BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61780.1
Length=3366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324617 jgi|Araly1|324617|fgenesh1_pm.C_scaffold_5002161 5018 0.0
> Ahg324617 jgi|Araly1|324617|fgenesh1_pm.C_scaffold_5002161
Length=3405
Score = 5018 bits (2717), Expect = 0.0
Identities = 3186/3402 (94%), Gaps = 74/3402 (2%)
Strand=Plus/Plus
Query 19 TCC-AATGATGGTTTCTTCAATTTCTCGTCTTTCTCGTCCAATTCGAACAGGAGACTCGC 77
||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |
Sbjct 24 TCCTAATAATGGTTTCTTCAATTTGTCGTCTTTCTTGTCCAATTCGAACAGGAGACTCAC 83
Query 78 TAAC-----CAA-C-G--TCGATTCAACTTGCCCATCTCCAAATTCCACTACTATCGCGT 128
|||| || | | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 84 TAACAAGAGAAACCAGCATCGATTCAACTTGCCCATCTCCAAATTCCACTACTACCGCGT 143
Query 129 TTCAATTCTCCGAGTCTCGGCTCGGTTCGGAGAGACCTCGAGGCGACGTAATTCGCTGAG 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TTCAATTCTCCGAGTCTCGGCTCGGTTCGGAGAGACCTCGAGGCGACGTAATTCGCTGAG 203
Query 189 GAAGAAGATCATCGGTGATGAGTATTGGCGTTCGACTCCGAAATCTTCTGAACCAGGTAC 248
||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 204 GAAGAAGATTATCGGTGATGAGAATTGGCGTTCGACTCCGAAATCTTCTGACCCAGGTAC 263
Query 249 GAAACCTCTAAACGAAAGCCATAAGTTT-GGTCAC--TG-TGA-----T-GATTTAAGTA 298
|||||||||||||||||||||||| ||| | |||| || ||| | || |||||||
Sbjct 264 GAAACCTCTAAACGAAAGCCATAA-TTTCGATCACAGTGATGATTTGGTCGAGTTAAGTA 322
Query 299 GCACCGAGGGATTGAAAGATAGGGTTGCTCAAGATTCAAATTTGCTGAATGAGCTTGAAG 358
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 323 GCACCGAGGGATTGAAAGATAGTGTTGCTCAAGATTCGAATTTGCTGAATGAGCTTGAAG 382
Query 359 ATTGGGTTGCTCGGTATAACAAGGAAGCAGAGTTTTGGGGTATTGGTTCGAATCCCATTT 418
| ||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 383 ACTGGGTTGCTAGGTATCAGAAGGAAGCAGAGTATTGGGGTATTGGTTCGAATCCCATTT 442
Query 419 TCACTGTCTATCAGGATTCTGTTGGAAACGTAGAGAAAGTAGAGGTTGATGAAGACGAGG 478
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 443 TCACTGTCTATCAGGATTCTGTTGGAAATGTGGAGAAAGTAGAGGTTGATGAAGACGAGA 502
Query 479 TCTTGAGTAGAAGAAGAT-CAGCTCTTGGGGATTTGGAATCAGTGAGTTCTAAGCTTGTA 537
|||||||| ||||| | ||| ||||| ||||||||||| ||||||||||| | || ||
Sbjct 503 TCTTGAGT---AGAAG-TCCAGGTCTTGAGGATTTGGAATTAGTGAGTTCTAGGGTTCTA 558
Query 538 TATGCGAAGAAATTAGCTGAACAAATGGAGAATGGGGAACATGTGATCCATAAGGAGAGT 597
|||||||||||||||||| |||| |||||||| |||||| |||||||||||||||| |||
Sbjct 559 TATGCGAAGAAATTAGCTAAACAGATGGAGAACGGGGAAAATGTGATCCATAAGGATAGT 618
Query 598 TCTCTTGTCAAGTTCGTttcttcttcttcttcttcAGAGGAAGAGTTTCGTCTCGTTAGC 657
|||||||||||||||| | |||||||||||| |||||||||||||||||| | ||||||
Sbjct 619 TCTCTTGTCAAGTTCG--T-TTCTTCTTCTTCATCAGAGGAAGAGTTTCGTTTTGTTAGC 675
Query 658 TCAGTCCAAAACGCAATTCTTCGTCTTGACTTAATTCCAAAGTTGCCGGCGATTGGAAGA 717
||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 676 TCAATCCAAAACGCAATTCTTCGTCTCGACTTAATTCCAAAGTTGCCGGTGATTGGCAGA 735
Query 718 GCTGTTTTGTGTGGTTACATTGGACTCTGGTTGCTGAAGACGGTGCTTGTGTATAGGAAG 777
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 736 GCTGTTTTGTGTGGTTACATTGGACTCTGGTTGCTGAAAACGGTGCTTGTGTATAGGAAG 795
