BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61700.2
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486659 jgi|Araly1|486659|fgenesh2_kg.5__2651__AT3G61700.2 2566 0.0
Ahg483796 jgi|Araly1|483796|fgenesh2_kg.4__2856__AT2G46420.1 861 0.0
> Ahg486659 jgi|Araly1|486659|fgenesh2_kg.5__2651__AT3G61700.2
Length=1779
Score = 2566 bits (1389), Expect = 0.0
Identities = 1688/1820 (93%), Gaps = 70/1820 (4%)
Strand=Plus/Plus
Query 2 CAGTCTACTCTCCTGTTTGGtctctctctctctctctttttttttt-ACTCTTATCTCTG 60
||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1 CAGTCTACTCTACTGTTTGGTCTCTCTCTCTCT-TTTTTTTTTTTTAACTCTTATCTCTG 59
Query 61 TGCAAGCAACTTCGTCTCTCTCGATAATGGCGTTCCGATATCTTCTCGCTGTCTCCGTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGCAAGCAACTTCGTCTCTCTCGATAATGGCGTTCCGATATCTTCTCGCTGTCTCCGTCT 119
Query 121 TCGGAGTTTTTGTTTGAATTCTTCAAAGGACAGTCGGATCTTTGTTTTACACTATC-T-T 178
|||||| ||||||||| | |||||||||||||||||||||||||| |||||||| | |
Sbjct 120 TCGGAGATTTTGTTTG-A--CTTCAAAGGACAGTCGGATCTTTGTTAAACACTATCTTCT 176
Query 179 -CA--T--AATCT-TTGTTGGATTTCATCAGACTTGTCAT-TTATTAATCCATCGCGTTT 231
|| | ||||| || ||||||||||||||| || || | | ||||||||||||||||
Sbjct 177 CCAGTTCAAATCTCTTATTGGATTTCATCAGAGTTCTC-TCGT-TTAATCCATCGCGTTT 234
Query 232 CTCAGTGTTTCTAGTTCGCCAATTTCGGTTTTTATATTGGC---TATTAACAATTCGTCG 288
|||||||||||||||| || ||||||||| | ||||||||| |||||| |||||||||
Sbjct 235 CTCAGTGTTTCTAGTTGGCAAATTTCGGTGTGTATATTGGCTATTATTAAAAATTCGTCG 294
Query 289 ACATAACTTTGTGTGTTTTC--GAGTGTGTGAGATTTTTAGGGTTCGTTCTTCAAAGGCT 346
| |||||||||||| | || ||||||||||| | | ||||||||||
Sbjct 295 AGATAACTTTGTGT-TCATCAAGAGTGTGTGAG------A--------T-TTCAAAGGCT 338
Query 347 TCAGGGTCGCGGGAAGGT----TTATGTTTGCTTGAAAATTTTGATACAAATTGACCAAT 402
||| | |||||||||||| || |||||| | |||||||||||||| |||||| |||
Sbjct 339 TCAAGTTCGCGGGAAGGTAAGATTCTGTTTGGTAGAAAATTTTGATACGAATTGAGCAAG 398
Query 403 ATGTTGAACTCTATGGACTGCATTGTTGTTTTTGGTGCTAAAGAGAACACTTCTGATTGA 462
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 399 ATGTTGAACTCTATCGACTGCATTGTTGTATGTGGTGCTAAAGAGAACACTTCTGATTGA 458
Query 463 AGGATGTTTTCACTTTACATTCAGCAGTAATGAAGAACGGACAGTGCGCACAGGAGCTAC 522
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 459 AGGATGCATTCACTTTACATTCAGCAGTAATGAAGAAAGGACAGTGCGCACAGGAACTAC 518
Query 523 AATCTTCCACTCAAGCTTCACATGACTCTCAAGGTGACCAGAAAACCAACCTATCAATAG 582
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 519 ATTCTTCCACTCAAGCTTCACATGACTCTCAAGGTGAACAGAAAACCAACCTATCAATAG 578
Query 583 ATGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAGTAGGAAAGTTT 642
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAGTAGGAAAGTTT 638
Query 643 CACGACAAGATATTGAACTTGTTCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGA 702
