BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61790.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486680 jgi|Araly1|486680|fgenesh2_kg.5__2672__AT3G61790.1 2025 0.0
Ahg889354 jgi|Araly1|889354|Al_scaffold_0007_1340 579 2e-164
> Ahg486680 jgi|Araly1|486680|fgenesh2_kg.5__2672__AT3G61790.1
Length=1355
Score = 2025 bits (1096), Expect = 0.0
Identities = 1303/1393 (94%), Gaps = 53/1393 (4%)
Strand=Plus/Plus
Query 3 TCTCTTTAACACAGCCGCCTTTGTGACCGTCCGATCTTAAATCAGCGTTTCCGGTTCATT 62
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCTCTCTAACACAGCCGCCTTTGTGACCGTCCGATTTTAAATCAGCGTTTCCGGTTCATT 60
Query 63 TGACGGCAACTAtctctctctctctctctAGAGAATTGATGAAGAAGAGCATCTATCttt 122
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 61 TGACGGCAACTCTCTCTCTCTCTCTCTCT--AGAATTGATGAAGAAAAGCATCTATCTTT 118
Query 123 tttgtttttGAAAATTAACAACACTTCACGAGGGTTGACCTGTTTCGGTGGTGTTTCTTC 182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTTGTTTTTGAAAATCAACAACACTTCACGAGGGTTGACCTGTTTCGGTGGTGTTTCTTC 178
Query 183 AA-T--T-CCGGATTTTGATCTTTCGTTTCGATCGAAGATCAATCAAAGTCTCCACCTTT 238
|| | | ||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 179 AATTCATCCCGAATTTTGATATTTCGTTTCGATCGAAGATCAATCAAAGTTTCCACCTTT 238
Query 239 CTTCAATGGATTTGGATAGCATGGACTGTACATCAACCATGGATGTGACAGATGATGAAG 298
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 239 CTTCAATGGATTTGGATAGCATGGACTGTACATCCACCGTGGATGTGACTGATGATGAAG 298
Query 299 AGATCCACCAAGATCGCCATTCCTACGCTTCTGTTTCCAAGCATCATCATACTAATAACA 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 AGATCCACCAAGATCGCCATTCCTACGCTTCTGTTTCCAAG---CATCATACTAAT---- 351
Query 359 ACACCACCAACGTTAATGCTGCTGCTTCTGGGCTTCTCCCTACCACCACCAGTGTTCATG 418
|| ||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 352 -CA-CACCAACCTGAATGCTGCTGCTTCTGGGCTTCTCCCGACCACCACCAGTGTTCATG 409
Query 419 AGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTCACA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTCACA 469
Query 479 ATGGACATACGT-TGTGTTCAACCTGTAAAGCCAGGGTTCACAACCGCTGCCCAACTTGT 537
|||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 470 ATGGTCATAC-TCTGTGTTCAACCTGTAAAAACAGGGTTCACAACCGCTGCCCAACTTGT 528
Query 538 AGACAAGAGCTCGGTGATATCCGTTGTTTGGCACTGGAAAAAGTAGCCGAATCACTTGAA 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 529 AGACAAGAGCTCGGTGATATCCGTTGTTTGGCTCTGGAAAAAGTAGCCGAATCACTTGAA 588
Query 598 CTACCTTGTAAACACATGTCACTTGGATGTCCTGAAATCTTCCCTTATTACAGTAAGCTC 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CTACCGTGTAAACACATGTCACTTGGATGTCCTGAAATCTTCCCTTATTACAGTAAGCTC 648
Query 658 AAACATGAGACTGTATGTAACTTCAGACCTTATAGCTGCCCTTATGCTGGATCCGAGTGT 717