Query 778 AGTAATGAGGTTGAGTGTACAGAGTTGGAGAAGGAGATGATGAGGAGAAAGATGAAAGCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AGTAATGAGGTTGAGTGTACAGAGTTGGAGAAGGAGATGATGAGGAGAAAGATGAAAGCT 855
Query 838 TGGCAGGAAAGGGATATGTCGGAGAAAGGTACCGTGGAAGTTTTGCACAAGGAGGGTTTG 897
||| |||||| || |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 856 TGGAAGGAAAATGAAATGTCGGAAAAAGGTACTGTGGAAGTTTTGCAGAAGGAGGGTTTG 915
Query 898 GAAAAGCCATTGATGTCATTTGAGAAGCCTAAGTTTGATCGAAATGAACTTATGACTAGT 957
|| ||||||||| | || ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 916 GATAAGCCATTGGTTTCGTTTGAGAAGCCTAAGTTTGATCGGAATGAACTTATGAGTAGT 975
Query 958 ATTTCTAAAGTTAAGGGTTCAGAGAAGAAACTGGAACTCGTGAATTCTCCTCATGTT--G 1015
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 976 ATTTCTAAAGTTAAGGGTTCAGAGAAGAAACTGGAACTCTTGAATTCTTCTCATGTTGAG 1035
Query 1016 A-----G----C-TGGACTTTGTTGATAAGATCCATGAAATCAAAGCAATGGCTAGACGA 1065
| | | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1036 AGTGGTGATTCCTTGGACTTTGATGATAAGATCCATGAAATCAAAGCAATGGCTAGACGA 1095
Query 1066 GCACGGGAGATAGAAGCTGGCATAGAACTTAATGAAAAGCAGAAGCTCGATGTGAACAAA 1125
|||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||
Sbjct 1096 GCACGGGAGATAGAAGCTGGTATAGAACTTAATGAAAAGGAGAAGCGCGAGGTGAACAAA 1155
Query 1126 GAAACAG-GCGACAATGAGGAAGATATAAGCATTCAGTCACAGAAG-AGTCTTCCACATG 1183
||||| | |||||||||| |||||||| | | ||||||| || |||||||||||||
Sbjct 1156 GAAAC-GAGCGACAATGATGAAGATAT--G----CGGTCACAG-AGCAGTCTTCCACATG 1207
Query 1184 AGGCTTTGACACACAGTGAAGGTGATGATGATAAAGATG-AACGCTTGGGAACTTCGACT 1242
||| |||||||| |||||||||||||||||||||| | | ||| |||||| | |||||||
Sbjct 1208 AGGGTTTGACACCCAGTGAAGGTGATGATGATAAACAGGAAAC-CTTGGGGATTTCGACT 1266
Query 1243 G--A-CAGT---GAGAACACTGAACT-TTCTGGTTTTGCTGTTCCGATGTTGAATGGGGC 1295
| | | | || ||||||||| | || || ||| ||| |||| ||| ||||||||||
Sbjct 1267 GAAATTAATCAAGAAAACACTGAAATGTT-TGATTTGGCTATTCCAATGGTGAATGGGGC 1325
Query 1296 TATGGTAGATTTTGGTT-TTCTGAATCATGAAATGGCAGCATCTGACAAAGAAAAGGTGA 1354
||||||||||| ||||| | || | |||||||||||||||||||||||||||||||||||
Sbjct 1326 TATGGTAGATTCTGGTTCTCCT-ATTCATGAAATGGCAGCATCTGACAAAGAAAAGGTGA 1384
Query 1355 GTAATGTGGTACCACCAGTTCCTACAGACGGAGTCATCCAATCTTCTGATGTCTCTAAGG 1414
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GTAATGTGGTACCACTAGTTCCTACAGACGGAGTCATCCAATCTTCTGATGTCTCTAAGG 1444
Query 1415 ATCAGTTAAGTATGATGAAGAATAGCACTGGTCGTAAGTCACGGGTCATACGGTCTGTAA 1474
|| |||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ATAAGTTGGGTATTATGAATAATAGCACTGGTCGTAAGTCACGGGTCATACGGTCTGTAA 1504
Query 1475 AAGAGGCTAAAGAGTTCCTTTCAAGAAGAAGTGGTGAGAAAGAGCTTACTCAGGAACCTT 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AAGAGGCTAAAGAGTTCCTTTCAAGAAGAAGTGGTGAGAAAGAGCTTACTCAGGAACCTT 1564
Query 1535 CTCAGATGATAGCCCAAGATAGTGTTGAAATC-TTCTCAAAGCAGAGCGACGAAGAGCGT 1593
||||||||||||||||| | |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1565 CTCAGATGATAGCCCAATACAGTGATGAAATCTTTC-CAAAGCAGAGCGACGAAGAGCGT 1623
Query 1594 GGTGTAGCTAGAAAACACGAATTGGTTGACAAAAATAAAATCCTTGGTGCAGCTGTCAAT 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GGTGTAGCTAGAAAACACGAATTGGTTGACAAAAATAAAATCCTTGGTGCAGCTGTCAAT 1683