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CAAGACAAGATATTGAACTTGTTCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGA 698
Query 703 ACAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAA 762
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 699 ACAGAGATGAGGTCGTGAAGACCCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAA 758
Query 763 CCTTGGTTTGGCAGAAATTGGAAGAAGAAAACGCAGACTTTTTCAGGGCATATTATATAA 822
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 759 CCTTGGTTTGGCAGAAATTGGAAGAAGAAAACGCAGACTTTTTCAGGGCTTATTATATAA 818
Query 823 GGCTGAAACTGAAGAAGCAAATAATTTTGTTCAATCATTTGCTTGAGCACCAGTACCATC 882
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GGTTGAAACTGAAGAAGCAAATAATTTTGTTCAATCATTTGCTTGAGCACCAGTACCATC 878
Query 883 TCATGAAGTATCCTCCTGGACCTCCAAAAGTTCCTCTGGCACCGATACAAAACGGAATGC 942
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 879 TCATGAAGTATCCTCCTGGACCTCCAAAAATTCCTCTGGCACCGATACAAAACGGAATGC 938
Query 943 ATCCCATGGCACCTGTTAACATGCCGATGGGATACCCAGTACTACAACATCCTCAAATGC 1002
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 939 ATCCCATGGCACCTGTTAACATGCCAATGGGATACCCAGTACTACAACATCCTCAAATGC 998
Query 1003 ATGTTCCAGGCCATCCCCATCATCTTGATGCAATGGGAGTATCGAGCTGCCATGTTGTTA 1062
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 999 ATGTTCCAGGCCATCCCCATC-T-T-GATGCAATGGGAGTATCGAGCTGCCATGTTGTTA 1055
Query 1063 ATGGAGTCCCTGCCCCTGCTAATTTCCATCCTTTGAGAATGAATACAGCGAATGATATGG 1122
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1056 ATGGAGTCCCTGCCCCTGCGAATTTCCATCCTTTGAGGATGAATACAGCGAATGATATGG 1115
Query 1123 TGATCGATACAACTGCGAACGATGCAACTCCTCAAGTGATTCCACCAAACAGTGGTGCGA 1182
||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||
Sbjct 1116 TGATCGATACAACTGCGAATGGTGCAACTCCTCAAGTGATTCCACCAAACAGTGGGGGGA 1175
Query 1183 TGCCTGAGATGGTAGCGAGTCCAGCTTCTGTGGCGTCAAGTGGACACTTTCCATTTGCTG 1242
|||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1176 TGCCTGAGATGGCAGCGAGCCCAGCTTCTGTGGCGTCAAGTGGACACTTTCCGTTTGCTG 1235
Query 1243 CTTCAGACATGTCGGGTATGGTAATGGACACTTCAGTACTTGATTCGGCATTCACATCTG 1302
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1236 CTTCAGACATGTCGGGTATGGTAATGGACACTTCAGTGCTTGATTCAGCATTCACATCTG 1295
Query 1303 ACGTTGGACCGGATGGAGAAGGAGCCGGGAATTCCAGAGATTCCCTCAGGTCATTTGATC 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 ACGTTGGACCGGATGGAGAAGGAGCCGGGAATTCCAGAGATTCCCTCAGGTCATTTGATC 1355
Query 1363 AGATCCCTTGGAACTTTAGCCTTTCTGATCTCACCGCAGATTTGTCAAATCTGGGAGATA 1422
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1356 AGATTCCTTGGAACTTTAGCCTTTCTGATCTCACGGCAGATTTGTCAAATCTGGGAGAT- 1414
Query 1423 TGTATGTTGCAGATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTG 1482
| || | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1415 T-TA-G--G-AG---------CCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTG 1460
