648__AT3G61680.1 3624 0.0
> Ahg486656 jgi|Araly1|486656|fgenesh2_kg.5__2648__AT3G61680.1
Length=2373
Score = 3624 bits (1962), Expect = 0.0
Identities = 2255/2392 (94%), Gaps = 37/2392 (2%)
Strand=Plus/Plus
Query 1 CGTATATATTAATCTGGC-TCCATCTACATCTGTG-AA-agagagagagagaTTCATGAA 57
|||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||
Sbjct 1 CGTATATATTAATCTGGCTTGCATCTACATCTGTGAAAGAGAGAGAGAGAGATTCATGAA 60
Query 58 TCTTTTTACAGAAACACGAACAAGTTTCAGAATCTGGTCTGACTCTTTGTAACCTTCTCG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTTTTTACAGAAACACGAACAAGTTTCAGAATCTGGTCTGACTCTTTGTAACCTTCCCG 120
Query 118 TTTAAGATTCATTGTACGTATTCAAATCTACATTTCTTTGCCATTGTTGGAATCTCCGCC 177
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTAAGATTCATCATACGTATTCAAATCTCCATTTCTTTGCCATTGTTGGAATCTCCGCC 180
Query 178 TCGATCGTTTCTTA-TCAAAGGATCTGGTATTCGATTTTTGCTATCGTTTCAAAGCATGG 236
|||||||||| ||| | |||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 181 TCGATCGTTTGTTATTAAAAGGATCTGGTATTCGACTTTTGTTATCG-TTCAAAGCATGG 239
Query 237 TCTAATGATGATCCTGATCTCCGACTGATCCAATAACGGTTAAGCAACGCTGTTTTTGAT 296
||| | ||||||| ||||||||| ||||||| ||||||||| ||| ||| ||||||||
Sbjct 240 TCTGACGATGATCATGATCTCCGGCTGATCC---AACGGTTAAACAAAGCTATTTTTGAT 296
Query 297 CCTCCATTGTTGTTTGCCATCGATCAACACTCAGAAATAAGTTGGAGTTTTGTTCATAAA 356
|||||| ||| | | ||||||||||||||||||| ||||||||||||||||||
Sbjct 297 CCTCCA---TTG--T----T--ATCAACACTCAGAAATAAGGTGGAGTTTTGTTCATAAA 345
Query 357 GAATGGCGTTTAATACGGCTATGGCGTCTACATCTCCAGCGGCGGCAAATGACGTTTTAA 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 346 GAATGGCGTTTAATACGGCTATGGCGTCTACATCTCCAGCGGCAGCAAATGACGTTTTAA 405
Query 417 GAGAACATATTGGCCTCCGTAGATCGTTGTCCGGTCAAGATCTCGTCTTAAAAGGCGGTG 476
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 406 GAGAACATATTGGCCTCCGTAGATCGTTGTCCGGGCAAGATCTCGTCGTGAAAGGCGGTG 465
Query 477 GTATACGGAGATCGAGTTCCGACAATCACTTGTGTTGTCGCTCCGGTAATAATAATAATC 536
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 466 GTATACGAAGATCGAGTTCCGACAATCACTTGTGTTGTCGCTCTGGTAATAATAATCA-- 523
Query 537 GCATTCTTGCTGTGTCTGTTCGTCCGGGGATGAAAACGAGTCGATCTGTGGGAGTGTTCT 596
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 524 G-ATTCTTGCTGTGTCTGTACGTCCAGGGATGAAAACGAGTCGATCTGTGGGAATGTTCT 582
Query 597 CGTTTCAGATATCGAGTTCTATAATCCCAAGTCCGATAAAAACGTTGCTATTTGAAACGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CGTTTCAGATATCGAGTTCTATAATCCCAAGTCCGATAAAAACGTTGCTATTTGAAACGG 642
Query 657 ACACGTCTCAAGACGAGCAAGAGAGCGATGAGATTGAGATTGAGACAGAGCCAAATCTAG 716
||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 643 ACACGTCTCAAGACGAGAAAGAGATCGATGAGATTGAGATTGAGACTGAGCCAAATCTAG 702
Query 717 ATGGAGCCAAGAAGGCAAATTGGGTCGAGAGGCTGCTTGAGATAAGGAGACAGTGGAAGA 776
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 703 ATGGAGCCAAAAAGGCAAATTGGGTCGAGAGGTTGCTTGAGATAAGGAGACAGTGGAAGA 762
