BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61810.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324620 jgi|Araly1|324620|fgenesh1_pm.C_scaffold_5002164 1825 0.0
> Ahg324620 jgi|Araly1|324620|fgenesh1_pm.C_scaffold_5002164
Length=1125
Score = 1825 bits (988), Expect = 0.0
Identities = 1085/1131 (96%), Gaps = 9/1131 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGAT-CCTGATGACGACGATGCAAA-ACGCTTTCTGGATTCTCTTGGTTTTTT 58
||||||||||| | | |||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 1 ATGAAGATGATACAT-ATGACGACGATG-AAATACGCTTTCTGGATTCTCCTGGTTTTTT 58
Query 59 CCATCTCAATGGCTTCTTGCTCCACGATTCCATCGCTTGTAGGTCCACAAATCGGAATCA 118
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 59 CCATCTCCATGGCTTCTTGCTCCATGATTCCATCGCTTGGAGGTCCACAAATCGGAATCA 118
Query 119 ACTACGGAGAATACAGCTCCAATCTTGAAGATAGTAGTCCAGTGATCGGAATCAACTATG 178
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 119 ACTACGGACTATACAGCTCCAATCTTGAAG--A-TAGTCCAGTGATCGGAATCAACTATG 175
Query 179 GTCGTTACGGCTCAAACCTACCACCACCAGAAGCAATACCATCGCTAGTCAACTCTCTCT 238
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 176 GTCGTTACGGCTCAAACCTTCCTCAACCAGAAGCAATACCATCGCTAGTCAACTCTCTCT 235
Query 239 CCATCAAACATGTCAAAACCTTTGACTTGGATCCAAGAATCACCAAATCTTTCGCCAACA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CCATCAAACATGTCAAAACCTTTGACTTGGATCCAAGAATCACCAAATCTTTCGCCAACA 295
Query 299 CTGGAATCACTCTCTCCCTCTGTATCCCCAACGACAAGATCCCATCTCTAGCCACCAATC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGGAATCACTCTCTCCCTCTGTATCCCCAACGACAAGATCCCATCTCTAGCCACCAATC 355
Query 359 TCTCCGAAGCTGAATCAATCATCAGAAACTTCATCTTACCTTACCACAAGAACACAATCA 418
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 356 TCTCCCAAGCTGAATCAATCATCAGAAATTTCATCTTACCTTACCACAAGAACACAATCA 415
Query 419 TCACAGCAATCTCCGTCGGAAACGAAGTCTCCTTACTCCCGCAATTCTCCAACCACCTAG 478
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 TCACAACGATCTCCGTCGGAAACGAAGTGTCCTTACTCCCGCAATTCTCCAACCACCTAG 475
Query 479 TCTCAGCTATGGTCAACGTTCACAAAGCAATCAAGAGATACAGATTACACAAGAAGATCA 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCTCAGCGATGGTCAACGTTCACAAAGCAATCAAGAGATACAGATTACACAAGAAGATCA 535
Query 539 AAGTCTCCACAACGCATTCTCTCGCGATTCTTTCCAGAAGATTCCCTCCTTCGACTGCTG 598
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 536 AAGTCTCCACAACACATTCCCTCGCGATTCTTTCCAGAAGATTCCCTCCTTCGACTGC-G 594
Query 599 -TTTTCCATCAATCGATCGGTGATTCGGTTTTGGAACCACTCATAAGGTTTCTACAAAGA 657
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 595 ATTTTCCATCAATCGATCGGTGATTCGGTTCTGAAACCACTCATAAGGTTTCTACAAAGA 654
Query 658 ACAAATTCACCTCTCATGGTGAACGTTTACCCTTACCTCGCTTATAAACAATCATTCCCT 717
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 655 ACAAATTCACCTCTGATGGTGAATGTTTACCCGTACCTCGCTTATAAACAATCATTCCCT 714
Query 718 TCGATTCCTCTGGATTTTGCTCTGTTTCAGCCGATGAACAGCCCCAGACGCCGGAGATAC 777
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 715 TCGATTCCTCTGGATTTTGCTCTGTTTCAGCCGATGAATAGCCCCAAACGCCGGAGATAC 774
Query 778 ATAGATCCGTACACTGGAGTTGCATACACCAATCTGTTCGACATAATGCTGGATTCTGTT 837
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 ATAGATCCGTACACTGGAGTTGCATACACCAATCTGTTCGACATAATGTTGGATTCTGTT 834
Query 838 GACTCCGCCGTGAAATCCTTAGGGTTACCTGAAATTCCGGTGGTTGTATCGGAGATTGGG 897
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 835 GACTCCGCCGTGAAATCCTTAGGGTTACCTAAAATTCCGGTGGTTGTATCGGAGATTGGG 894
Query 898 TGGCCGACGAGGGGAGATCCGGGTGAAACAGCTGCTAATTTGGAGAACGCTAGGGTTTTT 957
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGGCCGTCGAGCGGAGATCCAGGTGAAACAGCTGCTAATTTGGAGAACGCTAGGGTTTTT 954
Query 958 AACCAACGGCTCGTTGAGCATCTGAGAAGAAGATGGAATAAAGTTCCGGTGTATATCTTT 1017
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 955 AACCAACGGCTCGTTGAGCATCTGAGAAGAAGATGGAATAAGGTTCCTGTGTATATCTTT 1014
Query 1018 GCTCTGTTCGATGAAGACCAGAAAACTGGAAACGCCGTGGAGAAGCACTGGGGATTGCTT 1077
||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 1015 GCTCTGTTCGATGAAGATCAGAAAACTGGAGCCGCCGTGGAGAAACACTGGGGATTGCTT 1074
Query 1078 TACGGTAACGGATCGAGGAAGTATGATCTGAATTTCTCGCCGCCGATTTGA 1128
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CACGGTAACGGATCGAGGAAGTATGATCTGAATTTCTCGCCGCCGATTTGA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5