|||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 649 AAACATGAGACTGTATGTAACTTCAGGCCTTATAACTGTCCGTATGCTGGATCCGAGTGT 708
Query 718 TCTGTTACGGGCGATATCCCTTTCTTAGTTGCTCATCTGAGGGATGATCATAAGGTGGAT 777
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TCTGTTACAGGCGATATACCTTTCTTAGTTGCTCATCTGAGGGATGATCATAAGGTGGAT 768
Query 778 ATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTCGAA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTCGAA 828
Query 838 AACGCCACATGGATGTTAACTGTCTTTCACTGCTTCGGTCAATACTTCTGTCTTCACTTT 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 829 AACGCCACATGGATGTTAACTGTCTTTCATTGCTTCGGTCAATACTTCTGTCTACACTTT 888
Query 898 GAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCGTTCCTGCGTTTCATGGGGGAC 957
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 889 GAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCCTTTCTGCGTTTCATGGGGGAC 948
Query 958 GAGACAGAAGCTCGAAACTACAATTACAGTTTAGAAGTGGGAGGTTATGGTCGGAAGCTG 1017
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 949 GAGACAGAAGCGCGGAACTACAATTACAGTTTAGAAGTGGGAGGTTATGGACGGAAGCTG 1008
Query 1018 ATATGGGAAGGAACACCAAGAAGCGTAAGAGACAGCCACAGGAAAGTTAGAGACAGTCAT 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ATATGGGAAGGAACACCGAGAAGCGTAAGAGACAGCCACAGGAAAGTTAGAGACAGTCAT 1068
Query 1078 GATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGGAGATAGGAAAGAG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGGAGATAGGAAAGAG 1128
Query 1138 CTGAAACTTCGAGTCACTGGAAGGATATGGAAAGAGCAACAACAAAGTGGTGAAGGTGGA 1197
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1129 CTGAAACTTCGAGTCACTGGAAGGATCTGGAAAGAGCAACAACAAAGTGGTGAAGGTGGA 1188
Query 1198 GGAGCTTGTATCCCAAACTTGTCTTGAAAATTaaaaaaaaaaaaTCAAACTGATTTTGAA 1257
|||||||||||||||||||||||||| | ||| | |||||||
Sbjct 1189 GGAGCTTGTATCCCAAACTTGTCTTG-----------------A--AAA-T--TTTTGAA 1226
Query 1258 AACCTCACCGATTTGGCCTTGTCTCTG-TAACCATGGTTATCTGTAATTAGGGTTTTCTC 1316
|||||| |||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1227 AACCTCGCCGA------CTTGTCTCTGTTAACCATGGTCATCTGTAATTAGGGTTTTCTC 1280
Query 1317 TGACGATAAACTTGGGGTTGTTCTTATGTATCTCTCTCTGTCTTTCTC------ATGTCA 1370
|||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 1281 TGACGATAAACTTGGG-TTGTTCTTATGTACCTCTCTCTGTCTTTCTCTTTCTCATGTCA 1339
Query 1371 TGGAGGttttttt 1383
|||||||||||||
Sbjct 1340 TGGAGGTTTTTTT 1352
> Ahg889354 jgi|Araly1|889354|Al_scaffold_0007_1340
Length=984
Score = 579 bits (313), Expect = 2e-164
Identities = 625/775 (81%), Gaps = 24/775 (3%)
Strand=Plus/Plus
Query 416 ATGAGCTTCTCGAATGTCCTGTCTGCACCAATTCTATGTACCCTCCCATTCATCAGTGTC 475
|||||||||| || || |||||||| ||| |||||||||| ||||| || ||||||||||
Sbjct 176 ATGAGCTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTC 235
