BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61800.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324619 jgi|Araly1|324619|fgenesh1_pm.C_scaffold_5002163 3022 0.0
> Ahg324619 jgi|Araly1|324619|fgenesh1_pm.C_scaffold_5002163
Length=1980
Score = 3022 bits (1636), Expect = 0.0
Identities = 1884/2001 (94%), Gaps = 27/2001 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGAAGAGATGACGGCGGAGGGAAAGTTATTGGGTTGATAGAGAAAGCGACGAAA 60
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGGAGAGATGACGGCGGAGGAAAAGTTATTGGGTTGATAGAGAAAGCGACGAAA 60
Query 61 TCAACTGCTCAAGAGGTTGACCCGAGGCTTCTCAAGGCGATCAAATCCATTGTTCGCTAT 120
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 61 TCAACTGCTCAAGAGGTTGACCCGAGGCTGCTCAAGGCGATCAAATCTATTGTTCGGTAT 120
Query 121 TCTGATTCGGAGGTCCGACTTAGTTCGCAAACCCTAATGGAGCTCATGAGACATAACCAC 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGATTCGGAGGTCCGACTTAGTGCGCAAACCCTAATGGAGCTCATGAGACATAACCAC 180
Query 181 TCTCAGGTTCGATATCTGACGCTTTTCATAATCGACGAGCTATTCATGAGATCAAAGCTC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TCTCAGGTTCGATATCTGACGCTTTTCATAATCGACGAGCTTTTCATGAGATCAAAGCTC 240
Query 241 TTTAGAACTTTGATAATTGAGAATCTTGATCAGCTTTTGAGTTTAAGTATTGGGTTTAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TTTAGAACTTTGATAATTGAGAATCTTGATCAGCTTTTGAGTTTAAGTGTTGGGTTTAGA 300
Query 301 AGCAATCTGCCTCTTCCTGCACCACCTGCTGTTGCCACTACGTTGCGTTCAAAGGCTATT 360
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 AGCAATCTGCCTCTTCCTTCACCACCTGCTGTTGCCACTATGTTGCGTTCAAAGGCTATT 360
Query 361 GAGTTCTTGGAGAAGTGGAATTTGTCTTTTGGGTTTCATTACAAGGAGCTTAGACTTGGG 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 361 GAGTTCTTGGAGAAGTGGAATTTGTCTTTTGGGTTTCATTACAAGGAACTTAGGCTTGGG 420
Query 421 TTTGATTACCTTAAGAATACCCTCAAGTTAAAGTTCCCTGATTTACAGGCTAATGCTGCA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 TTTGATTACCTTAAGAATACCCTCAAGTTAAAGTTCCCTGATTTACAAGCTAATGCTGCA 480
Query 481 CGGATTCAACGAGAGAGACAGGAGAGGGAGATGAAGACAAAAGAGATTTTGCGGAACAAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CGGATTCAACGAGAGAGACAGGAGAGGGAGATGAAGACAAAAGAGATTTTACGGAACAAG 540
Query 541 TTTGATTCCTTGAGAGTTAGTTTTGGACTCTTCAAGTATGAGATTGAGGTAACGATAAAG 600
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTTGATTCCTTGAGGGATAGTTTTGGACTCTTCAAGTATGAGATTGAGGTAACTATAAAG 600
Query 601 GAAATCAAGGAGTGTATGGAAATTGTTCAGTGGAGAGGGGATGATGGTGTTCCACTTGCG 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GAAATCAAGGAGTGTATGGAAATTGTTCAATGGAGAGGGGATGATGGTGTTCCACTTGCG 660
Query 661 ATCTTAGATGAGGAAGATTTTGAGGAGATCCGTTGTTCTCATCTGAGGCAAATTCGTCTT 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 ATCTTAGATGAGGAAGATTTTGAGGAGATTCGTTGTTCTCATCTGAGGCAAATTCGTCTT 720
Query 721 GATTCACTGAAACAATCAGAAAAGGTTGAAGAAACTGGTGAAAACAGAATTGTATTTGAT 780
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 721 GATTCACTGAAACAATCAGAAAAGGTTGAAGAAACTAGTGAAAACAGAGTTGTATTCGAT 780
Query 781 GTGTTGAGGGAACAGTGCAAGCTTCTAGTGACAAAGCATCTGATCTCGGTTCAAGAAGGG 840
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GTATTAAGGGAACAGTGCAAGCTTCTAGTGACAAAGCATCTGATCTCTGTTCAAGAAGGG 840
Query 841 ATCTCTCTTCTCATTAGGGTTGACGTAAGTGATAACAGAACGAGAGATTCCATGTTGAAG 900
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCTCTCTTCTCATCAGGGTTGACGTAAGTGATAACAGAACGAGAGATTCCATGTTGAAA 900
Query 901 GACTTGATTGATATCAGGAATAACATATTGGCAGCTAAAAAGAAATGGGAAGAAGCTGGT 960
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GACTTAATCGATATCAGGAATAACATATTGGCGGCTAAAAAGAAATGGGAAGAAGCTGGT 960
Query 961 TTTACAATGTCAA-GAATGACTGATATTCACGGTAATGAAGAAACAAACGAGGAAGAAGA 1019