Query 1654 GGAACCTTGAAATCTGCACTTGAGTCTACTTCTTCTGAACCGTTGGGGAAGGATGCTGAT 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1684 GGAACCTTGAAATCTGCACTTGAGTCTACTTCTTCTGAACCGTTGGGGAAGGATGTTGAG 1743
Query 1714 TGTCAACCCCAAAAGAATGATTACCAAAAACTCTCAGAACCTGGGAATGCAGTTAAGGGA 1773
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TCTCCACCCCAAAAGAATGATTACCAAAAACTCTCAGAACCTGGGAATGCAGTTAAGGGA 1803
Query 1774 TCGAGCAAGCAAATAAATTCTTCAAATAAAATCGAAGA--GC---ACAA---TTTT-AAA 1824
||||||||||||| | |||||||||||||||| ||||| || |||| |||| | |
Sbjct 1804 TCGAGCAAGCAAAGAGATTCTTCAAATAAAATTGAAGAGCGCAAAACAAGTTTTTTCAGA 1863
Query 1825 TTTGCCAAAAGTTCTTCTGGTGGTACTGAACATATAGAGAAGGAAGAACCATCAGGGAAG 1884
| ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 1864 TCAGCCAAAAGTTCTTCTGGTGATACTGAACAAATAGAGAAGGCAGAACCATCAGGGAAG 1923
Query 1885 GGGAATTGGATAGAGAATAACTACCATGAATTTGAGCCTGTTGTTGAAAAAATGAGAGCA 1944
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 GAGAATTGGATAGAGAAAAACTACCATGAATTTGAGCCTGTTGTTGAAAAAATGAGAGCA 1983
Query 1945 GGATTTAGGGATAATTATATGGCTGCTAGAGAGGGTGAAACTCGGGAGCCAGGTACAATT 2004
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1984 GGATTTAGGGATAATTATATGGCTGCTAGAAAGGGTGAAACTCGGGAGCCAGGTACCATT 2043
Query 2005 GCTGAAATTGCAGAACTTTACCGCAGTGAGTATAATGATGAGCTTGAGTGGATGAAGGAC 2064
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2044 GCTGAAATTGCAGAACTTTACCGCAGTGTGTATAATGATGAGCTTGAGTGGATGAAGGAC 2103
Query 2065 GAGAAGCTAAGGGACATTGTCTTCCATGTTCGAGATAATGAGCTGGCTGGTAGGGATCCA 2124
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2104 GAAAAGCTAAGAGACATTGTCTTCCGTGTTCGAGATAATGAGCTGGCTGGTAGGGATCCA 2163
Query 2125 TTTCACCTGATTGATGATGAAGATAAAGCTATGTTTTTGCAAGGCTTGGAGAAGAAAGTT 2184
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2164 TTTCACCTGATTGATGCTGAAGACAAAGCTATGTTTTTGCAAGGCTTGGAGAAGAAAGTT 2223
Query 2185 GAGAAAGAAAATGAGAAACTGTCTCATCTGCATCAGTGGATTCATTCAAACATTGAAAAC 2244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2224 GAGAAAGAAAATGAGAAACTGTCTCATCTGCATCAGTGGATTCATTCAAACGTTGAAAAC 2283
Query 2245 CTTGACTACGGAGTAGATGGCGTCAGTGTGTATGATCCACTAGAAAAGATCATACCGAGA 2304
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2284 CTGGACTACGGAGTAGATGGCGTCAGTGTGTATGATCCACCAGAAAAGATCATACCGAGA 2343
Query 2305 TGGAAAGGGCCTTCACTTGATAAGAACCCCGAGTTTCTCAATAACTATCATGAACAGCGT 2364
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2344 TGGAAAGGGCCTTCGCTTGATAAAAACCCCGAGTTTCTCAATAACTATCATGAACAGCGC 2403
Query 2365 GAAGCACTGTTTTCTGAAAAAGCTGCATCTGTATCTCCTGTGAAATATGAAGAACAGAGC 2424
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2404 GAAGCATTGTTTTCTGGAAAAGCTGCATCTGTATCTCCTGTGAAATATGAAGAACAGAGC 2463
Query 2425 TCTCATCAGGAATTATCAGAGTCTGCTTCCTCTGAGAACACTCTCACCCCTTCATCTGAA 2484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 TCTCATCAGGAATTATCAGAGTCTGCTTCCTCTGAGAACACTCTCACCCCTTCATCTGAA 2523
Query 2485 ATTACCTCAAGCCAGCCAAAGATTGTTGTAGAAGGAAGTGATGGATCTGTTAGACCTGGT 2544
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2524 ATTACCTCAAGCCAGCCAAAGATTGTTGTAGAAGGAAGTGATGGATCTGTTAAACCTGGG 2583
