BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61720.1
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486663 jgi|Araly1|486663|fgenesh2_kg.5__2655__AT3G61720.1 3203 0.0
> Ahg486663 jgi|Araly1|486663|fgenesh2_kg.5__2655__AT3G61720.1
Length=2376
Score = 3203 bits (1734), Expect = 0.0
Identities = 2197/2413 (91%), Gaps = 62/2413 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGCCAATAAAGATGAATTCTCCGTCAAGCAAATCTTTCCAAAGCTGGGAGGAGAA 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGGCTGCCAATAAAGATGAATTCTCCGTCAAGCAAATCTCTCCAAAGCTGGGAGGAGAA 60
Query 61 AGAGGAGCTCGAAACCCTCGTTACGGTCCAACTTCTTCACACGACCTCGTCGAACAGATG 120
|||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 AGAGGAGCTCGAAA--C-CGTTACGGCCCAACTTCTTCACACGACCTCGTCGAGCAGATG 117
Query 121 GAGTTTCTTTACGTACAAGTAATCCAAGCCATCAAC--AACTCTGTTGTAAACCCTAGT- 177
||||||||||||||| |||||||||||||||| || ||||||| ||||||||||| |
Sbjct 118 GAGTTTCTTTACGTAGAAGTAATCCAAGCCAT--ACGGAACTCTGCTGTAAACCCTA-TA 174
Query 178 GCCCGCATATGT-TGCCCCGTCGTCGAAATCACTCTCGGGAACTACAAATCCTCTACCAA 236
||||||| |||| | |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 175 GCCCGCACATGTAT-CCCCATCGTCGAAATCACTCTCGGAAACTACAAATCCTCTACCAA 233
Query 237 AAATCTGCCAATGGGACCAAATATGGATTGGAACCAAGTCTTTGCTTTCGACAAATCCAA 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 234 AAATCTGCCAATTGGACCAAATATGGATTGGAACCAAGTCTTTGCTTTCGACAAAACCAA 293
Query 297 AGGTGATGTCTTGTCGGTTACTCTTAAAGACGGTCCGACCAATACCGTAATCAACAAGCG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGGTGATGTCTTGTCGGTTACTCTTAAAGACGGTCCGACCAATACCGTAATCAACAAGCG 353
Query 357 CAACTTCAAGCTGGCCTCGGAAATTCCGACTAGGGTTCCTCCCGATGCAAGAATCGCACC 416
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 354 CAACTTCAAGCTGGCCGCGGATATTCCGACTAGGGTTCCTCCAGATGCAAGAATCGCACC 413
Query 417 GCAGTGGTACTCTATGCATAATACCGAAACCGACTTTTACATGGAGTTGCTGATGTCAGT 476
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 414 GCAGTGGTACTCTATGCATAATACCGAAACCGATTTTTACATGGAGTTGCTGATGTCAGT 473
Query 477 TTGGTTCGGTACACAAGTTGATGAGGTTTATCCAGAGGCTTGGTTTTCAGACGCCTGTGA 536
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||
Sbjct 474 TTGGTTCGGTACACAAGTCGATGAGGTTTATACAGAGGCTTGGTTTTCAGACGCCTCTGA 533
Query 537 AGTGTGTGCCTCTCGCGTGATCAACACGCGACCTAAGGTCTACCTAGCCCCAAGGCTCTG 596
|||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 534 AGTGAGTGCCGGTTACGTGATCAACACGCGACCTAAGGTCTACCTAGCTCCAAGGCTCTG 593
Query 597 TTATGTTAGGGTTACGATTGTTTCAGGTCATGATTTGATTTCCAA-GGATA-AAAACAAG 654
||||||||||||||| |||||||||||||| ||||||||| || | ||||| ||||| |
Sbjct 594 TTATGTTAGGGTTACCATTGTTTCAGGTCACGATTTGATT-CCTACGGATAGAAAACG-G 651
Query 655 ACTCCTTCGGTTTATGTGACAGCTACTCTAGGTAAAGTCGCTCTAAAAAC-GAAAGTTTC 713
|||||||||||||| |||||||||||||||||| |||| ||||||||||| | | |||||
Sbjct 652 ACTCCTTCGGTTTACGTGACAGCTACTCTAGGTCAAGTGGCTCTAAAAACCGGA-GTTTC 710
Query 714 TTCCGGTACAAACCCGTCATGGAACCAAGATCTAATCTTTGTTGCATCAGAGCCGTTAGA 773
