BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61710.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486660 jgi|Araly1|486660|fgenesh2_kg.5__2652__AT3G61710.1 2534 0.0
> Ahg486660 jgi|Araly1|486660|fgenesh2_kg.5__2652__AT3G61710.1
Length=1800
Score = 2534 bits (1372), Expect = 0.0
Identities = 1578/1674 (94%), Gaps = 28/1674 (2%)
Strand=Plus/Plus
Query 172 GGAGAGCGATGAGGAAAGAGGAGATTCCAGATAAAAGTCGGACTATCCCGATCGATCCGA 231
||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 112 GGAGAGCGATGAGGAAAGAGGAGATTCCAGATAAAAGTCGG---AT-----T-GATCCGA 162
Query 232 ATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATT 291
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 163 ATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACGCCCTTACCATCGTCGGCGTCGATT 222
Query 292 CCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGCTACGCAGGGCTCATCTATCC 351
|||||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||
Sbjct 223 CCTACGCCGGCAAGTTCTTCAACGATTCCCCTCCTTCCGGTACGCAGGGCTCCTCCATCC 282
Query 352 ATGGAGCTAACAGTGTTCTTGGTTCAACACGCATGGACAACTCTTTTGTTGTTTTACCTC 411
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 283 ATGGAGCTAGCAGTGTTCTTGGTTCAACACGCATGGACAACTCTTTCGTTGTTTTACCTC 342
Query 412 GACATAAGCCTCCTCAATCTCAGGGCATTCCTCCACGTCCTCGCGGGGCGTCCTCACCTC 471
|||||||| |||| | |||||||||||||||||||||||| ||||| || || |||
Sbjct 343 GACATAAG---CCTC-A--TCAGGGCATTCCTCCACGTCCTCGTGGGGCCTCGTCTGCTC 396
Query 472 AGCCTGATGCTACTCAATCTGGAAAGGCGATGGAGGAATCGTTTGTAGTTGTCTATAAGT 531
|||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct 397 AGCCTGATGCAACTCATTCTGGAAAGGCAATGGAAGAATCGTTTGTAGTTGTGTACAAGT 456
Query 532 CTGAGCCTGTTTCTGATTCTGGTGGTTCTCACAATCTGTCTCTTGAAGTGGGCCAAAACG 591
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 457 CTGAGCCTGCTTCTGATTCTGGCGCTTCTCACAATCTGTCTCTTGAAGTGGGCCAAAACG 516
Query 592 GTCCCTTACATTCAAATACTTCTGGCTTTAATGCGACTATCAATGTCTTAACTCGTGCTT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 517 GTCCCTTACATTCAAATACTTCTGGCTTTAATGCGACTATCAATGTCTTAACACGTGCTT 576
Query 652 TTGATATTGCTAGAACTCAGACACAGGTTGAACAGCCATTGTGCTTAGAATGCATGAGGG 711
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TCGATATTGCCAGAACTCAGACACAGGTTGAACAGCCATTGTGCTTAGAATGCATGAGGG 636
Query 712 TATTGTCTGATAAACTTGAAAAAGAAGTCGAGGATGTGACGAGGGACGTGGAAGCATACG 771
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TATTGTCTGACAAACTTGAAAAAGAAGTCGAGGATGTGACGAGGGACGTGGAAGCATACG 696
Query 772 AAGCATGCGTTCAGAGGTTAGAAGGAGAGACGCAAGATGTTCTTAGTGAAGCTGATTTTC 831
|||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 697 AAGCATGCGTTCAGCGGTTAGAAGGGGAGACACAAGATGTTCTTAGTGAAGCTGATTTTT 756
Query 832 TCaaggaaaagaagaagattgaggaagaagaaagaaaacttgttgcagctatagaagaaa 891
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TGAAGGAAAAAAAGAAGATTGAGGAAGAAGAAAGAAAACTTGTTGCAGCTATAGAAGAAA 816
Query 892 cagagaaacaaaaTGCTGAAGTAAACCATCAACTGAAGGAGCTAGAATTC-AAGGGAAAT 950
||||||||||||||||||||||||||||||||||||| ||||||| | || |||||||||
Sbjct 817 CAGAGAAACAAAATGCTGAAGTAAACCATCAACTGAAAGAGCTAG-AGTCAAAGGGAAAT 875
Query 951 CGTTTTAACGAACTTGAAGATCGGTATTGGCAAGAGTTCAATAATTTTCAGTTTCAATTA 1010
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 876 CGCTTTAACGAACTTGAAGATCGGTATTGGCAAGAGTTCAATAATTTTCAATTTCAACTA 935
Query 1011 ATTGCCCATCAGGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACAT 1070