Query 1483 ATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGAGGAGTTTTTCGTGGATT 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 ATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGAGGAGTTTTTCGTGGATT 1520
Query 1543 CGGTGCCTGGACCTCGTTCTAATTCAGATGAAGAGAAGCCTTGAATTGAAAGGTAGAGAC 1602
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1521 CGGTGCCTGGACCTCGTTCTAATTCAGATGAAGAGAAGCCTTGAATTGAAAAGTAGCGAC 1580
Query 1603 GGCCATAATCATCTA-CAG-T---C-ACCAA-GCATTATTAAAATAACAAGTATTGATAT 1655
|||||||||||||| ||| | | ||||| |||||||||||||||||| |||||||||
Sbjct 1581 GGCCATAATCATCTTTCAGATAAACCACCAAAGCATTATTAAAATAACAAATATTGATAT 1640
Query 1656 ATA-AA-TCAGAGTATTATGAATAAAATGAAGCTGCAGTTGTAGTCTCCTTGTATCTCTA 1713
||| || ||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1641 ATATAAATCAAAGCATTATGAATAAAATGAAGCTGCAGTTGTAGTCTCCTTGTACCTCTA 1700
Query 1714 TTACAATTCTCTTAAATGAAGCAAGAAATAGGCGTAGACTAGTTTCCTTT-TCTTTTATT 1772
||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 1701 TTACAATTCTCTTAAATGAAGCAAGAAATAGGCTTAGACTAGTTTC-TTTGTCTTTTATT 1759
Query 1773 TGTTTCAATCCTATGCTTTG 1792
||||||||||||||||||||
Sbjct 1760 TGTTTCAATCCTATGCTTTG 1779
> Ahg483796 jgi|Araly1|483796|fgenesh2_kg.4__2856__AT2G46420.1
Length=1723
Score = 861 bits (466), Expect = 0.0
Identities = 910/1110 (82%), Gaps = 87/1110 (8%)
Strand=Plus/Plus
Query 525 TCTTCCACTCAAGCTTCACATGACTCTCAAGGTGACCAGAAAA-CCAACCTATCAATAGA 583
||||| || |||| ||||| ||| || |||||||| || |||| || | |||||||||
Sbjct 436 TCTTCTACCCAAGTTTCACTTGAGTCCCAAGGTGAACA-AAAAGTTAATCAATCAATAGA 494
Query 584 TGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAGTAGGAAAGTTTC 643
|| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 495 AGCCCCTATACAAGATTCTGGTTCTGTATCTGCCTCAAGTAATGACGGTAGGAAAGTTTC 554
Query 644 ACGACAAGATATTGAACTTGTTCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGAA 703
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 555 AAGGCAAGATATTGAACTTGTCCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGAA 614
Query 704 CAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAAC 763
||||||||||||||| || || |||||||| ||||||||||| |||||||| ||||||||
Sbjct 615 CAGAGATGAGGTCGTCAAAACCCTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAAC 674
Query 764 CTTGGTTTGGCAGAAATTGGAAGAAGAAAACGCAGACTTTTTCAGGGCATATTATATAAG 823
||| || ||||||||| ||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct 675 CTTAGTATGGCAGAAACTGGAAGAAGAAAACGAAGAGTTTTTCAGGGCATATTACATCAG 734
Query 824 GCTGAAACTGAAGAAGCAAATAATTTTGTTCAA-TCATTTGCTTGAGCACCAGTACCATC 882
|||||||||||||||||||||| || | ||||| | ||||||| ||||||||||| || |
Sbjct 735 GCTGAAACTGAAGAAGCAAATAGTTGTATTCAACT-ATTTGCTGGAGCACCAGTATCACC 793