|||||| || |||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 711 TTCCGGGACGAACCCGTCTTGGAACCAGGATCTAATCTTTGTTGCATCAGAGTCGTTAGA 770
Query 774 AGGAACTGTCTACATTAGGTTAATCGACAGAGAAGACGAACAACACGAAGGATGCATAGG 833
|||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 771 AGGAACTGTCTACATTAGGTTAATCGACAGAGTCGACGATCAACACGAAGAATGCATAGG 830
Query 834 GACGTTGAAGAAGAAGCTGACAGAGATGACTCCGCTCAAAGTTCCAAGTTCCGCACCGGC 893
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GATATTAAAGAAGAAGCTCTCAGAGATGACTCCGCTCAAAGTTCCAAGTTCCGCACCGGC 890
Query 894 TTTGTTCTACGACATTGAAATGCCGACTGAAG-TCAAACCGGCTGGCGATTCGAGGAGGT 952
|||||||||||||||||||| |||| | ||| || ||||||| ||||||||||||||||
Sbjct 891 TTTGTTCTACGACATTGAAACGCCGGTT-AAGGTCGAACCGGCAGGCGATTCGAGGAGGT 949
Query 953 TCGCTAGCAGACTCAAGATGAAACTAGCCACTGATCAAGCTTATCACGTCGCCGAGGAAT 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 950 TCGCTAGCAGACTCAAGATGAAACTAGCCACTGATCAAGCTTATCACGTCGCTGATGAAT 1009
Query 1013 GCACCCAATACTCGAGCGACAATAGAGCTTTTG-TAAAAGGGTTATGGCCCGGTCTGCTC 1071
|||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct 1010 GCACCCAATACTCGAGCGACTATAGAGCTTTTGCTAAA-GGGTTATGGCCATGTCTGCTC 1068
Query 1072 GGGAAATTAGAAATCGGGATCTTGGGAGCAACCGGTTTAAAGGGAAGCGACGAGAAAAAA 1131
|||||||||||||| ||||| ||||| || || |||||||| ||||||||||||||||||
Sbjct 1069 GGGAAATTAGAAATTGGGATTTTGGGTGCGACGGGTTTAAAAGGAAGCGACGAGAAAAAA 1128
Query 1132 CAGACTATCGACAGTTACGTAGTGGCTAAATACGGGAATAAATGGGCCAGGACTCGAACC 1191
||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1129 CAGGGTATCGACAGTTACGTAGTGGCTAAATATGGGAATAAATGGGGCAGGACTCGAACC 1188
Query 1192 GTGGTTAATAGTGTCTCACCCAAGTGGAACGAGCAGTATTCGTGGGATGTTTACGAGAAG 1251
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1189 GTGGTTGATAGTGTCTCACCCAAGTGGAACGAGCAGTATTCGTGGGATGTTTACGAGACG 1248
Query 1252 TGTACGGTGTTAACCCTTGGAATCTACGATAATCGACAAATCTTGGAGGACAAGAATAAG 1311
|||||||| ||||| ||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1249 TGTACGGTATTAACGCTTGGAATCTACGATAATCGACAAATCTTTGA---CAAGAATCAG 1305
Query 1312 GCGAACGATGTTCCGATCGGGAAAGTGAGGATTCCATTGAACCGGGTACAAAGTGACTGG 1371
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1306 GCGAACGATGTTCCCATCGGGAAAGTGAGGATTCCATTGAACCGTGTACAAAGTGACTGG 1365
Query 1372 ATTTACACTTGCTCGTATCCTATTCTGAAGTTGGGAAGCAGCGGACTGAAGAAGATGGGA 1431
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1366 ATTTACACTTGCTCGTATCCGATTCTGAAGTTGGGAAGCAGCGGACTGAAGAAAATGGGA 1425
Query 1432 GAGCTTCAGCTAGCAGTT-CGTTTTGTTTATGTTGCGCAAGGGTATGCACGGTATTCAGC 1490
||||||||||| || | | || ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1426 GAGCTTCAGCTCGC-GATACGCTTTGTTTATGTTGCGCAAGGGTACGCACGGTATACAGC 1484
Query 1491 TCCTTTCCGTTGGATGTTACCGAAAGCTCATTACAAATCTCCATTGTCCATGTATCAGAT 1550
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1485 TCCTTTCCGTTTGATGTTACCGAAAGCTCATTACAAATCTCCATTGTCCATGTCTCAGAT 1544
Query 1551 CGACAAGTTGAGAGCACAAGCTGTTGAGATTAATTGTGCGAATCTTGCGAGAACAGAGCC 1610
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1545 CGACAAGTTGAGAGCACAAGCTGTTGAGATTAACTGTGCGAATCTTGCGAAAACAGAGCC 1604
