BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61760.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324615 jgi|Araly1|324615|fgenesh1_pm.C_scaffold_5002159 2669 0.0
Ahg931085 jgi|Araly1|931085|scaffold_303542.1 191 2e-47
Ahg950092 jgi|Araly1|950092|scaffold_801979.1 185 9e-46
Ahg945676 jgi|Araly1|945676|scaffold_701905.1 185 9e-46
Ahg939192 jgi|Araly1|939192|scaffold_503383.1 163 4e-39
> Ahg324615 jgi|Araly1|324615|fgenesh1_pm.C_scaffold_5002159
Length=1890
Score = 2669 bits (1445), Expect = 0.0
Identities = 1505/1535 (98%), Gaps = 0/1535 (0%)
Strand=Plus/Plus
Query 360 CTGCTGTGAGGCAGGAGATCTCGGATGAGACAGATCGTGAAACTGGTCGCAGCAGCAAAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTGCTGTGAGGCAGGAGATCTCGGATGAGACAGATCGTGAAACTGGTCGCAGCAGCAAAG 415
Query 420 TAATATCCACAGTCCCAATTCATCTCAGTATCTTCTCTCCTAATGTTGTGAATTTGACAC 479
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TAATTTCTACAGTCCCAATTCATCTCAGTATCTTCTCTCCTAATGTTGTGAATTTGACAC 475
Query 480 TTGTCGATCTTCCTGGGCTAACAAAGGTAGCTGTTGATGGCCAGCCTGAAAGCATTGTTC 539
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 TTGTCGATCTTCCTGGGCTGACAAAGGTAGCTGTTGATGGCCAGCCTGAGAGCATTGTTC 535
Query 540 AAGACATCGAGAACATGGTCAGATCGTTTATTGAGAAGCCCAACTGCATCATACTTGCTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 AAGACATCGAGAACATGGTCAGATCGTTTATTGAGAAGCCCAACTGCATCATACTAGCTA 595
Query 600 TTTCCCCTGCAAATCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTG 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 TTTCCCCTGCAAATCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTG 655
Query 660 ATCCCAAAGGAGACAGGACTTTTGGAGTTTTAACAAAAATTGATCTCATGGACCAAGGCA 719
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 656 ATCCAAAAGGAGACAGGACTTTTGGAGTTTTAACTAAAATTGATCTCATGGACCAAGGCA 715
Query 720 CTAATGCTGTTGATATACTTGAAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTAATGCTGTTGATATACTTGAAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTG 775
Query 780 TTGTAAACCGGTCTCAAGCTGACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCGGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGTAAACCGGTCTCAAGCTGACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCGGC 835
Query 840 GTGAACGTGATTACTTCCAGACTAGCCCAGAGTACAGACATTTAACTGAAAGAATGGGTT 899
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 836 GTGAACGTGATTACTTCCAGACTAGCCCAGAATACAGACATTTAACTGACAGAATGGGTT 895
Query 900 CAGAGTATTTAGGAAAGATGCTCTCTAAGCATTTGGAAGTTGTTATCAAGTCTAGAATCC 959
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 896 CAGAGTATTTAGGAAAGATGCTCTCTAAGCATTTAGAAGTTGTTATCAAGTCGAGAATCC 955
Query 960 CGGGACTTCAGTCTCTTATCACAAAGACAATTTCCGAGTTAGAGACAGAGCTAAGCCGTC 1019
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 956 CGGGACTTCAGTCTCTTATCACAAAGACTATTTCCGAGTTAGAGACAGAGCTAAGCCATC 1015
Query 1020 TTGGGAAGCCTGTAGCAGCTGATGCTGGTGGAAAACTTTATATGATCATGGAAATTTGCC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTGGGAAGCCTGTAGCAGCTGATGCTGGTGGAAAACTTTATATGATCATGGAAATTTGCC 1075
Query 1080 GTGCCTTTGATCAAACTTTTAAAGAACACCTGGATGGCACGCGTTCAGGTGGTGAAAAGA 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1076 GTGCCTTTGATCAAACTTTTAAAGAACACCTTGATGGCACGCGTTCAGGTGGTGAAAAGA 1135
Query 1140 TAAATTCTGTGTTCGACAATCAATTCCCAGCTGCCATTAAAAGACTGCAATTCGACAAAC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TAAATTCTGTGTTCGACAATCAATTCCCAGCTGCCATTAAAAGACTGCAATTCGACAAAC 1195
Query 1200 ATCTCTCCATGGACAATGTACGGAAACTGATCACTGAAGCAGATGGATATCAACCTCATC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATCTCTCCATGGACAATGTACGGAAACTGATCACTGAAGCAGATGGATATCAACCTCATC 1255
Query 1260 TCATAGCTCCTGAACAAGGTTATCGCCGGCTCATAGAATCATGCTTAGTCTCCATTAGAG 1319
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1256 TCATAGCTCCTGAACAAGGTTATCGCCGCCTCATAGAATCATGCTTAGTCTCCATTAGAG 1315
Query 1320 GCCCTGCTGAAGCAGCTGTTGATGCGGTTCATTCCATTCTCAAGGATCTTATCCACAAAT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GCCCTGCTGAAGCAGCTGTTGATGCGGTTCATTCCATTCTCAAGGATCTTATCCACAAAT 1375
Query 1380 CCATGGGCGAAACATCTGAACTGAAGCAATATCCAACACTCAGAGTAGAAGTATCAGGTG 1439
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1376 CCATCGGCGAAACATCAGAACTGAAGCAATATCCAACACTGAGAGTAGAAGTATCAGGTG 1435
Query 1440 CAGCCGTGGATTCATTGGATCGAATGAGAGACGAAAGCAGGAAAGCAACTCTGTTACTAG 1499
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1436 CAGCCGTGGATTCATTGGATCGAATGAGAGAAGAGAGCAGGAAAGCAACTCTGTTGCTAG 1495
Query 1500 TGGACATGGAGTCTGGTTACTTAACGGTCGAGTTCTTCAGGAAACTCCCGCAAGATTCTG 1559