|||||||| |||| || |||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 961 TTTACAATTTCAATGA-TGACTGGTACTCACGATAATGAAGAAACAAACGGGGAAGAAGA 1019
Query 1020 AGATATCTGGGAGGAGGATGATGGCAAGGTTAAAACTGATTCAGTCAAGAACGTGGCTCA 1079
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1020 AGATATCTGGGAGGAGGATGATGGTAAGGTTGGAACTGATTCAGTCAAGAACGTGGCTCC 1079
Query 1080 TGTGATGAGAACTCAGCAGAGTGAGAATTCATCTTTACCATCATCAGGTGAAGCAAAGAA 1139
||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 1080 TGTGACAAGAACTCAGCAGAGTGATAATTCATCTTTACTATCATCAAGTGAAGCAAAGAA 1139
Query 1140 GTCTACATCAGAAGCTAGGTCCAATAAAGTGTCGAACACTAAAAAAGTTGGAAGCAGTGG 1199
||| | || | |||| | || || | | | | |||||||||||||||||||||
Sbjct 1140 GTCCA-AT-A-AAGC--G-TC-AA-A------C-A-C--TAAAAAAGTTGGAAGCAGTGG 1181
Query 1200 AAACTCTCTTAGAGACAAGCTAATTTCTGAAGCGCCTGTGATGAATTGGGGATCACAGTT 1259
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1182 GGACTCTCTTAGGGACAAGCTAATTTCTGAAGCGCCTGTGATGAATTGGGGATCACTGTT 1241
Query 1260 GACTAATTGGGAATCAACTACGGAAGTTCGAGCTAATTACCGGGGTTTAGAGATCGAGAG 1319
|| ||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1242 GAGTAATTGGGACTCAAGTACGGAAGTTCGAGCTAATTACCGGGGGTTAGAGCTCGAGAG 1301
Query 1320 CCACTGGGGCAGGGTGGATCAAGATGCTATAATTCCAGCAGATAAAATAGCAGAATTGAA 1379
|||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 1302 CCACTGGGGCAGGGTGGATCAAGATGCTGTAATTCCGGCAGAGAAAATAGCAGAATTGAA 1361
Query 1380 TCTTCAGGCAACCGTGTATAGAGAAGAGAGAACAGAGACACCTCCATGCCGTGCTTCTCT 1439
||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1362 TCTTCAGGCGACTGTTTATAGAGAAGAGAGAACAGAGACACCTCCATGCCGTGCTCCTCT 1421
Query 1440 AAAGAAAGGTGGTCTTTGCCAGAGAAGAGATCTCAGAGTCTGTCCGTTTCACGGACCCAT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 AAAGAAAGGTGGTCTTTGCCAGAGAAGAGATCTCAGAGTCTGTCCGTTTCATGGACCCAT 1481
Query 1500 TGTACCCCGGGATGATGAAGGAAACACC-ATAATCCAGGAATCTCCATTAGATGAGAGTG 1558
|||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 1482 TGTACCTCGGGATGATGAAGGAAA-ACCCATAACCCAGGAATCTCCATTAGATGAGAGT- 1539
Query 1559 AA-AACCAAACTTCTTCAACTTCAGGGACCAACCAGGATGTGTCTATGGATGAAACAACT 1617
| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1540 ATTAACCAAACTTCTTCTACTACAGGGACCAACCAGGATGTGGCTATGGATGAAACAACT 1599
Query 1618 TCAGATTCTGATCCTAATCAGTTAGCTAGGCAAATAGCGAAAGAGGCTCTGAAGAATATC 1677
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1600 TCAGATTCTGATCCTAATCAGTTAGCTAGGCAAATAGCGAAACAGGCTCTGAAGAATATC 1659
Query 1678 CGGGAGAAAGACAAAGAAGTGGTGAGGAAAAGAGCAAAGCTTGTTAAGGTTAAGGTTAAG 1737
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1660 CGGGAGAAAGACAAAGAAGTGATGAGGAAAAGAGCAAAGCTTGTTAAGGTTAAGGTTAAG 1719
Query 1738 GAACACAATCATGAAGTTCTGCGTGGTGCGGCAATAGCCTCAACTTCTAGATCGAATGCT 1797
||||||||||| ||||||||||||| ||| || |||||||||||||||||||| |||| |
Sbjct 1720 GAACACAATCAAGAAGTTCTGCGTGATGCTGCTATAGCCTCAACTTCTAGATCAAATGTT 1779
Query 1798 ATGGATGATGAGTTTGATAGAGTTTTTGCTGAAAAGAAAAACAAGAAGCAAACCTTTTCC 1857
|| ||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1780 ATCGATGAAGAGTTTGATAGAGTTTTTGCTGCAAGGAAAAACAAGAAACAAACCTTTTCC 1839
Query 1858 ACAA-G-G-CGTAAGAAAACAACGGCTAAAGATAGAATATCCCAGAGACTGTTTAGTAAT 1914
| | | | || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1840 TCGATGCGGCGAAAGAAAACAACGGCTAAAGATAGAATATCCCAGAGACTGCTTAGTAAT 1899
Query 1915 CGAGTAAAAGGTACTAATCCACAGCAGTTGGCTCAGGGCAATGATGAAAAGTGCCGGGAT 1974
|| |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1900 CGTGTAAAAAGTACTAATCCGCAGCAGTTGGGTCAGGGCAATGATGAAAAGTGCCGGGAA 1959
Query 1975 ACATCGGCTAACCAGTGGTAA 1995
|||||||||||||||||||||
Sbjct 1960 ACATCGGCTAACCAGTGGTAA 1980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5