BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61730.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120 1659 0.0
Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117 296 2e-79
> Ahg899154 jgi|Araly1|899154|Al_scaffold_0005_3120
Length=1080
Score = 1659 bits (898), Expect = 0.0
Identities = 1023/1081 (95%), Gaps = 17/1081 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAC-GAGATCTAGTGATGCCGAAGGAGATAGTAGAGGGAAGATGATAGCTCCGGT 59
|||||| | ||||||| |||||| |||||||||||||||||||||| ||| | ||||||
Sbjct 1 ATGAAG-CTGAGATCTGGTGATGTTGAAGGAGATAGTAGAGGGAAGAGGATCGTTCCGGT 59
Query 60 GGGAGAAGGAAATGGTGGACGGAAGAGAAAATTGGTGCagagcaacgaacagaagaacga 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGGAGACGGAAATGGTGGACGGAAGAGAAAATTGGTGCAGAGCAACGAACAGAAGAACGA 119
Query 120 tattcagagagaagaagatggtagagctaagagaagaaTCGTTCAGAGCAGCGACCAGAA 179
| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCAGAGAGACGAAGATGGTAGAGCGAAGAGAAGAATCGTTCAGAGCAGCGACCAGAA 179
Query 180 GAACGGGAAGATCCTCAGAGGAATTCGTGGCTGTGTATCTCCACGGTGCTCTGCTCAGAC 239
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 180 GAACGGGAAGATCCTCAGAGGAATTCATGGCTGTGTATCTCCTCGGTGCTCTGCTCAGAC 239
Query 240 TTACCAGTCTCGCTTTTCATGGTATGAGCAAGATATATGGACATACATTTCAAGGTTTTT 299
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TTACCAGTCTCGCTTCTCATGGTTTGAGCAAGATATATGGACATACATTTCAAGGTTTTT 299
Query 300 GGATGGTAAATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTATAAGATCGCAAT 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GGATGGTAAATCACTGGTGAAGCTGGGAGCAACAAACAAATGGTTCTACAAGATCGCAAT 359
Query 360 GGAGGATACTGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTGTGCCGTTTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 GGAGGATACTGTTTGGAGGTTTGCCTGCTTGCGTGATCTTCAGGTCCCTCAGCCGTTTCC 419
Query 420 CGTTTCTTCCACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTTTCTTCCACCTGGATTAAGATTTATGCTTCAGCTTTTGATGGGAGTCACTCTTACTT 479
Query 480 GTTCCGTCAGAAGGAGAAGC-----------AT----ATTGGTGCCTTTGTTCTTGACTC 524
|||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 480 GTTCCGTCAGAAGGAGAAGCATATTGATTGGATGCGGATTGGTGCCTTTGTTCTTGACTC 539
Query 525 TCGAACTTCACTCCTGACTGAGAGTTTGAGTGGTCGTCTGAAATTCCCAAGGGAAGGAAC 584
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 540 TCGAACTTCACTCCTGACTGAGAGTTTGAGTGGTCGACTGAAAGTCCCAAGGGAAGGAAC 599
Query 585 CATAGAACGGATGTTACAATCCAGTGGTTCATGTCTTATCAACGACATCAAAAGCGGTAT 644
||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 600 CATAGAATGAATGTTACAATCTAGTGGTTCATGTGTTATCAACGACATCAAAAGCGGTAT 659
Query 645 TTGGATTGCAGATTTACAGCTTGTACGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGG 704
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TTGGATTGCGGATTTACAGCTTGTGCGTTGCCCTGTTTGTGACCTCAGTACCTGTGATGG 719
Query 705 AACAATGCAAACTCTTGATGCTAGGCACATTGAACTCTTCCTTAGTGAAGGCTACAAAGA 764
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 AACAATGCAAACACTTGATGCTAGGCACATTGAACTGTTCCTTAGTGAAGGCTACAAAGA 779
Query 765 TGGAAGCTGGGATTACAATCTGATCGGATCTCATAAGTTGCAGAAAAACGCAAGTGCAGC 824
||||||||||||||||||||| || |||||||||||||| |||||| |||||| ||||||
Sbjct 780 TGGAAGCTGGGATTACAATCTTATTGGATCTCATAAGTTACAGAAAGACGCAAATGCAGC 839
Query 825 TTGTGGAGCCATATTTGACCTCAAACACCTTAAAGAATCTTCATATTCAGGTATTCTCAA 884
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TTGTGGAGCCATATTTGATCTCAAACACCTTAAAGAATCTTCATCCTCAGGTATTCTCAA 899
Query 885 CCTCAAGTCTTGGACCGGAGAGTCAAATGATTCCCAACCTAAAGCAGTTATCGCACCCCA 944
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 900 CCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTAAAGCAGTTATCGCACCCCA 959
Query 945 CGCTGTTGCTGTTCACACAAGACTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACAC 1004
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 TGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATCCTTGTGAAGTACCACAC 1019
Query 1005 AATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAACTTCTCTG 1064
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 AATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGCAGCTTCTCTG 1079
Query 1065 A 1065
|
Sbjct 1080 A 1080
> Ahg899151 jgi|Araly1|899151|Al_scaffold_0005_3117
Length=300
Score = 296 bits (160), Expect = 2e-79
Identities = 180/190 (95%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 875 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGTCAAATGATTCCCAACCTAAAGCAGTTA 934
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 107 GTATTCTCAACCTCAAGTCTTGGACCGGAGAGGCAGATGATTCCCAACCTGAAGCAGTTA 166
Query 935 TCGCACCCCACGCTGTTGCTGTTCACACAAGACTGCAAGAAAACGAAGGAATCCTTGTGA 994
|||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 167 TCGCACCCCATGCAGTTGCTGTTCACACAAGATTGCAAGAAAACGAAGGAATACTTGTGA 226
Query 995 AGTACCACACAATGAAAGCAGGAACAGACGGTGACATTGTTTCCATCAGAATCTCCCAGC 1054
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 227 AGTACCACACAATGAAAGCAAGAACAGACGGTGACATTGTTTCCATAAGAATCTCCCAGC 286
Query 1055 AACTTCTCTG 1064
| ||||||||
Sbjct 287 AGCTTCTCTG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5