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1496 TGGACATGGAGTCTGGTTACTTAACGGTTGAGTTCTTCAGGAAACTCCCGCAAGATTCTG 1555
Query 1560 AAAAAGGTGGGAATCCGACACATTCGATATTCGACAGATACAACGATGCTTATCTCCGAA 1619
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1556 AAAAAGGTGGGAATCCGACACATTCGATATTCGACAGATACAACGATGCATATCTCCGAA 1615
Query 1620 GAATCGGCTCAAATGTGTTGTCATATGTGAACATGGTCTGCGCTGGCTTGAGAAACTCCA 1679
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1616 GAATCGGTTCGAATGTGTTGTCTTATGTGAACATGGTCTGCGCTGGCTTGAGAAACTCCA 1675
Query 1680 TACCGAAATCCATTGTTTACTGTCAAGTCCGTGAAGCAAAACGAAGCCTTCTAGACATCT 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1676 TACCGAAATCCATTGTTTACTGTCAAGTCCGTGAAGCAAAACGAAGCCTTCTAGACTTCT 1735
Query 1740 TCTTCACCGAACTTGGCCAGAAAGAGATGAGCAAATTGTCGAAATTGTTGGATGAGGATC 1799
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCTTCACCGAGCTTGGCCAGAAAGAGATGAGCAAATTGTCGAAATTGTTGGATGAGGATC 1795
Query 1800 CTGCGGTTCAGCAGCGAAGGACTTCGATTGCGAAGAGGCTGGAATTGTATAGAAGTGCTC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CTGCGGTTCAGCAGCGAAGGACTTCGATTGCGAAGAGGCTGGAATTGTATAGAAGTGCTC 1855
Query 1860 AAACGGATATTGAAGCAGTTGCTTGGTCCAAGTAG 1894
| |||||||||||||||||||||||||||||||||
Sbjct 1856 AGACGGATATTGAAGCAGTTGCTTGGTCCAAGTAG 1890
Score = 518 bits (280), Expect = 7e-146
Identities = 292/298 (98%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 62 ATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCTGTACGGCTCTGGGAGAT 121
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1 ATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAAAGAGCCTGTACTGCTCTGGGAGAT 60
Query 122 CACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGCCTGCAATTGCCGTCGTC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGCCTGCAATTGCCGTCGTC 120
Query 182 GGTGGTCAGAGTTCTGGAAAGTCTTCAGTGCTAGAGAGTGTTGTTGGAAAAGATTTTCTA 241
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 121 GGTGGTCAGAGTTCTGGAAAGTCTTCAGTGCTAGAGAGCGTTGTCGGAAAAGATTTTCTA 180
Query 242 CCTCGTGGAGCTGGGATTGTTACACGCAGACCTCTTGTCCTGCAGCTTCATAGAATTGAT 301
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CCTCGTGGAGCTGGGATTGTTACACGTAGACCTCTTGTCCTGCAGCTTCATAGAATTGAT 240
Query 302 GAAGGGAAAGAGTATGCAGAGTTTATGCATCTTCCAAAGAAGAAGTTCACAGATTTTG 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GAAGGGAAAGAGTATGCAGAGTTTATGCATCTTCCAAAGAAGAAGTTCACCGATTTTG 298
> Ahg931085 jgi|Araly1|931085|scaffold_303542.1
Length=723
Score = 191 bits (103), Expect = 2e-47
Identities = 115/121 (95%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64
Query 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 65 GTACGGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124
Query 165 C 165
|
Sbjct 125 C 125
> Ahg950092 jgi|Araly1|950092|scaffold_801979.1
Length=759
Score = 185 bits (100), Expect = 9e-46
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64
Query 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 65 GTACAGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124
Query 165 C 165
|
Sbjct 125 C 125
Score = 95.3 bits (51), Expect = 1e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 613 TCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCCAAAGG 669
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 137 TCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCAAAAGG 193
> Ahg945676 jgi|Araly1|945676|scaffold_701905.1
Length=759
Score = 185 bits (100), Expect = 9e-46
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64
Query 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 65 GTACAGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124
Query 165 C 165
|
Sbjct 125 C 125
Score = 95.3 bits (51), Expect = 1e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 613 TCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCCAAAGG 669
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 137 TCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCAAAAGG 193
> Ahg939192 jgi|Araly1|939192|scaffold_503383.1
Length=352
Score = 163 bits (88), Expect = 4e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 741 AAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTGTTGTAAACCGGTCTCAAGCTG 800
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 145 AAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGATGTTGTAAACTGGTCTCAAGCTG 204
Query 801 ACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCG 837
||||||||| |||||||||||||||||||||||||||
Sbjct 205 ACATTAATATAAGTGTTGATATGATTGCTGCTCGTCG 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5