BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61770.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939248 jgi|Araly1|939248|scaffold_503439.1 1502 0.0
> Ahg939248 jgi|Araly1|939248|scaffold_503439.1
Length=909
Score = 1502 bits (813), Expect = 0.0
Identities = 880/912 (96%), Gaps = 6/912 (1%)
Strand=Plus/Plus
Query 72 TAGCAGCAACTTAATTCTCTCATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTC 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAGCAGCAACTTAATTCTCTCATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTC 60
Query 132 TCTAAAACCATTTCTCATTACCCTTCTCGTTTCTCCTTCGTAAAGCTAACCTCTATCCAA 191
|| ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 61 TCAAAAACCATTTCTCATTATCCTTCTCGTCTCTCCTTCGTAAAGCTAACTTCTATCCAA 120
Query 192 AAGTTGGAAGCTTCCAACAACACCTTATCGTTATTCTGCTGTAAATCA---TCTTCGAAT 248
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 121 AAGTTGGAAGCTTCCAACAACACCTTATCGTTATTTTGCTGTAAATCATCCTCTTCGAAT 180
Query 249 CCTAAACCAGATTGCAATCGTCGTATCAAGTTAAACCCTTTATGTGTATTGCGTCCAATC 308
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 181 CCTAAACCAGATTGCAATCGTCGTATAAAGTTAAACCCTTTTTGTGTATTGCGCCCAATC 240
Query 309 ATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCAATGGATGTCTCGTTTTCGA 368
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCTATGGATGTCTCGTTTTCGA 300
Query 369 GCTTACAGAGACGACACGGCGGCGTTTTCTGAGGATTTCGCTGGAGATTTGAAGCATAAC 428
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 301 GCTTACAGAGACGACACGGCGGCGTTTTCGGAGGATTTCGCCGGAGATTTGAAGCATAAC 360
Query 429 GGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCTGCTAAGATAAAGATTAGCCCT 488
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCCGCTAAGATAAAGATTAGCCCT 420
Query 489 TTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTT 480
Query 549 GCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTT 540
Query 609 CTCTATGCTTCTGGTGGGATGCCTTCGTCTCACTCAGCTTTATGTATGGCTTTGACGACC 668
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 541 CTCTATGCTTCTGGTGGAATGCCTTCGTCTCACTCGGCTCTATGTATGGCTTTGACGACC 600
Query 669 TCTGTGGCGCTTTGTCATGGAGTTGCAGATTCCTTGTTTCCTGTTTGTTTAGGGTTTAGC 728
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TCTGTGGCGCTTTGTCATGGAGTTGCAGATTCTTTGTTTCCTGTTTGTTTAGGGTTTAGC 660
Query 729 TTGATTGTCATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTT 788
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGATTGTGATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTT 720
Query 789 CTGAACTTGATCATTAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTTAAG 848
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CTGAACTTGATCATAAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTAAAG 780
Query 849 GAACTGCTTGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATT 908
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAATTGCTCGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATT 840
Query 909 GCTTGCTTTTGTTGCCAAGGCTATCTCGTCTCAGTCTAAGAAGATGTCTTTTATTCCAAG 968
|||||||||||||||||||||||| ||||||||| ||||||| | ||||||||| |||
Sbjct 841 GCTTGCTTTTGTTGCCAAGGCTATATCGTCTCAGCCTAAGAAC-T--CTTTTATTCAAAG 897
Query 969 TGATCTGGTTGG 980
|| |||||||||
Sbjct 898 TGTTCTGGTTGG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5