BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61750.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349233 jgi|Araly1|349233|fgenesh1_pg.C_scaffold_5002625 1864 0.0
> Ahg349233 jgi|Araly1|349233|fgenesh1_pg.C_scaffold_5002625
Length=1194
Score = 1864 bits (1009), Expect = 0.0
Identities = 1139/1201 (95%), Gaps = 11/1201 (1%)
Strand=Plus/Plus
Query 1 ATGA-AAACTTTGGTCGGATTTTACATCCTCTGTTTCTTAATCGGACAAGATCTGCC-TT 58
|||| || |||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1 ATGAGAACCTTT-GTCGGATTTTACATCCTCTGTCTCTTAATCGGACAAGATCTGCCTTT 59
Query 59 TCTTAGCTGCAGATGACGTCAATGTCATAAACGATTCGACCCAGAATCTCTGTTTTGCAA 118
|| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TC-TAGCTGCTGATGACGCCAATGTCATAAACGATTCGACCCAGAATCTCTGTTTTGCAA 118
Query 119 ACCGATTATCCGATTTCCTCCCTCCACCGTACAGCAATATCTCCGATAACATGCCCTGTA 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 ACCGATTATCCGATTTCCTCCCTCCACCGTACAGCAATGTCTCCGATAACATGCCCTGTA 178
Query 179 CTCCTCTTTGGAACACGTTCGTCTTACGGTACTCAGAAAACAGAGACAATGTGATGACGA 238
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 CTCCTCTATGGAACACATTCGTCTTACGGTATTCAGAAAACAGAGACAATGTGATGACGA 238
Query 239 TTATAGTATCGGCTTTATACACAACCGGGTGGGTTGGGATTGGATTCTCGAAAGAAGGAA 298
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 239 TTATAGTATCGGCTTTATACACAACCGGGTGGGTTGGAATCGGATTCTCGAAAGAAGGAA 298
Query 299 GAATGGTTGGATCAAGCGCGATGATCGGATGGATTTCGAAAAAGGGTCACGCCAAAATCA 358
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 299 GAATGGTTGGATCAAGCGCGATGGTCGGGTGGATTTCGAAAAAGGGTCACGCCAAAATCA 358
Query 359 AACAATACTATCTCCAAGGAACGGAGAGAGACCAAGTTGTGCCGGATCAAGGAGAATTGC 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 AACAATACTATCTCCAAGGAACGGAGAGAGACCAAGTTGTGCCTGATCAAGGAGAATTGC 418
Query 419 AACTACAAAAAGTCCCGCCGGTGGTGGCTCTTCACGGAGCAATGATTTACTTAGCTTTCC 478
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 AACTACAAAAAGTCCCTCCGGTGGTGGCTCTTCACGGAGCAATGATTTACTTAGCTTTTC 478
Query 479 AGGTGAAATTCGCCGTTAGAGTTCCTCGGAGAGCTGTCAT-TCTAGCGTTTAGCACTGCT 537
||||||||||| |||||||||||||||||||||| ||||| | |||| |||||||| |||
Sbjct 479 AGGTGAAATTCTCCGTTAGAGTTCCTCGGAGAGCCGTCATAT-TAGCCTTTAGCACCGCT 537
Query 538 TATCCTTCCAAGCTAGGCCGTTTGACTAAGCATGATGATAAAACTACAGTCATCGTCGAT 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATCCTTCCAAGCTTGGCCGTTTGACTAAGCATGATGATAAAACTACAGTCATCGTCGAT 597
Query 598 TTTTCCAAAGCTAGTGGAGCAACCTCCATAAAGACGACAACTTCTACGGAGAAGACAAAA 657
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TTTTCCAAAGCAAGTGGAGCAACCTCCATGAAGACGACAACTTCTACGGAGAAGACAAAA 657
Query 658 CATGGAGTAATGGCGATACTCGGATGGGGTTTCTTACTTCCTGTAGGGGCAATCCTAGCA 717
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 658 CATGGAGTAATGGCGATACTCGGATGGGGTTTCTTACTTCCCGTAGGGGCAATCCTCGTG 717
Query 718 AGATATCTAAGACATAAAGACCCTCTTTGGTACTATCTTCATATCGGTTTTCAGTTCACG 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGATATCTTAGACATAAAGACCCTCTTTGGTACTATCTTCATATCGGTTTTCAGTTCACG 777
Query 778 GGCTTTATCTTCGGTTTAGCCGCAGTTATTCTTGGGATTCAGCTTTACAATAGGATCCAG 837
|||||||| ||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 778 GGCTTTATATTCGGTTTAGCAGCTGTTATCCTCGGGATTCAGCTTTACAATAGGATCCAG 837
Query 838 CCGGATATACCTGCGCATCGAGGCATTGGGATCTTTCTTCTAGTCCTTAGCACTCTTCAG 897
|||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||||
Sbjct 838 CCGGATATACCTGCGCATCGAGGCATAGGGATCTTTCTTTTAGTTCTTAGCATTCTTCAG 897
Query 898 GTTTTGGCTTTCTTTGCACGGCCACAGAAGGAGACAAAGATGAGGAGATATTGGAATTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTTTGGCTTTCTTTGCACGGCCACAGAAGGAGACAAAGATGAGGAGATATTGGAATTGG 957
Query 958 TATCATCATTGGATTGGGAGGATCTCTCTCTTT-TTTGGAGCAGTGAACATTGTTCTTGG 1016
|||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||
Sbjct 958 TATCATCATTGGATTGGGAGAATCTCTCT-TTTCTTTGGTGCAGTGAACATTGTTCTTGG 1016
Query 1017 AATTCGAATGGCGGATAATGGAGGAGATGGATGGAAAATTGGATATGGATTTGTTCTGTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 AATTCGAATGGCGGATAATGGAGGAGATGGATGGAAAATTGGATATGGATTTGTTTTGTC 1076
Query 1077 AGTCACGTTACTTGCTTTTGTTGTTCTTGAAATATTCAGGATTCGTGGCACTATCGGCTC 1136
||| || |||||||||||||||||||||||||||||||||||||||||| | || || ||
Sbjct 1077 AGTGACATTACTTGCTTTTGTTGTTCTTGAAATATTCAGGATTCGTGGCTCCATTGGTTC 1136
Query 1137 ACCATCTTCTCGCAGCCCTCCCTCTTTTGAGACACATCCAAGTTCTAGTACTAGTGTTTG 1196
||| ||||||| || ||||||||| |||||| ||||||||||||||| ||||||| ||
Sbjct 1137 ACCTTCTTCTCACACCCCTCCCTCGTTTGAGGCACATCCAAGTTCTA---CTAGTGTCTG 1193
Query 1197 A 1197
|
Sbjct 1194 A 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5