Query 883 TCATGAAGTATCCTCCTGGACCTCCAAAAGTTCCTCTGG-CACCGATACAAAACGGAATG 941
||| ||||||| | | || | ||||||||||||||| | ||||| || ||||| ||
Sbjct 794 TCACGAAGTATAATG-T--ACATTCAAAAGTTCCTCTGGTC-CCGATGCAGAACGGTATT 849
Query 942 CATCCCATGGCACCTGTTAACA---TGCCGATGGGATACCCAGTACTACAACATCCTCAA 998
|||||||||||| |||| |||| |||| |||||||| ||||||||||||||||| |||
Sbjct 850 CATCCCATGGCATCTGTGAACAACATGCCCATGGGATATCCAGTACTACAACATCCACAA 909
Query 999 ATGCATGTTCCAGGCCATCCCCATCATCTTGATGCAATGGGA-GT--A-T--CGAGCTGC 1052
||||||| || ||| |||||||||| | | ||| ||||| | || | | | ||||||
Sbjct 910 ATGCATGCTCAAGGTCATCCCCATC-T-T-GATCCAATGAGCTGTGGAATGTCAAGCTGC 966
Query 1053 CATGTTGTTAATGGAGTCCCTGCCCCTGCTAATTTCCATCCTTTGAGAATGAA-TACAGC 1111
||||| ||||||||||||||||| |||||||||||||| || | || || || | |||
Sbjct 967 CATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTCCAACCAATCAGGATCAACT-CAGG 1025
Query 1112 GAATGATATGGTGATCGATACAAC--TGCGAACGATGC-AACTCCTCAAGTGATTCCACC 1168
|||||||||||| || |||||||| || | || || |||||| || ||||||||||
Sbjct 1026 GAATGATATGGTAATAGATACAACCATG-GCT-GA-GCCAACTCC--AA-TGATTCCACC 1079
Query 1169 AAACAGTGGTGCGATGCCTGAGATGGTAGCGAGTCCAGCTTCTGTGGCGTCAAGTGGACA 1228
|| |||||| | ||| | || ||| |||||| ||||||||||||||||||||||||||
Sbjct 1080 AAGCAGTGG--C-ATGTCGGATATGCCAGCGAGCCCAGCTTCTGTGGCGTCAAGTGGACA 1136
Query 1229 CTTTCCATTTGCTGCTTCAGACATGTC-GGGTATGGTAATGGACACTTCAG-TACTTGAT 1286
||||||||||||||||||||||||||| ||| |||| |||||| || |||| | ||||||
Sbjct 1137 CTTTCCATTTGCTGCTTCAGACATGTCAGGG-ATGGGAATGGATACATCAGCT-CTTGAT 1194
Query 1287 TCGGCATTCACATCTGACGTTGG-A-C--C-G--G----A----T-GGA---GA---AGG 1324
|| || ||||||||||| || || | | | | | | | ||| || |||
Sbjct 1195 TCTGCTTTCACATCTGATGT-GGCAACTTCAGTAGGGTTACAACTTGGATCAGATGGAGG 1253
Query 1325 AGCCGGGAATTCCAGAGATTCC-CTCAGGTCATTTGATCAGATCCCTTGGAACTTTAGCC 1383
||| || ||||| ||||| || |||||| ||||||||||||| ||||||||||||||||
Sbjct 1254 AGCTGGAAATTCTAGAGAC-CCTCTCAGGCCATTTGATCAGATACCTTGGAACTTTAGCC 1312
Query 1384 TTTCTGATCTCACCGCAGATTTGTCAAATCTGGGAGATATGTATGTTGCAGATTTAGGAG 1443
| ||||| ||||| ||||||||||||||||| |||||| | || | | | |
Sbjct 1313 TCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGAT-T-TA-G--G--G-----G--- 1357
Query 1444 CCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATT 1503
|||||||||||||||| || || || |||||||| || |||||||||||||| || ||||
Sbjct 1358 CCTTAGGAAACTATCCCGGTTCACCTTTTCTTCCTTCCGATTCAGAGATTTTACTCGATT 1417
Query 1504 CTCCTGAACAAGAGGACATAGAGGAGTT-TTTCGTGGATTCGGTGCCTGGACCTC---GT 1559
||||||||||||||| |||||| || || ||| ||||||||||| || ||||||| ||
Sbjct 1418 CTCCTGAACAAGAGGGCATAGATGAATTCTTT-GTGGATTCGGTTCCAGGACCTCCATGT 1476
Query 1560 TCTA-ATTCAGATGAAGAGAAGCCTTGAAT 1588
|| | | ||||| ||||| ||| ||| |||
Sbjct 1477 TC-ACAGTCAGAAGAAGACAAGTCTT-AAT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5