Query 2545 AAAAAATCAGGAAAGGAGTATTGGCAGCACACGAAGAAGTGGTCACGTGGGTTCCTTGAG 2604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2584 AAAAAATCAGGAAAGGAGTATTGGCAGCACACGAAGAAGTGGTCACGTGGGTTCCTCGAG 2643
Query 2605 TTGTACAATGCAGAGACTGATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGAC 2664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2644 TTGTACAATGCAGAGACTGATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGAC 2703
Query 2665 TTAGACCGATGGATTACTGAAGACGAAATCAAAGACGCTGCTGATATAATGGAAAAGCTG 2724
|| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2704 TTGGACCGATGGATTACAGAAGATGAAATCAAAGACGCAGCTGATATAATGGAAAAGCTG 2763
Query 2725 CCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTCAACAAACTCAAGAGAGAGATGGAG 2784
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2764 GCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTGAACAAACTCAAGAGAGAGATGGAG 2823
Query 2785 TTGTTTGGTCCTCAAGCTGTTTTGAGCAAATACCGCGAGTATGGAGAAGATAAGGAAGAA 2844
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2824 TTGTTTGGTCCTCAAGCTGTTGTGAGCAAATACCGCGAGTATGGAGAAGATAAGGAAGAA 2883
Query 2845 GATTATCTATGGTGGTTGGACCTTCCGCATGTACTGTGCCTTGAGTTGTACACAGTTGAT 2904
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2884 GATTATCTTTGGTGGTTGGATCTACCGCATGTACTGTGCCTTGAGTTGTACACAGTTGAT 2943
Query 2905 GAAAACGGAGAGCAGCAAGTAGGGTTCTACACATTGGAGATGGCAACAGATCTCGAGTTA 2964
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2944 GACAACGGAGAGCAGCAAGTAGGGTTCTACACATTGGAGATGGCAACAGATCTCGAGTTA 3003
Query 2965 GAACCCAAACCACATCATGTGATTGCTTTCGAGGACGCTGCAGACTGTCGAAACCTCTGT 3024
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 3004 GAACCCAAACCACATCATGTGATTGCTTTCGAGGACGCTGCGGACTGTCGAGACCTCTGT 3063
Query 3025 TACATTATTCAAGCTCATTTGGATATGCTACGAAGTGGAAACGTTTTCATTGTTCCGCGC 3084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3064 TACATTATTCAAGCTCATTTGGATATGCTACGAAGTGGAAACGTTTTCATTGTTCCGCGT 3123
Query 3085 CCGCCAAAGGATGCATATCGAGAAGCCAAGGCGAATGGATTTGGTGTAACGGTTATTAGG 3144
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3124 CCGCCAAAGGATGCATATCGAGAAGCCAAGGCGAATGGGTTTGGTGTAACGGTTATTAGG 3183
Query 3145 AAAGGAGAACTGAAGTTGAATATTGACGAGCCATTAGAAGAAGTAGAGGAAGAGATCTGT 3204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3184 AAAGGAGAACTGAAGTTGAATATTGACGAGCCATTAGAAGAAGTAGAGGAAGAGATATGT 3243
Query 3205 GAGATAGGAAGCAAGATGTACCATGATAAGATCATGGGAGAACGATCTGTGGATATAAGC 3264
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3244 GAGATAGGAAGCAAGATGTACCATGATAAGATCATGGGAGATCGATCTGTGGATATAAGC 3303
Query 3265 TCGTTGATGAAAGGTGTCTTTAACCTGAAGACCAAACCTACTGGCCGAAGAAGAAAACGA 3324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3304 TCGTTGATGAAAGGTGTCTTTAACCTGAAGACCAAACCTACTGGCCGAAGAAGAAAACGA 3363
Query 3325 TCAAAGCAGGCTCTTAAAGATTCTAACAAGAAAAGTAGCTGA 3366
|||||||| ||||| |||||||||||||||||||||||||||
Sbjct 3364 TCAAAGCATGCTCTGAAAGATTCTAACAAGAAAAGTAGCTGA 3405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127074236247
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5