Query 777 GAGAGCAAAAAACAGAGAGTGGAAACAGTGACGTTGCAGAGGAAAGTGTTGACGTTACGT 836
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 763 AAGAGCAAAGAACAGAGAGTGGAAACGGTGACGTTGCAGAGGAAAGTGTTGATGTTACCT 822
Query 837 GTGGTTGTG-A-A-GAAGAAGAAGGTTGCATTGCGAATTACGGATCTGTA-AATGGTGAT 892
||||||||| | | ||||||||||||||||||||||||||||| |||| | || ||||||
Sbjct 823 GTGGTTGTGAAGACGAAGAAGAAGGTTGCATTGCGAATTACGGGTCTG-AGAACGGTGAT 881
Query 893 TGGGGACGAGAATCGTTCTCTAGATTGCTTGTGAAGGTTTCTTGGTCTGAGGCTAAAAAG 952
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TGGGGACGCGAATCGTTCTCTAGATTGCTTGTGAAGGTTTCTTGGTCTGAGGCTAAAAAG 941
Query 953 CTTTCTCAGTTAGCTTATTTGTGTAACTTGGCTTACACGATACCTGAGATCAAGGGTGAG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CTTTCTCAGTTAGCTTATTTGTGTAACTTGGCTTACACGATACCTGAGATCAAGGGTGAG 1001
Query 1013 GATTTGAGAAGAAACTATGGGTTAAAGTTTGTGACATCTTCATTGGAAAAGAAAGCTAAA 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1002 GATTTGAGAAGAAACTATGGGTTAAAGTTTGTGACATCTTCATTGGAAAAGAAAGCGAAA 1061
Query 1073 GCAGCGATACTTAGAGAGAAACTAGAGCAAGATCCAACACATGTCCCTGTTATTACATCC 1132
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1062 GCAGCCATACTTAGAGAGAAACTAGAGCAAGATCCAACACGTGTTCCTGTTATTACATCT 1121
Query 1133 CCGGATTTAGAATCCGAGAAGCAGTCTCAACGATCAGCTTCATCTTCTGCTTCTGCTTAC 1192
|| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1122 CCAGAATTAGAATCCGAGAAGCAGCCTCAACGATCAGCTTCATCTTCTGCTTCTGCTTAC 1181
Query 1193 AAGATTGCTGCTTCAGCTGCGTCTTACATTCACTCTTGCAAAGAGTATGATCTTTCAGAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AAGATTGCTGCTTCAGCTGCGTCTTACATTCACTCTTGCAAAGAGTATGATCTTTCAGAA 1241
Query 1253 -C---CAA-----TTTATAAATCAGCTGCTGCTGCTCAGGCTGCAGCGTCTACCATGACC 1303
| ||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1242 TCGAGCAACCCGGTTTATAAATCAGCTGCTGCTGCTCAGGCGGCAGCGTCTACGATGACA 1301
Query 1304 GCGGTGGTTGCTGCGGGTGAGGAGGAGAAGCTAGAAGCGGCAAGGGAGTTACAGTCGCTA 1363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GCCGTGGTTGCTGCGGGTGAGGAGGAGAAGCTAGAAGCGGCAAGGGAGTTACAGTCGCTA 1361
Query 1364 CAATCATCTCCTTGTGAGTGGTTTGTTTGTGATGATCCAAACACATACACTAGGTGCTTT 1423
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1362 CAATCATCTCCTTGTGAGTGGTTTGTTTGCGACGATCCAAACACATACACTAGGTGCTTT 1421
Query 1424 GTGATTCAGGGATCTGATTCTTTAGCTTCTTGGAAAGCAAACCTTTTCTTCGAGCCAACT 1483
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 1422 GTGATTCAGGGATCTGATTCTTTAGCTTCTTGGAAAGCAAACCTCTTCTTTGAGCCAGCT 1481
Query 1484 AAGTTTGAGGACACAGATGTATTAGTCCACAGAGGAATCTACGAGGCAGCAAAAGGAATA 1543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AAGTTTGAGGAAACAGATGTATTAGTCCACAGAGGAATCTACGAGGCAGCAAAAGGAATA 1541
Query 1544 TACGAACAGTTCTTACCAGAAATAACAGAGCATTTGTCTAGACATGGAGATAGAGCTAAG 1603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1542 TACGAACAGTTCTTACCAGAAATAACAGAGCATTTGTCTAGACACGGAGATAGAGCTAAG 1601