Query 1611 GGCTTTGAGAAGCGAAGTTGTGTCAGATATGTTGAAACC-AAAGAGTAGGAACTTCAGTA 1669
||| |||||||||||||| ||||| ||||||||||| || ||| | || || |||||||
Sbjct 1605 GGCGTTGAGAAGCGAAGTAGTGTCGGATATGTTGAAGCCGAAAAA-TAAGAGTTTCAGTA 1663
Query 1670 TAAGAATATCCAAAGATAATTTTGATAGGCTTTATACAGTCGTTAAGATGGTCTTGTGGT 1729
|||||||| |||||| |||||||||||||||||||| |||| ||||||||||||| ||||
Sbjct 1664 TAAGAATAACCAAAGCTAATTTTGATAGGCTTTATAGAGTCCTTAAGATGGTCTTTTGGT 1723
Query 1730 GTGTTTCGGTCATTGCATCGGTCAGATCCACGACAGCCTGTACT-CCGAAATTCATTGCG 1788
|||||||||||||||||||||||||||||||||||| | || | || ||| ||||||||
Sbjct 1724 GTGTTTCGGTCATTGCATCGGTCAGATCCACGACAGAAT-TAATTCCCAAAGTCATTGCG 1782
Query 1789 C-TTGGAGTCAGTTTTGTGTTTCTTTTT-TGGGAGTACTACATATATTGGTTGGTGACTT 1846
|| |||||| |||||||||||||| ||| |||||| ||||||||||||| |||||
Sbjct 1783 TGTTTT-GTCAGTCTTGTGTTTCTTTTTATGG-AGTACTGGATATATTGGTTGGCGACTT 1840
Query 1847 CGTGGCTAGTTGCGTATTGCATTGTGCTTTGCATTGTGGTTATACTTTTACGGGAAATCC 1906
||||| || ||| | | ||| ||| |||||| |||||||| ||||||||||
Sbjct 1841 CGTGGGTATTTG-G----G-ATT-TGC-----ATTGTGCTTATACTTCTACGGGAAATTG 1888
Query 1907 TCAAGTCCCCGAGGCAAACATATAACTGGTTGTTTTATCGGAACGTCACTCCGCCTCCT- 1965
||||||||||| || ||| |||| |||||||| |||| ||| ||||||||| ||||||
Sbjct 1889 TCAAGTCCCCGGGGAAAATATATGACTGGTTGCCTTATTGGATCGTCACTCCTCCTCCTC 1948
Query 1966 --TTGATTCTCGTCGATTTGAAGCTACGGAAACTTGACTCGATCAACCTAGACGAGTTAG 2023
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1949 CATTGATTCTCGTCGATTTGAAGCTACGGAAACTGGACTCGATCAACCTAGACGAGTTAG 2008
Query 2024 CCGAAGAGTTTGACTCGTTTCCGTCGTCGGAGAACGATTTGAACATTCTTAGGATGAGGT 2083
|||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||
Sbjct 2009 CCGAAGAGTTTGACTCGTTTCCGTCGGCGGAGAACGATGTAAACATTCTTAAGATGAGGT 2068
Query 2084 ACGATAGGTTGAGGAAGATTATGGAGAACGTCATGTTATTAATGGGGGATGCTGCTACAC 2143
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 2069 ACGATAGGTTGAGGAAGATTATGGAGAACGTCATGTTACTAATGGGAGATGCTGCTACAC 2128
Query 2144 AAGGCGAACGGTTACTAGCGGCTTTTACGTTGCTTGAGCGGCCATTCGTTTTGATTATCT 2203
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 2129 AAGGCGAACGGTTTCTAGCGGCTTTTAAGTTGCTTGAGCGGCCATTGGTTTTGATTGCCT 2188
Query 2204 TATTGGCCCTCTGTTAT-TGCTCCATGCTCGTCGTTTGCCTTGGTTGGGATCTA-CA-T- 2259
| |||| |||||||||| || | ||||||||||| ||||||| ||||||| || || |
Sbjct 2189 TCTTGGTCCTCTGTTATGTG-TACATGCTCGTCGCTTGCCTTATTTGGGATATAACACTT 2247
Query 2260 GTTCGTAAGTGT-TTGATTT-TCGTATTTATT-TGCTACTGGGTGCAACTACCGTG-GTT 2315
||||||||||| || ||| | | |||| || | | ||||||||||| | ||||| ||
Sbjct 2248 GTTCGTAAGTGGGTT--TTTATGGCATTTGTTGTCC-ACTGGGTGCAATTCCCGTGTGT- 2303
Query 2316 CCGCAATAATTTACCCGATGGGAGCCTCAACTTCTTCCGAAGATTGCCGAGCAACGAAGA 2375
|||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2304 CCGCAATAATTTGCCCGAGGGGAACCTCAACTTCTTCAGAAGATTGCCGAGCAACGAAGA 2363
Query 2376 CCTCATGTTCTGA 2388
|||||||||||||
Sbjct 2364 CCTCATGTTCTGA 2376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89969158690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5