BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61827.1

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939254 jgi|Araly1|939254|scaffold_503445.1                        246    3e-65


> Ahg939254 jgi|Araly1|939254|scaffold_503445.1
Length=220

 Score =  246 bits (133),  Expect = 3e-65
 Identities = 168/183 (92%), Gaps = 9/183 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTACACCCACACTCGCACAAGGTCACAGCCATGACTCTTTATGGGACGAGCGTCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGCTACACCCACACTCGCACAAGGTCACAGCCATGACTCTTTATGGGACGAGCGTCTT  80

Query  61   GGGAAGCGTGTGAGTTTTATGTTACCACGTGCCGAGTCAGTTCTGAGTCGCTG-GTGTTC  119
            ||||||||||||||||  |||||| |||||||||||||||||||||||||| | ||||||
Sbjct  81   GGGAAGCGTGTGAGTT--ATGTTAGCACGTGCCGAGTCAGTTCTGAGTCGC-GCGTGTTC  137

Query  120  ATGCTGTATTCttttttttCTTTCACGCGCTTTTAATCTTAGCAAATCAAAAATCGAAAT  179
            ||| |||| |||||||   ||| |||||||||  ||||||||||||| ||||||||||| 
Sbjct  138  ATGTTGTACTCTTTTT---CTT-CACGCGCTTC-AATCTTAGCAAATAAAAAATCGAAAC  192

Query  180  TAT  182
            |||
Sbjct  193  TAT  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6224686543


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5