Query 1604 TTTCAGTTCACGGGTCATTCTCTTGGAGGCAGTCTCTCATTAATAGTGAATTTGATGCTT 1663
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1602 TTTCAGTTTACGGGTCATTCTCTTGGAGGCAGTCTTTCATTAATAGTGAATTTGATGCTT 1661
Query 1664 ATCTCTAGAGGACTCGTTAGCTCTGAAGCTATGAAATCCGTTGTCACGTTCGGTTCACCG 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ATCTCTAGAGGACTCGTTAGCTCTGAAGCTATGAAATCCGTTGTCACGTTCGGTTCACCG 1721
Query 1724 TTTGTGTTTTGTGGTGGTGAGAAGATTCTAGCGGAGCTTGGTCTTGACGAGAGTCATGTT 1783
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1722 TTTGTGTTTTGTGGCGGTGAGAAGATTCTAGCTGAGCTTGGCCTTGACGAGAGTCATGTT 1781
Query 1784 CACTGTGTGATGATGCATAGAGATATCGTCCCACGAGCCTTTTCGTGTAATTATCCTGAC 1843
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1782 CACTGTGTGATGATGCATAGAGATATCGTCCCACGAGCCTTCTCGTGTAATTATCCTGAC 1841
Query 1844 CATGTTGCTCTCGTTCTCAAGCGTTTGAATGGCTCCTTCCGTACACATCCTTGTCTCAAC 1903
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1842 CATGTTGCTCTCGTTCTCAAGCGTTTGAATGGGTCTTTCCGTACACATCCTTGTCTCAAC 1901
Query 1904 AAAAATAAACTGTTGTATTCACCGATGGGGAAAGTATATATTCTACAGCCGAGTGAGAGC 1963
||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1902 AAAAACAAACTGTTGTATTCACCGATGGGGAAAGTTTTTATTCTACAGCCGAGTGAGAGC 1961
Query 1964 GTCTCGCCGACGCACCCATGGCTTCCACCGGGAAACGCTCTGTACATTTTAGAAAATAGC 2023
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||
Sbjct 1962 GTCTCGCCGACGCACCCTTGGCTACCACCGGGTAACGCTCTCTACATTTTAGAAAAGAGC 2021
Query 2024 AACGAAGGTTACTCTCCTACGGCGTTACGAGCATTTTTAAACCGCCCTCACCCGCTCGAA 2083
|| |||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 2022 AATGAAGGTTACTCTCCTACGGCGTTACGTGCGTTTTTGAACCGCCCTCACCCTCTCGAA 2081
Query 2084 ACGCTGAGTCAACGCGCAGCTTATGGCTCGGAAGGTTCAGTCTTGAGGGACCACGACTCC 2143
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 2082 ACACTGAGTCAACGCGCAGCTTATGGCTCGGAAGGTTCGGTCTTGAGGGATCACGATTCC 2141
Query 2144 AAGAACTACGTTAAGGCCGTGAACGGAGTTCTCAGGCAGCACACGAAGCTCATAGTTAGG 2203
|| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2142 AAAAACTACGTCAAAGCCGTGAACGGAGTTCTCAGGCAACACACGAAGCTCATAGTTAGG 2201
Query 2204 AAAGCCAGGATACAAAGGAGGAGTGTTTGGCCCGTGCTGACATCAGCAGGACGTGGATTA 2263
|||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 2202 AAAGCCAGGATACAGAGGAGGAGTGTTTGGCCGGTGCTGACGTCAGCAGGGCGTGGATTA 2261
Query 2264 AACGAGAGCCTGACGACGGCCGAGGAGATCATGACACGTGTCTAATGAAGG-AAAATGTA 2322
|||| || |||| ||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 2262 AACGGGAACCTGCCGACGACCGAGGAGATCATGACACGTGTCTAATGAGGGGAAAATCTA 2321
Query 2323 CGGTTGTATATAAGTGGAATCACTTCTGATTATGCGTTTATTTACATTTCTT 2374
||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2322 CGGTTGTATATAAGTGGAATCTCTTCTGATTATGCGTTTGTTTACATTTCTT 2373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89435895260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5