Query 476 ACAATGGACATACGTTGTGTTCAACCTGTAAAGCCAGGGTTCACAACCGCTG-CCCAACT 534
| |||||||| || ||||| || |||||||||| ||||| || ||| | || ||| ||
Sbjct 236 ATAATGGACACACATTGTGCTCGACCTGTAAAGTGAGGGTGCATAACAGGTGTCCC-ACA 294
Query 535 TGTAGACAAGAGCTCGGTGATATCCGTTGTTTGGCACTGGAAAAAGTAGCCGAATCACTT 594
||||||||||| || || ||||| | ||||| || || || ||||||||||| || |||
Sbjct 295 TGTAGACAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCCCTT 354
Query 595 GAACTACCTTGTAAACACATGT-C-A-CTTGGATGTCCTGAAATCTTCCCTTATTACAGT 651
|| || ||||| || || | | | || ||||| ||||| ||||| |||||||||||
Sbjct 355 GAGCTGCCTTG-CAA-GTAT-TACAATCTCGGATGCCCTGAGATCTTTCCTTATTACAGC 411
Query 652 AAGCTCAAACATGAGACTGTATGTAACTTCAGACCTTATAGCTGCCCTTATGCTGGATCC 711
|| || || || ||| || | ||||||||||||||||| || || ||||||||||| |||
Sbjct 412 AAACTGAAGCACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCC 471
Query 712 GAGTGT--TCT-GTTACGGGCGATATCCC-TTTCTTAGTTGCTCATCTGAGGGATGATCA 767
|||||| | | | || ||| |||||||| |||||| || || ||||| |||||||||||
Sbjct 472 GAGTGTGGTATCG-TA-GGG-GATATCCCTTTTCTT-GTAGCCCATCTCAGGGATGATCA 527
Query 768 TAAGGTGGATATGCATTCTGGGTGTACTTTCAACCATCGTTATGTCAAGTCTAATCCTCG 827
|| || || ||||| |||| | ||||| ||||| || || ||||| || ||||| ||
Sbjct 528 CAAAGTTGACATGCACGCTGGTTCCACTTTTAACCACCGCTACGTCAAATCAAATCCGCG 587
Query 828 TGAAGTCGAAAACGCCACATGGATGTTAACTGTCTTTCACTGCTTCGGTCAATACTTCTG 887
|||||| || ||||| || |||||| |||| || || || ||||| || |||||||||||
Sbjct 588 TGAAGTAGAGAACGCAACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAATACTTCTG 647
Query 888 TCTTCACTTTGAGGCATTCCAGCTCGGAATGGCTCCAGTCTACATGGCGTTCCTGCGTTT 947
|| || ||||| ||||||||||| || |||| ||| || |||||||| |||||| | ||
Sbjct 648 CCTCCATTTTGAAGCATTCCAGCTTGGGATGGGTCCGGTATACATGGCCTTCCTGAGATT 707
Query 948 CATGGGGGACGA-GACAGAAGCTCGAAACTACAATTACAGTTTAGAAGTGGGAGGTTA-T 1005
|||||||||||| || || || || | ||||| ||||| |||||||||||||| | |
Sbjct 708 CATGGGGGACGAGGA-GGACGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGG-CAGT 765
Query 1006 GGTCGGAAGCTGATATGGGAAGGAACACCAAGAAGCGTAAGAGACAGCCACAGGAAAGTT 1065
|| ||||||| | |||||||||||| ||||||||| | ||||| ||||||||||||||
Sbjct 766 GGAAGGAAGCTAACATGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTA 825
Query 1066 AGAGACAGTC-ATGATGGACTAATTATACAAAGAAACATGGCTCTCTTCTTCTCAGGTGG 1124
|||||||| | | || || || || || ||||||||||||||||||||||||||||| ||
Sbjct 826 AGAGACAG-CAACGACGGTCTCATCATCCAAAGAAACATGGCTCTCTTCTTCTCAGGCGG 884
Query 1125 AGATAGGAAAGAGCTGAAACTTCGAGTCACTGG-AAGGATATGGAAAGAGCAACA 1178
||| ||||||||||| |||||| |||||||||| || || ||||||||||||||
Sbjct 885 AGACAGGAAAGAGCTTAAACTTAGAGTCACTGGTAAA-ATCTGGAAAGAGCAACA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5