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ATAGCACATCAGGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACAT 995
Query 1071 TTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGAATGATGGG 1130
|||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 996 TTAGAGTTATTAAATAAGACTAATGTACTTACTGATGCCTTCCCCATACGGTATGATGGA 1055
Query 1131 GAATTTGGTACAATTAACAATTTTCGACTTGGAAGACTCCCTGCCATAAAAGTTGAGTGG 1190
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1056 GATTTTGGTACAATTAACAATTTTCGACTTGGAAGACTCCCTGCCATAAAGGTTGAGTGG 1115
Query 1191 GATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTAT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTAT 1175
Query 1251 TTCCGGCCAAAGTTTCAATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATT 1310
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1176 TTCCGGCCAAAGTTTCAATGTCGAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATT 1235
Query 1311 GTAGACAGCAACAACGAAACTTATGAGCTGTTTGGTCCTGTTAACTTGTTTTGGAGCACT 1370
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1236 GTAGACAGCAACAACGAAACTTATGAGCTGTTTGGTCCTGTAAACTTGTTTTGGAGTACT 1295
Query 1371 CGGTACGATAAAGCCATGACACTGTATTTGATGTGTCTTAAAGACTTTGCTGATTTTGCA 1430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1296 CGGTACGATAAAGCCATGACACTGTATTTGATGTGTCTTAAAGACTTTGCTGATTTCGCA 1355
Query 1431 AATTCAAAGGACCAAGAGAACAATATTCCACCAGATAATTGCCTCAACCTTCCATACAAG 1490
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1356 AATTCAAAGGACCAAGAGAACAATATTCCACCAGAGAAATGCCTCAAACTTCCATACAAG 1415
Query 1491 ATCGAAAAGGACAAAGTATTGGGGTATTCAATAACACAGAGCTTCAACAAGCAAGAGAGT 1550
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1416 ATCGAAAAGGACAAAGTGGAGGGATTTTCAATAACACAGAGCTTCAACAAGCAAGAGAGT 1475
Query 1551 TGGACCAAAGCACTAAAGTATACTCTCTGCAACCTCAAATGGGCTCTCTACTGGTTCGTT 1610
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1476 TGGACCAAAGCACTAAAGTATACTCTCTGCAACCTCAAATGGGCACTCTACTGGTTCGTT 1535
Query 1611 GGAAACACTAATTTCCAACCTCTCTCTGCGACGGTCTCTCTGCCTTCTAATATATCAGCG 1670
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1536 GGAAACACTAATTTCCAACCTCTCTCTGCGACGGTCTCTCTGCCTTCTGATATATCAGCT 1595
Query 1671 GCTGGTTCCTTGTACGCCAAGCGAGGTCCTGACTCTAGTAAGCCTTCA--TG-Taaaaaa 1727
|||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 1596 GCTGGTTCCTTGTACGCCAAGCGAGGTCCTGATTCTAGTAAGCCCTCAGCTGGTAAAAAA 1655
Query 1728 aCTTAGAAACTCGTGATAGA----CTGAA-TCAACGACTTTGTGAATAGTTTATAAGCAT 1782
||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 1656 CCTTAGAAACTCATGATAGATTGACTGAAATCAGCGACTTTGTGAATAGTTTATAAGCAT 1715
Query 1783 TTATGTCATAGCATCATCGAATAATAAGAAACATTGATGCTTTTAAGttttttt 1836
||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1716 TTATGCCATAGCATC---GAATAATAAGAAACACAGATGCTTTTAAGTTTTTTT 1766
Score = 176 bits (95), Expect = 5e-43
Identities = 107/113 (95%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 27 GAGAAATCTAAAATTAGGCGGTGAATGATTTAGATTAGTAACAAGCATCACACACACAGA 86
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 GAGAAATCTAAAATTAGGCGGTGAATGATTTAGATTAGTAAGAAGCATCACACACACAGA 62
Query 87 TTGTTTGGTGTAGACAAATTCAAACCCTAACCCTAGATTGATTGCGTACGGAG 139
||| | ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 63 TTGATAAGTGTAGATAAATTCAAACCCAAACCCTAGATTGATTGCGTACGGAG 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5